Projects per year
International and National Collaboration
Publications and projects within past five years.
Profiles
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Jarno Alanko
- Department of Computer Science - Postdoctoral Researcher
- Algorithmic Bioinformatics
- Genome-scale Algorithmics research group / Veli Mäkinen
Person: U2 Teaching and research staff, UH
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Elena Biagi
- Department of Computer Science - Doctoral Researcher
- Algorithmic Bioinformatics
- Doctoral Programme in Computer Science
Person: U1 Research and teaching staff, Doctoral Researcher
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Diego Alejandro Diaz Dominguez, Postdoctoral researcher
- Department of Computer Science - Postdoctoral Researcher
- Algorithmic Bioinformatics
Person: U2 Teaching and research staff
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Saska Ilmari Dönges
- Department of Computer Science - Doctoral Researcher
- Algorithmic Bioinformatics
- Doctoral Programme in Computer Science
Person: U1 Research and teaching staff, Doctoral Researcher
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SAFEBIO: Safe and Complete Algorithms for Bioinformatics
Khan, S. (Project manager), Schmidt, S. S. (Participant) & Ma, J. (Participant)
01/03/2020 → 28/02/2025
Project: Research project
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Sekvenssianalyysin uudet menetelmät ja laajennukset
Mäkinen, V. (Project manager)
01/09/2017 → 31/08/2021
Project: Research project
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Syöpägenetiikan tutkimuksen huippuyksikkö / Mäkinen
Mäkinen, V. (Project manager)
01/01/2015 → 31/12/2017
Project: Research project
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Syöpägenetiikan tutkimuksen huippuyksikkö
Mäkinen, V. (Project manager)
01/01/2012 → 31/12/2017
Project: Research project
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Batched k-mer lookup on the Spectral Burrows-Wheeler Transform
Alanko, J., Biagi, E., Puglisi, S. & Mackenzie, J., 7 Jan 2025, 2025 Proceedings of the Symposium on Algorithm Engineering and Experiments (ALENEX). Chowdhury, R., Berry, J., Hanauer, K. & Ren, B. (eds.). Society for Industrial and Applied Mathematics, p. 95 - 106 12 p.Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review
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Accelerating ILP Solvers for Minimum Flow Decompositions Through Search Space and Dimensionality Reductions
Grigorjew, A., Dias, F. H. C., Cracco, A., Rizzi, R. & Tomescu, A. I., 2024, 22nd International Symposium on Experimental Algorithms (SEA 2024). Liberti, L. (ed.). Dagstuhl, Germany: Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, p. 14:1-14:19 (Leibniz International Proceedings in Informatics (LIPIcs); vol. 301).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review
Open AccessFile -
Accurate Flow Decomposition via Robust Integer Linear Programming
Dias, F. H. C. & Tomescu, A. I., 13 Sept 2024, In: IEEE/ACM Transactions on Computational Biology and Bioinformatics. 21, 6, p. 1955 - 1964 10 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Applying the Safe-And-Complete Framework to Practical Genome Assembly
Schmidt, S., Toivonen, S., Medvedev, P. & Tomescu, A. I., Aug 2024, 24th International Workshop on Algorithms in Bioinformatics, WABI 2024. Pissis, S. P. & Sung, W.-K. (eds.). Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, 8. (Leibniz International Proceedings in Informatics, LIPIcs; vol. 312).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review
Open AccessFile -
CLOUDRNASPADES: Isoform assembly using bulk barcoded RNA sequencing data
Meleshko, D., Prjbelski, A. D., Raiko, M., Tomescu, A. I., Tilgner, H. & Hajirasouliha, I., 1 Feb 2024, In: Bioinformatics. 40, 2, btad781.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile
Activities
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Algorithms (Journal)
Mäkinen, V. (Reviewer)
Oct 2024Activity: Publication peer-review and editorial work types › Peer review of manuscripts
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RECOMB 2025 (Event)
Mäkinen, V. (Programme Committee Member)
Nov 2024 → Dec 2024Activity: Publication peer-review and editorial work types › Peer review of manuscripts
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CPM 2025 (Event)
Mäkinen, V. (Programme Committee Chair)
Jul 2024 → Jun 2025Activity: Publication peer-review and editorial work types › Peer review of manuscripts
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Univ Liverpool, University of Liverpool
Jiamjitrak, W. (Visiting researcher)
15 Jul 2024 → 19 Jul 2024Activity: Visiting an external institution types › Academic visit to other institution
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Melike Akkaya
Tomescu, A. (Host)
1 Aug 2024 → 8 Oct 2024Activity: Hosting a visitor types › Academic visit at UH
Prizes
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Alberto Apostolico Best Paper Award
Puglisi, S. (Recipient), Raman, R. (Recipient), Belazzougui, D. (Recipient) & Kosolobov, D. (Recipient), 6 Jul 2021
Prize: Prizes and awards
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Best student paper award at ICALP (track A)
Caceres Reyes, M. A. (Recipient), 12 Jul 2023
Prize: Prizes and awards
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Researcher of the Year Award for junior researchers
Caceres Reyes, M. A. (Recipient), 2021
Prize: Prizes and awards
Press/Media
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An algorithm shedding light on the evolution of tumours helps individualise cancer therapies
04/02/2019 → 05/02/2019
2 items of Media coverage
Press/Media: Press / Media
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-UNIVERSITY OF HELSINKI: An algorithm shedding light on the evolution of tumours helps individualise cancer therapies
05/02/2019
1 item of Media coverage
Press/Media: Press / Media