Projects per year
Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
Profiles
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Jarno Alanko
- Department of Computer Science - University Researcher
- Algorithmic Bioinformatics
- Genome-scale Algorithmics research group / Veli Mäkinen
Person: U3 Research and teaching staff, UH
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Elena Biagi
- Department of Computer Science - Visiting scholar
- Doctoral Programme in Computer Science
- Algorithmic Bioinformatics
Person: Visiting scholar, Doctoral Researcher
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Diego Alejandro Diaz Dominguez, Postdoctoral researcher
- Department of Computer Science - Postdoctoral Researcher
- Algorithmic Bioinformatics
Person: U2 Teaching and research staff
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Saska Ilmari Dönges
- Department of Computer Science - Visiting scholar
- Doctoral Programme in Computer Science
- Algorithmic Bioinformatics
Person: Visiting scholar, Doctoral Researcher
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Juha Arvo Mikael Harviainen
- Department of Computer Science - Postdoctoral Researcher
- Algorithmic Bioinformatics
Person: U2 Teaching and research staff
Projects
- 4 Finished
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SAFEBIO: Safe and Complete Algorithms for Bioinformatics
Khan, S. (Project manager), Schmidt, S. S. (Participant) & Ma, J. (Participant)
01/03/2020 → 28/02/2025
Project: Research project
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Sekvenssianalyysin uudet menetelmät ja laajennukset
Mäkinen, V. (Project manager)
01/09/2017 → 31/08/2021
Project: Research project
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Syöpägenetiikan tutkimuksen huippuyksikkö / Mäkinen
Mäkinen, V. (Project manager)
01/01/2015 → 31/12/2017
Project: Research project
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Syöpägenetiikan tutkimuksen huippuyksikkö
Mäkinen, V. (Project manager)
01/01/2012 → 31/12/2017
Project: Research project
Research output
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Practical Colinear Chaining on Sequences Revisited
Rizzo, N., Cáceres, M. & Mäkinen, V., 2026, Bioinformatics Research And Applications, Isbra 2025, Pt Ii. Tang, J., Lai, X., Cai, Z., Peng, W. & Wei, Y. (eds.). Springer Science and Business Media Deutschland GmbH, Vol. 15757. p. 203-216 14 p. (Lecture Notes in Computer Science; vol. 15757 LNBI).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review
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Sorting Circular Suffixes in Linear Time
Cotumaccio, N., 2026, Developments in Language Theory - 29th International Conference, DLT 2025, Proceedings. Ko, S.-K. & Manea, F. (eds.). Springer Science and Business Media Deutschland GmbH, Vol. 16036. p. 294-310 17 p. (Lecture Notes in Computer Science; vol. 16036).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review
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A heuristic algorithm for aircraft conflict resolution based on closed-form analytical solutions of relaxed pairwise problems
Dias, F. H. C., Hijazi, H. L. & Rey, D., Nov 2025, In: Operations Research Letters. 63, 6 p., 107368.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Algorithms and Graph Structures for Splitting Network Flows, in Theory and Practice
Grigorjew, A., 2025, Helsinki: University of Helsinki.Research output: Thesis › Doctoral Thesis › Collection of Articles
Open Access -
Algorithms for Computing Very Large BWTs: a Short Survey
Díaz-Domínguez, D., Egidi, L., Guerrini, V., Louza, F. A. & Rosone, G., 8 Aug 2025, The Expanding World of Compressed Data: A Festschrift for Giovanni Manzini's 60th Birthday. Ferragina, P., Gagie, T. & Navarro, G. (eds.). Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, 7. (OpenAccess Series in Informatics; vol. 131).Research output: Chapter in Book/Report/Conference proceeding › Chapter › Scientific › peer-review
Open AccessFile
Activities
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Genome Research (Journal)
Mäkinen, V. (Reviewer)
Apr 2025Activity: Publication peer-review and editorial work types › Peer review of manuscripts
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ISMB/ECCB 2025 (Event)
Mäkinen, V. (Programme Committee Member)
Feb 2025Activity: Publication peer-review and editorial work types › Peer review of manuscripts
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Andrea Cracco
Tomescu, A. (Host)
30 Jul 2025 → 30 Aug 2025Activity: Hosting a visitor types › Academic visit at UH
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Pierre Peterlongo
Tomescu, A. (Host)
17 Aug 2025 → 23 Aug 2025Activity: Hosting a visitor types › Academic visit at UH
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Algorithms (Journal)
Mäkinen, V. (Reviewer)
Oct 2024Activity: Publication peer-review and editorial work types › Peer review of manuscripts
Prizes
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Alberto Apostolico Best Paper Award
Puglisi, S. (Recipient), Raman, R. (Recipient), Belazzougui, D. (Recipient) & Kosolobov, D. (Recipient), 6 Jul 2021
Prize: Prizes and awards
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Best Paper Award
Schmidt, S. S. (Recipient) & Alanko, J. (Recipient), 9 Sept 2022
Prize: Prizes and awards
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Best student paper award at ICALP (track A)
Caceres Reyes, M. A. (Recipient), 12 Jul 2023
Prize: Prizes and awards
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Researcher of the Year Award for junior researchers
Caceres Reyes, M. A. (Recipient), 2021
Prize: Prizes and awards
Press/Media
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-UNIVERSITY OF HELSINKI: An algorithm shedding light on the evolution of tumours helps individualise cancer therapies
05/02/2019
1 item of Media coverage
Press/Media: Press / Media
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An algorithm shedding light on the evolution of tumours helps individualise cancer therapies
04/02/2019 → 05/02/2019
2 items of Media coverage
Press/Media: Press / Media