Projects per year
International and National Collaboration
Publications and projects within past five years.
Profiles
Tero Aittokallio
- Helsinki Institute for Information Technology
- Bioinformatics
- Institute for Molecular Medicine Finland - Senior Researcher
- Doctoral Programme in Biomedicine - Supervisor for doctoral programme
- Doctoral Programme in Clinical Research - Supervisor for doctoral programme
- Doctoral Programme in Drug Research - Supervisor for doctoral programme
- Doctoral Programme in Integrative Life Science - Supervisor for doctoral programme
Person: U3 Research and teaching staff, UH
Sampsa Hautaniemi
- Department of Biochemistry and Developmental Biology - Professor
- Sampsa Hautaniemi / Principal Investigator
- Bioinformatics
- Doctoral Programme in Biomedicine - Supervisor for doctoral programme
- Doctoral Programme in Clinical Research - Supervisor for doctoral programme
Person: UH, U4 Research and teaching staff
Liisa Holm
- Bioinformatics
- Computational genomics
- Institute of Biotechnology
- Organismal and Evolutionary Biology Research Programme - Professor
Person: UH, U4 Research and teaching staff
Juha Kärkkäinen
- Department of Computer Science - University Lecturer
- Helsinki Institute for Information Technology
- Practical Algorithms and Data Structures on Strings research group / Juha Kärkkäinen
- Bioinformatics
- Doctoral Programme in Computer Science - Supervisor for doctoral programme
Person: U3 Research and teaching staff, UH
Ari Löytynoja
- Bioinformatics
- Institute of Biotechnology - University Researcher
Person: U3 Research and teaching staff, UH
Equipment
Biodata Analytics Unit
Ville Mustonen (Manager), Mirkka Jones (Other), Pasi Rastas (Other) & Jukka Siren (Other)
Institute of BiotechnologyFacility/equipment: Research Laboratory
Projects
HiLIFE Grand Challenge "Combatting microbial drug resistance"
01/10/2018 → 30/09/2021
Project: Research project
HiLIFE Grand Challenge consortium "Combatting antimicrobial resistance"
01/10/2018 → 30/09/2021
Project: Other project
HiLIFE Grand Challenge: Combatting Antimicrobial Drug Resistance
01/10/2018 → 31/12/2021
Project: Research project
Suomalais-Ugrilainen muinaisgenomi
Onkamo, P., Oikkonen, J., Översti, S., Salmela, E., Salo, K. H., Nordqvist, K. & Junno, A.
Koneen Säätiö, Jane and Aatos Erkko Foundation
01/01/2016 → …
Project: Research project
Publications
ALDH1A1-related stemness in high-grade serous ovarian cancer is a negative prognostic indicator but potentially targetable by EGFR/mTOR-PI3K/aurora kinase inhibitors
Kaipio, K., Chen, P., Roering, P., Huhtinen, K., Mikkonen, P., Östling, P., Lehtinen, L., Mansuri, N., Korpela, T., Potdar, S., Hynninen, J., Auranen, A., Grénman, S., Wennerberg, K., Hautaniemi, S. & Carpén, O., Feb 2020, In : Journal of Pathology. 250, 2, p. 159-169 11 p.Research output: Contribution to journal › Article › Scientific › peer-review
A normalized drug response metric improves accuracy and consistency of anticancer drug sensitivity quantification in cell-based screening
Gupta, A., Gautam, P., Wennerberg, K. & Aittokallio, T., 23 Jan 2020, In : Communications Biology. 3, 1, 12 p., 42.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access
File
Cost-effective survival prediction for patients with advanced prostate cancer using clinical trial and real-world hospital registry datasets
Murtojärvi, M., Halkola, A. S., Airola, A., Laajala, T. D., Mirtti, T., Aittokallio, T. & Pahikkala, T., Jan 2020, In : International Journal of Medical Informatics. 133, 8 p., 104014.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access
File
Fast and accurate correction of optical mapping data via spaced seeds
Salmela, L., Mukherjee, K., Puglisi, S. J., Muggli, M. D. & Boucher, C., 1 Feb 2020, In : Bioinformatics. 36, 3, p. 682-689 8 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access
File
Fast Indexes for Gapped Pattern Matching
Cáceres, M., Puglisi, S. & Zhukova, B., 17 Jan 2020, p. 493-504. 12 p.Research output: Conference materials › Paper
Activities
Algorithms (Journal)
Veli Mäkinen (Reviewer)Apr 2020
Activity: Publication peer-review and editorial work types › Peer review of manuscripts
Massimo Cairo
Alexandru Tomescu (Host)3 Feb 2020 → 25 Feb 2020
Activity: Hosting a visitor types › Academic visit at UH
ISMB 2020 (Event)
Veli Mäkinen (Reviewer)Feb 2020
Activity: Publication peer-review and editorial work types › Peer review of manuscripts
Brendan Mumey
Veli Mäkinen (Host)Jan 2020 → Jun 2020
Activity: Hosting a visitor types › Academic visit at UH
Romeo Rizzi
Alexandru Tomescu (Host)2 Feb 2020 → 13 Feb 2020
Activity: Hosting a visitor types › Academic visit at UH
Press / Media
Interview on national TV, "Linnan jatkot" 6.12.2018
06/12/2018
1 item of Media coverage
Press/Media: Press / Media
Saamelaisissa on siperialaista perimää... story in Lapin kansa 2.12.2018
02/12/2018
1 item of Media coverage
Press/Media: Press / Media
Helsingin sanomien kuukausiliite - an extension to story published in March 2018
Päivi Onkamo, Elina Tuulikki Salmela, Ulla Moilanen, Kerttu Kukka Majander & Kati Hannele Salo
01/12/2018
1 item of Media coverage
Press/Media: Press / Media
Radio interview in Yle Tiedeykkönen: aDNA and Finnish origins
Päivi Onkamo & Kerttu Kukka Majander
27/11/2018
1 Media contribution
Press/Media: Press / Media