Projects per year
International and National Collaboration
Publications and projects within past five years.
Profiles

Tero Aittokallio
- Helsinki Institute for Information Technology
- Bioinformatics
- Institute for Molecular Medicine Finland - Senior Researcher
- Doctoral Programme in Clinical Research - Supervisor for doctoral programme
- Doctoral Programme in Drug Research - Supervisor for doctoral programme
- Doctoral Programme in Integrative Life Science - Supervisor for doctoral programme
Person: UH, Teaching and research personnel

Sampsa Hautaniemi
- Department of Biochemistry and Developmental Biology - Professor
- Sampsa Hautaniemi / Principal Investigator
- Bioinformatics
- Doctoral Programme in Biomedicine - Supervisor for doctoral programme
- Doctoral Programme in Clinical Research - Supervisor for doctoral programme
Person: UH, Teaching and research personnel

Liisa Holm
- Bioinformatics
- Computational genomics
- Institute of Biotechnology
- Organismal and Evolutionary Biology Research Programme - Professor
Person: UH, Teaching and research personnel

Juha Kärkkäinen
- Department of Computer Science - University Lecturer
- Helsinki Institute for Information Technology
- Practical Algorithms and Data Structures on Strings research group / Juha Kärkkäinen
- Bioinformatics
- Doctoral Programme in Computer Science - Supervisor for doctoral programme
Person: UH, Teaching and research personnel

Ari Löytynoja
- Bioinformatics
- Institute of Biotechnology - University Researcher
Person: UH, Teaching and research personnel
Projects 2002 2021
HiLIFE Grand Challenge consortium "Combatting antimicrobial resistance"
Hiltunen, T. J. & Holm, L. U. T.
01/10/2018 → 30/09/2021
Project: Other project › _Research
HiLIFE Grand Challenge "Combatting microbial drug resistance"
Hiltunen, T. J. & Holm, L. U. T.
01/10/2018 → 30/09/2021
Project: Research project › _Research
Suomalais-Ugrilainen muinaisgenomi
Onkamo, P. A., Oikkonen-Köngäs, J. M., Översti, S. A., Salmela, E. T., Salo, K. H., Nordqvist, K. & Junno, A.
Koneen Säätiö, Jane and Aatos Erkko Foundation
01/01/2016 → …
Project: Research project
Bugsy: Leikkausalueen patogeenien tunnistus metagenomiikan menetelmiä hyödyntäen (Bugsy)
Kankainen, M. J., Holm, L. U. T., Kankuri, E. M., Varmanen, P. K., Savijoki, K. K., Ojala-Kankainen, T. A., Medlar, A. J. & Vuola, J. A.
01/09/2015 → 31/08/2019
Project: Research project
Publications 2000 2019
Anagrelide for gastrointestinal stromal tumor
Pulkka, O-P. A., Gebreyohannes, Y. K., Wozniak, A., Mpindi, J. P., Tynninen, O. K., Icay-Rouhiainen, K. A., Cervera Taboada, A., Keskitalo, S. E., Murumägi, A., Kulesskiy, E., Laaksonen, M., Wennerberg, J. K., Varjosalo, M. T., Laakkonen, P. M., Lehtonen, R. J., Hautaniemi, S. K., Kallioniemi, O-P., Schöffski, P., Sihto, H. & Joensuu, H. T., 2019, In : Clinical Cancer Research.Research output: Contribution to journal › Article › Scientific › peer-review
Applying the Positional Burrows–Wheeler Transform to All-Pairs Hamming distance
Mäkinen, V. & Norri, T., Feb 2019, In : Information Processing Letters. 146, June, p. 17-19Research output: Contribution to journal › Article › Scientific › peer-review
Mechanistic insights into the evolution of DUF26-containing proteins in land plants
Vaattovaara, A. F. M., Brandt, B., Rajaraman, S., Safronov, O., Veidenberg, A., Luklová, M., Kangasjärvi, J. S., Löytynoja, A. P., Hothorn, M., Salojärvi, J. T. & Wrzaczek, M. A., 8 Feb 2019, In : Communications Biology. 2, 56.Research output: Contribution to journal › Article › Scientific › peer-review
Shared Molecular Targets Confer Resistance over Short and Long Evolutionary Timescales
Li, J., Vázquez-García, I., Persson, K., González, A., Yue, J-X., Barré, B., Hall, M. N., Long, A., Warringer, J., Mustonen, V. & Liti, G., 1 Jan 2019, In : Molecular Biology and Evolution.Research output: Contribution to journal › Article › Scientific › peer-review
Π-cyc: A Reference-free SNP Discovery Application using Parallel Graph Search
Younsi, R., Tang, J. & Holm, L. U. T., 29 Jan 2019, (Unpublished) In : arXiv.org .Research output: Contribution to journal › Article › General public
Activities 1998 2019
Computational analyses of small molecules activity from phenotypic screens
Tero Aittokallio (Supervisor)Activity: Examination types › Pre-examiner of doctoral thesis
Annual Symposium on Combinatorial Pattern Matching
Veli Mäkinen (Scientific Committee Member)Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars
Selection Committee for HiLIFE Research Trainee Scholarship (External organisation)
Veli Mäkinen (Member)Activity: Membership types › Membership or other role in review committee
Bioinformatics (Journal)
Veli Mäkinen (Reviewer)Activity: Publication peer-review and editorial work types › Peer review of manuscripts
PhD examining committee member
Ari Löytynoja (Supervisor)Activity: Examination types › Member of doctoral thesis committee / follow-up group
Press / Media
Interview on national TV, "Linnan jatkot" 6.12.2018
06/12/2018
1 item of media coverage
Press/Media: Press / Media
Saamelaisissa on siperialaista perimää... story in Lapin kansa 2.12.2018
02/12/2018
1 item of media coverage
Press/Media: Press / Media
Helsingin sanomien kuukausiliite - an extension to story published in March 2018
Päivi Anneli Onkamo, Elina Tuulikki Salmela, Ulla Moilanen, Kerttu Kukka Majander & Kati Hannele Salo
01/12/2018
1 item of media coverage
Press/Media: Press / Media
Radio interview in Yle Tiedeykkönen: aDNA and Finnish origins
Päivi Anneli Onkamo & Kerttu Kukka Majander
27/11/2018
1 media contribution
Press/Media: Press / Media