Projects per year
International and National Collaboration
Profiles
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Tero Aittokallio
- Institute for Molecular Medicine Finland - Senior Researcher
- Helsinki Institute for Information Technology
- Bioinformatics
- Doctoral Programme in Biomedicine - Supervisor for doctoral programme
- Doctoral Programme in Clinical Research - Supervisor for doctoral programme
- Doctoral Programme in Drug Research - Supervisor for doctoral programme
- Doctoral Programme in Integrative Life Science - Supervisor for doctoral programme
Person: U3 Research and teaching staff, UH
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Sampsa Hautaniemi
- Faculty Common Matters (Faculty of Medicine) - Title of Docent
- Department of Biochemistry and Developmental Biology - Professor
- Sampsa Hautaniemi / Principal Investigator
- Bioinformatics
- Doctoral Programme in Biomedicine - Supervisor for doctoral programme
- Doctoral Programme in Clinical Research - Supervisor for doctoral programme
- Doctoral Programme in Integrative Life Science - Supervisor for doctoral programme
Person: UH , U4 Research and teaching staff
-
Liisa Holm
- Organismal and Evolutionary Biology Research Programme - Professor
- Institute of Biotechnology
- Bioinformatics
- Computational genomics
- Doctoral Programme in Integrative Life Science - Supervisor for doctoral programme
Person: UH , U4 Research and teaching staff
-
Juha Kärkkäinen
- Department of Computer Science - University Lecturer
- Helsinki Institute for Information Technology
- Algorithmic Bioinformatics
- Practical Algorithms and Data Structures on Strings research group / Juha Kärkkäinen
- Bioinformatics
- Doctoral Programme in Computer Science - Supervisor for doctoral programme
Person: U3 Research and teaching staff, UH
-
Ari Löytynoja
- Institute of Biotechnology - University Researcher
- Bioinformatics
- Doctoral Programme in Integrative Life Science - Supervisor for doctoral programme
Person: UH , U4 Research and teaching staff
Equipment
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Biodata Analytics Unit
Ville Mustonen (Manager), Mirkka Jones (Other), Pasi Rastas (Other), Jukka Siren (Other) & Fatemehsadat Seyednasrollah (Other)
Institute of BiotechnologyFacility/equipment: Research Laboratory
-
DECIDER: DECIDER (Clinical Decision via Integrating Multiple Data Levels to Overcome Chemotherapy Resistance in High-Grade Serous Ovarian Cancer)
Korpisaari (ex. Tiilikka), P., Hautaniemi, S. & Mansnérus, J.
01/02/2021 → 31/01/2026
Project: Research project
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Suomalais-Ugrilainen muinaisgenomi
Onkamo, P., Oikkonen, J., Översti, S., Salmela, E., Salo, K. H., Nordqvist, K. & Junno, A.
Koneen Säätiö, Jane and Aatos Erkko Foundation
01/01/2016 → …
Project: Research project
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Elucidation of mechanisms of action of the natural stilbenoid pinosylvin via network pharmacology computational methods
Kibble, M. M., Aittokallio, T., Mäkelä, S., Saarinen, N. & Martinez Chacon , G.
01/01/2014 → …
Project: Research project
-
Gene-culture evolution in music
Ukkola-Vuoti, L., Oikkonen, J., Onkamo, P., Raijas, P. & Karma, K.
01/04/2002 → …
Project: Research project
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HiLIFE Grand Challenge "Combatting microbial drug resistance"
01/10/2018 → 30/09/2021
Project: Research project
-
Simplicity in Eulerian circuits: Uniqueness and safety
Obscura Acosta, N. & Tomescu, A. I., Jan 2024, In: Information Processing Letters. 183, p. 106421Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Algorithms and Complexity on Indexing Founder Graphs
Equi, M., Norri, T., Alanko, J., Cazaux, B., Tomescu, A. & Makinen, V., Jun 2023, In: Algorithmica. 85, 6, p. 1586-1623 38 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Breeze 2.0: an interactive web-tool for visual analysis and comparison of drug response data
Potdar, S., Ianevski, F., Ianevski, A., Tanoli, Z., Wennerberg, K., Seashore-Ludlow, B., Kallioniemi, O., Östling, P., Aittokallio, T. & Saarela, J., 5 Jul 2023, In: Nucleic Acids Research. 51, W1, p. W57-W61 5 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Chaining for accurate alignment of erroneous long reads to acyclic variation graphs
Ma, J., Caceres Reyes, M. A., Salmela, L., Mäkinen, V. & Tomescu, A., Aug 2023, In: Bioinformatics. 39, 8, 10 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Chaining of Maximal Exact Matches in Graphs
Rizzo, N., Caceres Reyes, M. A. & Mäkinen, V., 2023, String Processing and Information Retrieval. SPIRE 2023. Cham: Springer, p. 353–366 (Lecture Notes in Computer Science; vol. 14240).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review
Open AccessFile
Activities
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Väitöskomitean jäsen
Veli Mäkinen (Opponent)
Jul 2023Activity: Examination types › Opponent of doctoral dissertation
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Sequences workshop
Veli Mäkinen (Invited speaker)
May 2023Activity: Talk or presentation types › Invited talk
-
Andrea Cracco
Alexandru Tomescu (Host)
30 Aug 2023 → 14 Sep 2023Activity: Hosting a visitor types › Academic visit at UH
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ISMB/ECCB 2023 (Event)
Veli Mäkinen (Programme Committee Member)
Feb 2023Activity: Publication peer-review and editorial work types › Peer review of manuscripts
-
Workshop on Algorithms in Bioinformatics (WABI 2023) (Event)
Veli Mäkinen (Programme Committee Member)
May 2023Activity: Publication peer-review and editorial work types › Peer review of manuscripts
Prizes
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Alberto Apostolico Best Paper Award
Puglisi, Simon (Recipient), Raman, Rajeev (Recipient), Belazzougui, Djamal (Recipient) & Kosolobov, Dmitry (Recipient), 6 Jul 2021
Prize: Prizes and awards
Press/Media
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University of Helsinki: Researchers Identified Factors That Turn Normal Cells Into Liver Cancer Cells
Sampsa Hautaniemi & Biswajyoti Sahu
08/09/2021
1 item of Media coverage
Press/Media: Press / Media
-
388123-2021: Finland-Helsingin yliopisto: Services provided by medical laboratories
30/07/2021
1 item of Media coverage
Press/Media: Press / Media
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Tender Notice: HELSINGIN YLIOPISTO Seeks "Next Generation Sequencing Services for Decider" (118211-2021)
09/03/2021
1 item of Media coverage
Press/Media: Press / Media
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118211-2021: Finland-Helsinki: Services provided by medical laboratories
09/03/2021
1 item of Media coverage
Press/Media: Press / Media
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Next Generation Sequencing Services for Decider
09/03/2021
1 item of Media coverage
Press/Media: Press / Media