Projects per year
International and National Collaboration
Publications and projects within past five years.
Profiles
Tero Aittokallio
- Doctoral Programme in Clinical Research - Supervisor for doctoral programme
- Doctoral Programme in Drug Research - Supervisor for doctoral programme
- Doctoral Programme in Integrative Life Science - Supervisor for doctoral programme
- Department of Computer Science, Bioinformatics
- Institute for Molecular Medicine Finland - Senior Researcher
Person: UH, Teaching and research personnel
Sampsa Hautaniemi
- Doctoral Programme in Clinical Research - Supervisor for doctoral programme
- Department of Biochemistry and Developmental Biology - Professor
- Genome-Scale Biology (GSB) Research Program
- Sampsa Hautaniemi / Principal Investigator
- University Management - Docent
- Department of Computer Science, Bioinformatics
Person: UH, Teaching and research personnel
Liisa Holm
- Organismal and Evolutionary Biology Research Programme - Professor
- Department of Computer Science, Bioinformatics
- Computational genomics
- Institute of Biotechnology
Person: UH, Teaching and research personnel
Juha Kärkkäinen
- Doctoral Programme in Computer Science - Supervisor for doctoral programme
- Department of Computer Science - University Lecturer
- Department of Computer Science, Practical Algorithms and Data Structures on Strings research group / Juha Kärkkäinen
- Department of Computer Science, Helsinki Institute for Information Technology
- Department of Computer Science, Bioinformatics
Person: UH, Teaching and research personnel
Ari Löytynoja
- Department of Computer Science, Bioinformatics
- Institute of Biotechnology - University Researcher
Person: UH, Teaching and research personnel
Projects 2002 2019
Suomalais-Ugrilainen muinaisgenomi
Onkamo, P. A., Oikkonen-Köngäs, J. M., Översti, S. A., Salmela, E. T., Salo, K. H., Nordqvist, K. & Junno, A.
Koneen Säätiö, Jane and Aatos Erkko Foundation
01/01/2016 → …
Project: Research project
Bugsy: Leikkausalueen patogeenien tunnistus metagenomiikan menetelmiä hyödyntäen (Bugsy)
Kankainen, M. J., Holm, L. U. T., Kankuri, E. M., Varmanen, P. K., Savijoki, K. K., Ojala-Kankainen, T. A., Medlar, A. J. & Vuola, J. A.
01/09/2015 → 31/08/2019
Project: Research project
Elucidation of mechanisms of action of the natural stilbenoid pinosylvin via network pharmacology computational methods
Kibble, M. M., Aittokallio, T. A., Mäkelä, S., Saarinen, N. & Martinez Chacon , G.
01/01/2014 → …
Project: Research project
Gene-culture evolution in music
Ukkola-Vuoti, L., Oikkonen-Köngäs, J. M., Onkamo, P. A., Raijas, P. & Karma, K.
01/04/2002 → …
Project: Research project
Predicting disease specific effects and mechanisms of action of compound combinations in phytotherapy
Kibble, M. M., Aittokallio, T. A., Tang, J., Sultan Khan, S. & Peddinti, G.
18/05/2015 → 18/12/2017
Project: Research project
Publications 2000 2018
AAI-profiler: fast proteome-wide exploratory analysis reveals taxonomic identity, misclassification and contamination
Medlar, A. J., Törönen, P. & Holm, L., 2 Jul 2018, In : Nucleic Acids Research. 46, W1, p. W479-W485 7 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access
File
A Functional Homologous Recombination Assay Predicts Primary Chemotherapy Response and Long-Term Survival in Ovarian Cancer Patients
Tumiati, M., Hietanen, S., Hynninen, J., Pietilä, E., Färkkilä, A., Kaipio, K., Roering, P., Huhtinen, K., Alkodsi, A., Li, Y., Lehtonen, R., Erkan, E. P., Tuominen, M. M., Lehti, K., Hautaniemi, S. K., Vähärautio, A., Grenman, S., Carpen, O. & Kauppi, L., 15 Sep 2018, In : Clinical Cancer Research. 24, 18, p. 4482-4493 12 p.Research output: Contribution to journal › Article › Scientific › peer-review
Aggressive natural killer-cell leukemia mutational landscape and drug profiling highlight JAK-STAT signaling as therapeutic target
Dufva, O., Kankainen, M., Kelkka, T., Sekiguchi, N., Awad, S. A., Eldfors, S., Yadav, B., Kuusanmäki, H., Malani, D., Andersson, E. I., Pietarinen, P., Saikko, L., Kovanen, P. E., Ojala, T., Lee, D. A., Loughran, T. P., Nakazawa, H., Suzumiya, J., Suzuki, R., Ko, Y. H. & 7 others, 19 Apr 2018, In : Nature Communications. 9, 12 p., 1567.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access
File
Antiandrogens Reduce Intratumoral Androgen Concentrations and Induce Androgen Receptor Expression in Castration-Resistant Prostate Cancer xenografts
Knuuttila, M., Mehmood, A., Huhtaniemi, R., Yatkin, E., Häkkinen, M. R., Oksala, R., Laajala, T. D., Ryberg, H., Handelsman, D. J., Aittokallio, T., Auriola, S., Ohlsson, C., Laiho, A., Elo, L. L., Sipila, P., Makela, S. I. & Poutanen, M., Jan 2018, In : The American Journal of Pathology. 188, 1, p. 216-228 13 p.Research output: Contribution to journal › Article › Scientific › peer-review
A safe and complete algorithm for metagenomic assembly
Acosta, N. O., Mäkinen, V. & Tomescu, A. I., 7 Feb 2018, In : Algorithms for Molecular Biology. 13, 12 p., 3.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access
File
Activities 1998 2019
RECOMB 2019
Veli Mäkinen (Scientific Committee Member)Dec 2019
Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars
CPM 2018
Veli Mäkinen (Scientific Committee Member)Feb 2018
Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars
SPIRE 2018
Veli Mäkinen (Scientific Committee Member)Jun 2018
Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars
Annual International Conference on Research in Computational Molecular Biology
Leena Salmela (Poster review committee)2018 → …
Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars
Bioinformatics (Journal)
Veli Mäkinen (Reviewer)Apr 2018
Activity: Publication peer-review and editorial work types › Peer review of manuscripts