Projects per year
International and National Collaboration
Publications and projects within past five years.
Profiles
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Tero Aittokallio
- Institute for Molecular Medicine Finland - Senior Researcher
- Helsinki Institute for Information Technology
- Bioinformatics
- Doctoral Programme in Biomedicine - Supervisor for doctoral programme
- Doctoral Programme in Clinical Research - Supervisor for doctoral programme
- Doctoral Programme in Drug Research - Supervisor for doctoral programme
- Doctoral Programme in Integrative Life Science - Supervisor for doctoral programme
Person: U3 Research and teaching staff, UH
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Sampsa Hautaniemi
- Department of Biochemistry and Developmental Biology - Professor
- Sampsa Hautaniemi / Principal Investigator
- Bioinformatics
- Doctoral Programme in Biomedicine - Supervisor for doctoral programme
- Doctoral Programme in Clinical Research - Supervisor for doctoral programme
- Doctoral Programme in Integrative Life Science - Supervisor for doctoral programme
Person: UH, U4 Research and teaching staff
-
Liisa Holm
- Organismal and Evolutionary Biology Research Programme - Professor
- Institute of Biotechnology
- Bioinformatics
- Computational genomics
Person: UH, U4 Research and teaching staff
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Juha Kärkkäinen
- Department of Computer Science - University Lecturer
- Helsinki Institute for Information Technology
- Algorithmic Bioinformatics
- Practical Algorithms and Data Structures on Strings research group / Juha Kärkkäinen
- Bioinformatics
- Doctoral Programme in Computer Science - Supervisor for doctoral programme
Person: U3 Research and teaching staff, UH
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Ari Löytynoja
- Institute of Biotechnology - Research Director
- Bioinformatics
Person: UH, U4 Research and teaching staff
Equipment
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Biodata Analytics Unit
Ville Mustonen (Manager), Mirkka Jones (Other), Pasi Rastas (Other), Jukka Siren (Other) & Fatemehsadat Seyednasrollah (Other)
Institute of BiotechnologyFacility/equipment: Research Laboratory
Projects
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DECIDER: DECIDER (Clinical Decision via Integrating Multiple Data Levels to Overcome Chemotherapy Resistance in High-Grade Serous Ovarian Cancer)
Korpisaari (ex. Tiilikka), P., Hautaniemi, S. & Mansnérus, J.
01/02/2021 → 31/01/2026
Project: Research project
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HiLIFE Grand Challenge consortium "Combatting antimicrobial resistance"
01/10/2018 → 30/09/2021
Project: Other project
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HiLIFE Grand Challenge "Combatting microbial drug resistance"
01/10/2018 → 30/09/2021
Project: Research project
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HiLIFE Grand Challenge: Combatting Antimicrobial Drug Resistance
01/10/2018 → 31/12/2021
Project: Research project
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Publications
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Algorithms meet sequencing technologies – 10th edition of the RECOMB-Seq workshop
Patro, R. & Salmela, L., Jan 2021, In : iScience. 24, 1, 7 p., 101956.Research output: Contribution to journal › Editorial › Scientific › peer-review
Open AccessFile -
Artificial intelligence, machine learning, and drug repurposing in cancer
Tanoli, Z., Vähä-Koskela, M. & Aittokallio, T., 11 Feb 2021, In : Expert opinion on drug discovery. 13 p.Research output: Contribution to journal › Review Article › peer-review
Open AccessFile -
Block trees
Belazzougui, D., Caceres, M., Gagie, T., Gawrychowski, P., Kaerkkaeinen, J., Navarro, G., Ordonez, A., Puglisi, S. J. & Tabei, Y., May 2021, In : Journal of Computer and System Sciences. 117, p. 1-22 22 p.Research output: Contribution to journal › Article › Scientific › peer-review
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Data structures based on k-mers for querying large collections of sequencing data sets
Marchet, C., Boucher, C., Puglisi, S. J., Medvedev, P., Salson, M. & Chikhi, R., Jan 2021, In : Genome Research. 31, 1, 12 p.Research output: Contribution to journal › Review Article › peer-review
Open AccessFile -
Evolutionary Sequence Analysis and Visualization with Wasabi
Löytynoja, A. & Veidenberg, A., 2021, Multiple Sequence Alignment. Katoh, K. (ed.). New York: Humana press, p. 225-240 (Methods in Molecular Biology ; vol. 2231).Research output: Chapter in Book/Report/Conference proceeding › Chapter › Scientific › peer-review
Activities
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Bioinformatics (Journal)
Veli Mäkinen (Reviewer)
Mar 2021Activity: Publication peer-review and editorial work types › Peer review of manuscripts
-
Algorithmica (Journal)
Veli Mäkinen (Reviewer)
Mar 2021Activity: Publication peer-review and editorial work types › Peer review of manuscripts
-
Bioinformatics (Journal)
Veli Mäkinen (Reviewer)
Jan 2021Activity: Publication peer-review and editorial work types › Peer review of manuscripts
-
Elia Carlo Zirondelli
Alexandru Tomescu (Host)
2 Feb 2020 → 30 Apr 2020Activity: Hosting a visitor types › Academic visit at UH
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RECOMB 2021 (Event)
Veli Mäkinen (Programme Committee Member)
Nov 2020 → Dec 2021Activity: Publication peer-review and editorial work types › Peer review of manuscripts
Press / Media
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Interview on national TV, "Linnan jatkot" 6.12.2018
06/12/2018
1 item of Media coverage
Press/Media: Press / Media
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Saamelaisissa on siperialaista perimää... story in Lapin kansa 2.12.2018
02/12/2018
1 item of Media coverage
Press/Media: Press / Media
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Helsingin sanomien kuukausiliite - an extension to story published in March 2018
Päivi Onkamo, Elina Tuulikki Salmela, Ulla Moilanen, Kerttu Kukka Majander & Kati Hannele Salo
01/12/2018
1 item of Media coverage
Press/Media: Press / Media
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Radio interview in Yle Tiedeykkönen: aDNA and Finnish origins
Päivi Onkamo & Kerttu Kukka Majander
27/11/2018
1 Media contribution
Press/Media: Press / Media