Bioinformatics

Tero Aittokallio
- tero.aittokalliohelsinkifi
- Institute for Molecular Medicine Finland - Senior Researcher
- Helsinki Institute for Information Technology
- Bioinformatics
- Doctoral Programme in Biomedicine - Supervisor for doctoral programme
- Doctoral Programme in Clinical Research - Supervisor for doctoral programme
- Doctoral Programme in Drug Research - Supervisor for doctoral programme
- Doctoral Programme in Integrative Life Science - Supervisor for doctoral programme
Person: U3 Research and teaching staff, UH
20012023
Sampsa Hautaniemi
- sampsa.hautaniemihelsinkifi
- Faculty Common Matters (Faculty of Medicine) - Title of Docent
- Department of Biochemistry and Developmental Biology - Professor
- Sampsa Hautaniemi / Principal Investigator
- Bioinformatics
- Doctoral Programme in Biomedicine - Supervisor for doctoral programme
- Doctoral Programme in Clinical Research - Supervisor for doctoral programme
- Doctoral Programme in Integrative Life Science - Supervisor for doctoral programme
Person: UH , U4 Research and teaching staff
20032023
Liisa Holm
- liisa.holmhelsinkifi
- Organismal and Evolutionary Biology Research Programme - Professor
- Institute of Biotechnology
- Bioinformatics
- Computational genomics
- Doctoral Programme in Integrative Life Science - Supervisor for doctoral programme
Person: UH , U4 Research and teaching staff
20032023
Juha Kärkkäinen
- juha.karkkainenhelsinkifi
- Department of Computer Science - University Lecturer
- Helsinki Institute for Information Technology
- Algorithmic Bioinformatics
- Practical Algorithms and Data Structures on Strings research group / Juha Kärkkäinen
- Bioinformatics
- Doctoral Programme in Computer Science - Supervisor for doctoral programme
Person: U3 Research and teaching staff, UH
19982023
Ari Löytynoja
- ari.loytynojahelsinkifi
- Institute of Biotechnology - University Researcher
- Bioinformatics
- Doctoral Programme in Integrative Life Science - Supervisor for doctoral programme
Person: UH , U4 Research and teaching staff
20012023

Biodata Analytics Unit
Ville Mustonen (Manager), Mirkka Jones (Other), Pasi Rastas (Other), Jukka Siren (Other) & Fatemehsadat Seyednasrollah (Other)
Institute of Biotechnology
Facility/equipment: Research Laboratory

4 Active
27 Finished

DECIDER: DECIDER (Clinical Decision via Integrating Multiple Data Levels to Overcome Chemotherapy Resistance in High-Grade Serous Ovarian Cancer)
Korpisaari (ex. Tiilikka), P., Hautaniemi, S. & Mansnérus, J.
01/02/2021 → 31/01/2026
Project: Research project
Suomalais-Ugrilainen muinaisgenomi
Onkamo, P., Oikkonen, J., Översti, S., Salmela, E., Salo, K. H., Nordqvist, K. & Junno, A.
Koneen Säätiö, Jane and Aatos Erkko Foundation
01/01/2016 → …
Project: Research project
Elucidation of mechanisms of action of the natural stilbenoid pinosylvin via network pharmacology computational methods
Kibble, M. M., Aittokallio, T., Mäkelä, S., Saarinen, N. & Martinez Chacon , G.
01/01/2014 → …
Project: Research project
Gene-culture evolution in music
Ukkola-Vuoti, L., Oikkonen, J., Onkamo, P., Raijas, P. & Karma, K.
01/04/2002 → …
Project: Research project
HiLIFE Grand Challenge "Combatting microbial drug resistance"
Hiltunen, T. & Holm, L.
01/10/2018 → 30/09/2021
Project: Research project

Simplicity in Eulerian circuits: Uniqueness and safety
Obscura Acosta, N. & Tomescu, A. I., Jan 2024, In: Information Processing Letters. 183, p. 106421
Research output: Contribution to journal › Article › Scientific › peer-review

Open Access
File
Algorithms and Complexity on Indexing Founder Graphs
Equi, M., Norri, T., Alanko, J., Cazaux, B., Tomescu, A. & Makinen, V., Jun 2023, In: Algorithmica. 85, 6, p. 1586-1623 38 p.
Research output: Contribution to journal › Article › Scientific › peer-review

Open Access
File
Breeze 2.0: an interactive web-tool for visual analysis and comparison of drug response data
Potdar, S., Ianevski, F., Ianevski, A., Tanoli, Z., Wennerberg, K., Seashore-Ludlow, B., Kallioniemi, O., Östling, P., Aittokallio, T. & Saarela, J., 5 Jul 2023, In: Nucleic Acids Research. 51, W1, p. W57-W61 5 p.
Research output: Contribution to journal › Article › Scientific › peer-review

Open Access
File
Chaining for accurate alignment of erroneous long reads to acyclic variation graphs
Ma, J., Caceres Reyes, M. A., Salmela, L., Mäkinen, V. & Tomescu, A., Aug 2023, In: Bioinformatics. 39, 8, 10 p.
Research output: Contribution to journal › Article › Scientific › peer-review

Open Access
File
Chaining of Maximal Exact Matches in Graphs
Rizzo, N., Caceres Reyes, M. A. & Mäkinen, V., 2023, String Processing and Information Retrieval. SPIRE 2023. Cham: Springer, p. 353–366 (Lecture Notes in Computer Science; vol. 14240).
Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review

Open Access
File

Väitöskomitean jäsen
Veli Mäkinen (Opponent)
Jul 2023
Activity: Examination types › Opponent of doctoral dissertation
Sequences workshop
Veli Mäkinen (Invited speaker)
May 2023
Activity: Talk or presentation types › Invited talk
Andrea Cracco
Alexandru Tomescu (Host)
30 Aug 2023 → 14 Sep 2023
Activity: Hosting a visitor types › Academic visit at UH
ISMB/ECCB 2023 (Event)
Veli Mäkinen (Programme Committee Member)
Feb 2023
Activity: Publication peer-review and editorial work types › Peer review of manuscripts
Workshop on Algorithms in Bioinformatics (WABI 2023) (Event)
Veli Mäkinen (Programme Committee Member)
May 2023
Activity: Publication peer-review and editorial work types › Peer review of manuscripts

Alberto Apostolico Best Paper Award
Puglisi, Simon (Recipient), Raman, Rajeev (Recipient), Belazzougui, Djamal (Recipient) & Kosolobov, Dmitry (Recipient), 6 Jul 2021
Prize: Prizes and awards

University of Helsinki: Researchers Identified Factors That Turn Normal Cells Into Liver Cancer Cells
Sampsa Hautaniemi & Biswajyoti Sahu
08/09/2021
1 item of Media coverage
Press/Media: Press / Media
388123-2021: Finland-Helsingin yliopisto: Services provided by medical laboratories
Sampsa Hautaniemi
30/07/2021
1 item of Media coverage
Press/Media: Press / Media
Tender Notice: HELSINGIN YLIOPISTO Seeks "Next Generation Sequencing Services for Decider" (118211-2021)
Sampsa Hautaniemi
09/03/2021
1 item of Media coverage
Press/Media: Press / Media
118211-2021: Finland-Helsinki: Services provided by medical laboratories
Sampsa Hautaniemi
09/03/2021
1 item of Media coverage
Press/Media: Press / Media
Next Generation Sequencing Services for Decider
Sampsa Hautaniemi
09/03/2021
1 item of Media coverage
Press/Media: Press / Media

Bioinformatics

International and National Collaboration

Dive into details

Tero Aittokallio

Sampsa Hautaniemi

Liisa Holm

Juha Kärkkäinen

Ari Löytynoja

Biodata Analytics Unit

DECIDER: DECIDER (Clinical Decision via Integrating Multiple Data Levels to Overcome Chemotherapy Resistance in High-Grade Serous Ovarian Cancer)

Suomalais-Ugrilainen muinaisgenomi

Elucidation of mechanisms of action of the natural stilbenoid pinosylvin via network pharmacology computational methods

Gene-culture evolution in music

HiLIFE Grand Challenge "Combatting microbial drug resistance"

Simplicity in Eulerian circuits: Uniqueness and safety

Algorithms and Complexity on Indexing Founder Graphs

Breeze 2.0: an interactive web-tool for visual analysis and comparison of drug response data

Chaining for accurate alignment of erroneous long reads to acyclic variation graphs

Chaining of Maximal Exact Matches in Graphs

Väitöskomitean jäsen

Sequences workshop

Andrea Cracco

ISMB/ECCB 2023 (Event)

Workshop on Algorithms in Bioinformatics (WABI 2023) (Event)

Alberto Apostolico Best Paper Award

University of Helsinki: Researchers Identified Factors That Turn Normal Cells Into Liver Cancer Cells

388123-2021: Finland-Helsingin yliopisto: Services provided by medical laboratories

Tender Notice: HELSINGIN YLIOPISTO Seeks "Next Generation Sequencing Services for Decider" (118211-2021)

118211-2021: Finland-Helsinki: Services provided by medical laboratories

Next Generation Sequencing Services for Decider

Bioinformatics

International and National Collaboration

Profiles

Equipment

Projects

Publications

Activities

Prizes

Press/Media