Projects per year
International and National Collaboration
Publications and projects within past five years.
Profiles
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Tero Aittokallio
- Institute for Molecular Medicine Finland - Senior Researcher
- Helsinki Institute for Information Technology
- Bioinformatics
- Doctoral Programme in Biomedicine - Supervisor for doctoral programme
- Doctoral Programme in Clinical Research - Supervisor for doctoral programme
- Doctoral Programme in Drug Research - Supervisor for doctoral programme
- Doctoral Programme in Integrative Life Science - Supervisor for doctoral programme
Person: U3 Research and teaching staff, UH
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Sampsa Hautaniemi
- Department of Biochemistry and Developmental Biology - Professor
- Sampsa Hautaniemi / Principal Investigator
- Bioinformatics
- Doctoral Programme in Biomedicine - Supervisor for doctoral programme
- Doctoral Programme in Clinical Research - Supervisor for doctoral programme
- Doctoral Programme in Integrative Life Science - Supervisor for doctoral programme
Person: UH, U4 Research and teaching staff
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Liisa Holm
- Organismal and Evolutionary Biology Research Programme - Professor
- Institute of Biotechnology
- Bioinformatics
- Computational genomics
- Doctoral Programme in Integrative Life Science - Supervisor for doctoral programme
Person: UH, U4 Research and teaching staff
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Juha Kärkkäinen
- Department of Computer Science - University Lecturer
- Helsinki Institute for Information Technology
- Algorithmic Bioinformatics
- Practical Algorithms and Data Structures on Strings research group / Juha Kärkkäinen
- Bioinformatics
- Doctoral Programme in Computer Science - Supervisor for doctoral programme
Person: U3 Research and teaching staff, UH
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Ari Löytynoja
- Institute of Biotechnology - Research Director
- Bioinformatics
- Doctoral Programme in Integrative Life Science - Supervisor for doctoral programme
Person: UH, U4 Research and teaching staff
Equipment
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Biodata Analytics Unit
Ville Mustonen (Manager), Mirkka Jones (Other), Pasi Rastas (Other), Jukka Siren (Other) & Fatemehsadat Seyednasrollah (Other)
Institute of BiotechnologyFacility/equipment: Research Laboratory
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DECIDER: DECIDER (Clinical Decision via Integrating Multiple Data Levels to Overcome Chemotherapy Resistance in High-Grade Serous Ovarian Cancer)
Korpisaari (ex. Tiilikka), P., Hautaniemi, S. & Mansnérus, J.
01/02/2021 → 31/01/2026
Project: Research project
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Suomalais-Ugrilainen muinaisgenomi
Onkamo, P., Oikkonen, J., Översti, S., Salmela, E., Salo, K. H., Nordqvist, K. & Junno, A.
Koneen Säätiö, Jane and Aatos Erkko Foundation
01/01/2016 → …
Project: Research project
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Elucidation of mechanisms of action of the natural stilbenoid pinosylvin via network pharmacology computational methods
Kibble, M. M., Aittokallio, T., Mäkelä, S., Saarinen, N. & Martinez Chacon , G.
01/01/2014 → …
Project: Research project
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Gene-culture evolution in music
Ukkola-Vuoti, L., Oikkonen, J., Onkamo, P., Raijas, P. & Karma, K.
01/04/2002 → …
Project: Research project
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HiLIFE Grand Challenge: Combatting Antimicrobial Drug Resistance
01/10/2018 → 31/12/2021
Project: Research project
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Artificial intelligence for drug response prediction in disease models
Ballester, P. J., Stevens, R., Haibe-Kains, B., Huang, R. S. & Aittokallio, T., 17 Jan 2022, In: Briefings in Bioinformatics. 23, 1, 3 p., 450.Research output: Contribution to journal › Editorial › Scientific › peer-review
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Fully-automated and ultra-fast cell-type identification using specific marker combinations from single-cell transcriptomic data
Ianevski, A., Giri, A. K. & Aittokallio, T., 10 Mar 2022, In: Nature Communications. 13, 10 p., 1246.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
HGGA: hierarchical guided genome assembler
Walve, R. & Salmela, L., 7 May 2022, In: BMC Bioinformatics. 23, 17 p., 167.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Implementing a Functional Precision Medicine Tumor Board for Acute Myeloid Leukemia
Malani, D., Kumar, A., Brück, O., Kontro, M., Yadav, B., Hellesoy, M., Kuusanmäki, H., Dufva, O., Kankainen, M., Eldfors, S., Potdar, S., Saarela, J., Turunen, L., Parsons, A., Västrik, I., Kivinen, K., Saarela, J., Räty, R., Lehto, M., Wolf, M. & 7 others, , Feb 2022, In: Cancer Discovery. 12, 2, p. 388-401 14 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Longitudinal single-cell RNA-seq analysis reveals stress-promoted chemoresistance in metastatic ovarian cancer
Zhang, K., Erkan, E. P., Jamalzadeh, S., Dai, J., Andersson, N., Kaipio, K., Lamminen, T., Mansuri, N., Huhtinen, K., Carpen, O., Hietanen, S., Oikkonen, J., Hynninen, J., Virtanen, A., Häkkinen, A., Hautaniemi, S. & Väharautio, A., Feb 2022, In: Science Advances. 8, 8, 18 p., 1831.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile
Activities
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Founder graphs and sequences for pangenomics
Veli Mäkinen (Speaker)
Feb 2022Activity: Talk or presentation types › Oral presentation
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Massimo Cairo
Alexandru Tomescu (Host)
20 Mar 2022 → 2 Apr 2022Activity: Hosting a visitor types › Academic visit at UH
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33rd International Workshop on Combinatorial Algorithms
Veli Mäkinen (Scientific Committee Member)
Jan 2022 → Apr 2022Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars
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Davide Martincigh
Alexandru Tomescu (Host)
2 May 2022 → 1 Jun 2022Activity: Hosting a visitor types › Academic visit at UH
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Brendan Mumey
Alexandru Tomescu (Host)
14 May 2022 → 21 May 2022Activity: Hosting a visitor types › Academic visit at UH
Prizes
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Alberto Apostolico Best Paper Award
Puglisi, Simon (Recipient), Raman, R. (Recipient), Belazzougui, D. (Recipient) & Kosolobov, D. (Recipient), 6 Jul 2021
Prize: Prizes and awards
Press / Media
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University of Helsinki: Researchers Identified Factors That Turn Normal Cells Into Liver Cancer Cells
Sampsa Hautaniemi & Biswajyoti Sahu
08/09/2021
1 item of Media coverage
Press/Media: Press / Media
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388123-2021: Finland-Helsingin yliopisto: Services provided by medical laboratories
30/07/2021
1 item of Media coverage
Press/Media: Press / Media
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118211-2021: Finland-Helsinki: Services provided by medical laboratories
09/03/2021
1 item of Media coverage
Press/Media: Press / Media
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Tender Notice: HELSINGIN YLIOPISTO Seeks "Next Generation Sequencing Services for Decider" (118211-2021)
09/03/2021
1 item of Media coverage
Press/Media: Press / Media
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Next Generation Sequencing Services for Decider
09/03/2021
1 item of Media coverage
Press/Media: Press / Media