Publications 2001 2020

2016

Multiple Output Regression with Latent Noise

Gillberg, J., Marttinen, P., Pirinen, M., Kangas, A. J., Soininen, P., Ali, M., Havulinna, A. S., Järvelin, M-R., Ala-Korpela, M. & Kaski, S., 1 Jan 2016, In : Journal of Machine Learning Research. 17, 1, p. 4170-4204 35 p.

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New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk

Lu, Y., Day, F. R., Gustafsson, S., Buchkovich, M. L., Na, J., Bataille, V., Cousminer, D. L., Dastani, Z., Drong, A. W., Esko, T., Evans, D. M., Falchi, M., Feitosa, M. F., Ferreira, T., Hedman, A. K., Haring, R., Hysi, P. G., Iles, M. M., Justice, A. E., Kanoni, S. & 239 othersLagou, V., Li, R., Li, X., Locke, A., Lu, C., Magi, R., Perry, J. R. B., Pers, T. H., Qi, Q., Sanna, M., Schmidt, E. M., Scott, W. R., Shungin, D., Teumer, A., Vinkhuyzen, A. A. E., Walker, R. W., Westra, H-J., Zhang, M., Zhang, W., Zhao, J. H., Zhu, Z., Afzal, U., Ahluwalia, T. S., Bakker, S. J. L., Bellis, C., Bonnefond, A., Borodulin, K., Buchman, A. S., Cederholm, T., Choh, A. C., Choi, H. J., Curran, J. E., de Groot, L. C. P. G. M., De Jager, P. L., Dhonukshe-Rutten, R. A. M., Enneman, A. W., Eury, E., Evans, D. S., Forsen, T., Friedrich, N., Fumeron, F., Garcia, M. E., Gartner, S., Han, B-G., Havulinna, A. S., Hayward, C., Hernandez, D., Hillege, H., Ittermann, T., Kent, J. W., Kolcic, I., Laatikainen, T., Lahti, J., Leach, I. M., Lee, C. G., Lee, J-Y., Liu, T., Liu, Y., Lobbens, S., Loh, M., Lyytikainen, L-P., Medina-Gomez, C., Michaelsson, K., Nalls, M. A., Nielson, C. M., Oozageer, L., Pascoe, L., Paternoster, L., Polasek, O., Ripatti, S., Sarzynski, M. A., Shin, C. S., Narancic, N. S., Spira, D., Srikanth, P., Steinhagen-Thiessen, E., Sung, Y. J., Swart, K. M. A., Taittonen, L., Tanaka, T., Tikkanen, E., van der Velde, N., van Schoor, N. M., Verweij, N., Wright, A. F., Yu, L., Zmuda, J. M., Pellikka, N., Forrester, T., Grarup, N., Jackson, A. U., Kristiansson, K., Kuulasmaa, T., Kuusisto, J., Lichtner, P., Luan, J., Mahajan, A., Mannisto, S., Palmer, C. D., Ried, J. S., Scott, R. A., Stancakova, A., Wagner, P. J., Demirkan, A., Doring, A., Gudnason, V., Kiel, D. P., Kuhnel, B., Mangino, M., Mcknight, B., Menni, C., O'Connell, J. R., Oostra, B. A., Shuldiner, A. R., Song, K., Vandenput, L., van Duijn, C. M., Vollenweider, P., White, C. C., Boehnke, M., Boettcher, Y., Cooper, R. S., Forouhi, N. G., Gieger, C., Grallert, H., Hingorani, A., Jorgensen, T., Jousilahti, P., Kivimaki, M., Kumari, M., Laakso, M., Langenberg, C., Linneberg, A., Luke, A., Mckenzie, C. A., Palotie, A., Pedersen, O., Peters, A., Strauch, K., Tayo, B. O., Wareham, N. J., Bennett, D. A., Bertram, L., Blangero, J., Bluher, M., Bouchard, C., Campbell, H., Cho, N. H., Cummings, S. R., Czerwinski, S. A., Demuth, I., Eckardt, R., Eriksson, J. G., Ferrucci, L., Franco, O. H., Froguel, P., Gansevoort, R. T., Hansen, T., Harris, T. B., Hastie, N., Heliovaara, M., Hofman, A., Jordan, J. M., Jula, A., Kahonen, M., Kajantie, E., Knekt, P. B., Koskinen, S., Kovacs, P., Lehtimaki, T., Lind, L., Liu, Y., Orwoll, E. S., Osmond, C., Perola, M., Perusse, L., Raitakari, O. T., Rankinen, T., Rao, D. C., Rice, T. K., Rivadeneira, F., Rudan, I., Salomaa, V., Sorensen, T. I. A., Stumvoll, M., Tonjes, A., Towne, B., Tranah, G. J., Tremblay, A., Uitterlinden, A. G., van der Harst, P., Vartiainen, E., Viikari, J. S., Vitart, V., Vohl, M-C., Volzke, H., Walker, M., Wallaschofski, H., Wild, S., Wilson, J. F., Yengo, L., Bishop, D. T., Borecki, I. B., Chambers, J. C., Cupples, L. A., Dehghan, A., Deloukas, P., Fatemifar, G., Fox, C., Furey, T. S., Franke, L., Han, J., Hunter, D. J., Karjalainen, J., Karpe, F., Kaplan, R. C., Kooner, J. S., McCarthy, M. I., Murabito, J. M., Morris, A. P., Bishop, J. A. N., North, K. E., Ohlsson, C., Ong, K. K., Prokopenko, I., Richards, J. B., Schadt, E. E., Spector, T. D., Widen, E., Willer, C. J., Yang, J., Ingelsson, E., Mohlke, K. L., Hirschhorn, J. N., Pospisilik, J. A., Zillikens, M. C., Lindgren, C., Kilpelainen, T. O. & Loos, R. J. F., Feb 2016, In : Nature Communications. 7, 15 p., 10495.

Research output: Contribution to journalArticleScientificpeer-review

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No Association of Coronary Artery Disease with X-Chromosomal Variants in Comprehensive International Meta-Analysis

Loley, C., Alver, M., Assimes, T. L., Bjonnes, A., Goel, A., Gustafsson, S., Hernesniemi, J., Hopewell, J. C., Kanoni, S., Kleber, M. E., Lau, K. W., Lu, Y., Lyytikainen, L-P., Nelson, C. P., Nikpay, M., Qu, L., Salfati, E., Scholz, M., Tukiainen, T., Willenborg, C. & 58 othersWon, H-H., Zeng, L., Zhang, W., Anand, S. S., Beutner, F., Bottinger, E. P., Clarke, R., Dedoussis, G., Do, R., Esko, T., Eskola, M., Farrall, M., Gauguier, D., Giedraitis, V., Granger, C. B., Hall, A. S., Hamsten, A., Hazen, S. L., Huang, J., Kahonen, M., Kyriakou, T., Laaksonen, R., Lind, L., Lindgren, C., Magnusson, P. K. E., Marouli, E., Mihailov, E., Morris, A. P., Nikus, K., Pedersen, N., Rallidis, L., Salomaa, V., Shah, S. H., Stewart, A. F. R., Thompson, J. R., Zalloua, P. A., Chambers, J. C., Collins, R., Ingelsson, E., Iribarren, C., Karhunen, P. J., Kooner, J. S., Lehtimaki, T., Loos, R. J. F., Maerz, W., McPherson, R., Metspalu, A., Reilly, M. P., Ripatti, S., Sanghera, D. K., Thiery, J., Watkins, H., Deloukas, P., Kathiresan, S., Samani, N. J., Schunkert, H., Erdmann, J. & Koenig, I. R., 12 Oct 2016, In : Scientific Reports. 6, 9 p., 35278.

Research output: Contribution to journalArticleScientificpeer-review

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On the Identifiability of Transmission Dynamic Models for Infectious Diseases

Lintusaari, J., Gutmann, M. U., Kaski, S. & Corander, J., Mar 2016, In : Genetics. 202, 3, p. 911-918 8 p.

Research output: Contribution to journalArticleScientificpeer-review

On the inconsistency of ℓ1-penalised sparse precision matrix estimation

Heinävaara, O., Leppä-Aho, J., Corander, J. & Honkela, A., 13 Dec 2016, In : BMC Bioinformatics. 17, Suppl 16, p. 99-107 9 p.

Research output: Contribution to journalArticleScientificpeer-review

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Orthogonal parallel MCMC methods for sampling and optimization

Martino, L., Elvira, V., Luengo, D., Corander, J. & Louzada, F., Nov 2016, In : Digital Signal Processing. 58, p. 64-84 21 p.

Research output: Contribution to journalArticleScientificpeer-review

Rare Functional Variant in TM2D3 is Associated with Late-Onset Alzheimer's Disease

Jakobsdottir, J., van der Lee, S. J., Bis, J. C., Chouraki, V., Li-Kroeger, D., Yamamoto, S., Grove, M. L., Naj, A., Vronskaya, M., Salazar, J. L., DeStefano, A. L., Brody, J. A., Smith, A. V., Amin, N., Sims, R., Ibrahim-Verbaas, C. A., Choi, S-H., Satizabal, C. L., Lopez, O. L., Beiser, A. & 32 othersIkram, M. A., Garcia, M. E., Hayward, C., Varga, T. V., Ripatti, S., Franks, P. W., Hallmans, G., Rolandsson, O., Jansson, J-H., Porteous, D. J., Salomaa, V., Eiriksdottir, G., Rice, K. M., Bellen, H. J., Levy, D., Uitterlinden, A. G., Emilsson, V., Rotter, J. I., Aspelund, T., O'Donnell, C. J., Fitzpatrick, A. L., Launer, L. J., Hofman, A., Wang, L-S., Williams, J., Schellenberg, G. D., Boerwinkle, E., Psaty, B. M., Seshadri, S., Shulman, J. M., Cohorts Heart Aging Res Genomic Ep & Genetic Environm Risk Alzheimer's, Oct 2016, In : PLoS Genetics. 12, 10, 17 p., 1006327.

Research output: Contribution to journalArticleScientificpeer-review

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Recursive learning for sparse Markov models

Xiong, J., Jääskinen, V. & Corander, J., 2016, In : Bayesian analysis. 11, 1, p. 247-263 17 p.

Research output: Contribution to journalArticleScientificpeer-review

RNA Production Delays Shape Transcriptional Response Dynamics

Honkela, A. J. H. & Rattray, M., 25 May 2016, In : Cell Systems. 2, 5, p. 291 1 p.

Research output: Contribution to journalArticleScientific

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Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes

Lees, J. A., Vehkala, M., Välimäki, N., Harris, S. R., Chewapreecha, C., Croucher, N. J., Marttinen, P., Davies, M. R., Steer, A. C., Tong, S. Y. C., Honkela, A., Parkhill, J., Bentley, S. & Corander, J., 16 Sep 2016, In : Nature Communications. 7, 8 p., 12797.

Research output: Contribution to journalArticleScientificpeer-review

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Simultaneous Predictive Gaussian Classifiers

Cui, Y., Siren, J., Koski, T. & Corander, J., Apr 2016, In : Journal of Classification. 33, 1, p. 73-102 30 p.

Research output: Contribution to journalArticleScientificpeer-review

Statistical properties of the allelic mismatch distribution in neutrally evolving haploid populations

Shubin, M., Numminen, S. E., Gutmann, U. M., Hanage, W. P. & Corander, J. I., 2016, (Submitted) In : American Naturalist.

Research output: Contribution to journalArticleScientificpeer-review

The Contribution of GWAS Loci in Familial Dyslipidemias

Ripatti, P., Ramo, J. T., Soderlund, S., Surakka, I., Matikainen, N., Pirinen, M., Pajukanta, P., Sarin, A-P., Service, S. K., Laurila, P-P., Ehnholm, C., Salomaa, V., Wilson, R. K., Palotie, A., Freimer, N. B., Taskinen, M-R. & Ripatti, S., May 2016, In : PLoS Genetics. 12, 5, 14 p., 1006078.

Research output: Contribution to journalArticleScientificpeer-review

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The de novo genome assembly and annotation of a female domestic dromedary of North African origin

Fitak, R. R., Mohandesan, E., Corander, J. & Burger, P. A., Jan 2016, In : Molecular Ecology Resources. 16, 1, p. 314-324 11 p.

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The impact of host metapopulation structure on the population genetics of colonizing bacteria

Numminen, S. E., Gutmann, U. M., Shubin, M., Marttinen, P. E., Méric, G., van Schaik, W., Coque, T. M., Baquero, F., Willems, R. J. L., Sheppard, S. K., Feil, E. J., Hanage, W. P. & Corander, J. I., 2016, In : Journal of Theoretical Biology. 396, p. 53-62 10 p.

Research output: Contribution to journalArticleScientificpeer-review

The role of local partial independence in learning of Bayesian networks

Pensar, J., Nyman, H., Lintusaari, J. & Corander, J., Feb 2016, In : International Journal of Approximate Reasoning. 69, p. 91-105 15 p.

Research output: Contribution to journalArticleScientificpeer-review

Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension

Surendran, P., Drenos, F., Young, R., Warren, H., Cook, J. P., Manning, A. K., Grarup, N., Sim, X., Barnes, D. R., Witkowska, K., Staley, J. R., Tragante, V., Tukiainen, T., Yaghootkar, H., Masca, N., Freitag, D. F., Ferreira, T., Giannakopoulou, O., Tinker, A., Harakalova, M. & 44 othersMihailov, E., Liu, C., Kraja, A. T., Nielsen, S. F., Rasheed, A., Samue, M., Zhao, W., Bonnycastle, L. L., Jackson, A. U., Narisu, N., Swift, A. J., Southam, L., Marten, J., Huyghe, J. R., Stancakova, A., Fava, C., Ohlsson, T., Matchan, A., Stirrups, K. E., Bork-Jensen, J., Gjesing, A. P., Kontto, J., Perola, M., Shaw-Hawkins, S., Havulinna, A. S., Kajantie, E., Tuomi, T., Groop, L., Palotie, A., Ripatti, S., CHARGE Heart Failure Consortiumm, EchoGen Consortiumm, Metastroke Consortiumm, Giant Consortiumm, EPIC-InterAct Consortium, Lifelines Cohort Study, Wellcome Trust Case Control Consor, Understanding Soc Sci Grp, EPIC-CVD Consortium, CHARGE Exome Chip Blood Pressure C, T2D-GENES Consortium, GoT2DGenes Consortium, ExomeBP Consortium & CHD Exome Consortium, Oct 2016, In : Nature Genetics. 48, 10, p. 1151-1161 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Transcriptome Remodeling Contributes to Epidemic Disease Caused by the Human Pathogen Streptococcus pyogenes

Beres, S. B., Kachroo, P., Nasser, W., Olsen, R. J., Zhu, L., Flores, A. R., de la Riva, I., Paez-Mayorga, J., Jimenez, F. E., Cantu, C., Vuopio, J., Jalava, J., Kristinsson, K. G., Gottfredsson, M., Corander, J., Fittipaldi, N., Di Luca, M. C., Petrelli, D., Vitali, L. A., Raiford, A. & 2 othersJenkins, L. & Musser, J. M., 2016, In : mBio. 7, 3, 14 p., ARTN 00403-16.

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Understanding pneumococcal serotype 1 biology through population genomic analysis

Chaguza, C., Cornick, J. E., Harris, S. R., Andam, C. P., Bricio-Moreno, L., Yang, M., Yalcin, F., Ousmane, S., Govindpersad, S., Senghore, M., Ebruke, C., Du Plessis, M., Kiran, A. M., Pluschke, G., Sigauque, B., McGee, L., Klugman, K. P., Turner, P., Corander, J., Parkhill, J. & 10 othersCollard, J-M., Antonio, M., von Gottberg, A., Heyderman, R. S., French, N., Kadioglu, A., Hanage, W. P., Everett, D. B., Bentley, S. D. & PAGe Consortium, 8 Nov 2016, In : BMC Infectious Diseases. 16, 14 p., 649.

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USF1 deficiency activates brown adipose tissue and improves cardiometabolic health

Laurila, P-P., Soronen, J., Kooijman, S., Forsstrom, S., Boon, M. R., Surakka, I., Kaiharju, E., Coomans, C. P., Van den Berg, S. A. A., Autio, A., Sarin, A-P., Kettunen, J., Tikkanen, E., Manninen, T., Metso, J., Silvennoinen, R., Merikanto, K., Ruuth, M., Perttila, J., Makela, A. & 27 othersIsomi, A., Tuomainen, A. M., Tikka, A., Ramadan, U. A., Seppala, I., Lehtimaki, T., Eriksson, J., Havulinna, A., Jula, A., Karhunen, P. J., Salomaa, V., Perola, M., Ehnholm, C., Lee-Rueckert, M., Van Eck, M., Roivainen, A., Taskinen, M-R., Palotie, L., Mervaala, E., Jalanko, A., Hohtola, E., Olkkonen, V. M., Ripatti, S., Kovanen, P. T., Rensen, P. C. N., Suomalainen, A. & Jauhiainenit, M., 27 Jan 2016, In : Science translational medicine. 8, 323, 19 p., ARTN 323ra13.

Research output: Contribution to journalArticleScientificpeer-review

Variation at 2q35 (PNKD and TMBIM1) influences colorectal cancer risk and identifies a pleiotropic effect with inflammatory bowel disease

Orlando, G., Law, P. J., Palin, K., Tuupanen, S., Gylfe, A., Hanninen, U. A., Cajuso, T., Tanskanen, T., Kondelin, J., Kaasinen, E., Sarin, A-P., Kaprio, J., Eriksson, J. G., Rissanen, H., Knekt, P., Pukkala, E., Jousilahti, P., Salomaa, V., Ripatti, S., Palotie, A. & 37 othersJärvinen, H., Renkonen-Sinisalo, L., Lepisto, A., Bohm, J., Mecklin, J-P., Al-Tassan, N. A., Palles, C., Martin, L., Barclay, E., Tenesa, A., Farrington, S., Timofeeva, M. N., Meyer, B. F., Wakil, S. M., Campbell, H., Smith, C. G., Idziaszczyk, S., Maughan, T. S., Kaplan, R., Kerr, R., Kerr, D., Buchanan, D. D., Win, A. K., Hopper, J., Jenkins, M., Lindor, N. M., Newcomb, P. A., Gallinger, S., Conti, D., Schumacher, F., Casey, G., Taipale, J., Cheadle, J. P., Dunlop, M. G., Tomlinson, I. P., Aaltonen, L. A. & Houlston, R. S., 1 Jun 2016, In : Human Molecular Genetics. 25, 11, p. 2349-2359 11 p.

Research output: Contribution to journalArticleScientificpeer-review

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Volume of Metric Balls in High-Dimensional Complex Grassmann Manifolds

Pitaval, R-A., Wei, L., Tirkkonen, O. & Corander, J., Sep 2016, In : IEEE Transactions on Information Theory. 62, 9, p. 5105-5116 12 p.

Research output: Contribution to journalArticleScientificpeer-review

What's in a Name? Species-Wide Whole-Genome Sequencing Resolves Invasive and Noninvasive Lineages of Salmonella enterica Serotype Paratyphi B

Connor, T. R., Owen, S. V., Langridge, G., Connell, S., Nair, S., Reuter, S., Dallman, T. J., Corander, J., Tabing, K. C., Le Hello, S., Fookes, M., Doublet, B., Zhou, Z., Feltwell, T., Ellington, M. J., Herrera, S., Gilmour, M., Cloeckaert, A., Achtman, M., Parkhill, J. & 5 othersWain, J., De Pinna, E., Weill, F-X., Peters, T. & Thomson, N., 2016, In : mBio. 7, 4, 9 p., e00527-16.

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2015

A Bayesian Predictive Model for Clustering Data of Mixed Discrete and Continuous Type

Blomstedt, P., Tang, J., Xiong, J., Granlund, C. & Corander, J., Mar 2015, In : IEEE Transactions on Pattern Analysis and Machine Intelligence. 37, 3, p. 489-498 10 p.

Research output: Contribution to journalArticleScientificpeer-review

A comprehensive 1000 Genomes-based genome-wide association meta-analysis of coronary artery disease

Nikpay, M., Goel, A., Won, H-H., Hall, L. M., Willenborg, C., Kanoni, S., Saleheen, D., Kyriakou, T., Nelson, C. P., Hopewell, J. C., Webb, T. R., Zeng, L., Dehghan, A., Alver, M., Armasu, S. M., Auro, K., Bjonnes, A., Chasman, D. I., Chen, S., Ford, I. & 132 othersFranceschini, N., Gieger, C., Grace, C., Gustafsson, S., Huang, J., Hwang, S-J., Kim, Y. K., Kleber, M. E., Lau, K. W., Lu, X., Lu, Y., Lyytikainen, L-P., Mihailov, E., Morrison, A. C., Pervjakova, N., Qu, L., Rose, L. M., Salfati, E., Saxena, R., Scholz, M., Smith, A. V., Tikkanen, E., Uitterlinden, A., Yang, X., Zhang, W., Zhao, W., de Andrade, M., de Vries, P. S., van Zuydam, N. R., Anand, S. S., Bertram, L., Beutner, F., Dedoussis, G., Frossard, P., Gauguier, D., Goodall, A. H., Gottesman, O., Haber, M., Han, B-G., Huang, J., Jalilzadeh, S., Kessler, T., Koenig, I. R., Lannfelt, L., Lieb, W., Lind, L., Lindgren, C. M., Lokki, M-L., Magnusson, P. K., Mallick, N. H., Mehra, N., Meitinger, T., Memon, F-R., Morris, A. P., Nieminen, M. S., Pedersen, N. L., Peters, A., Rallidis, L. S., Rasheed, A., Samuel, M., Shah, S. H., Sinisalo, J., Stirrups, K. E., Trompet, S., Wang, L., Zaman, K. S., Ardissino, D., Boerwinkle, E., Borecki, I. B., Bottinger, E. P., Buring, J. E., Chambers, J. C., Collins, R., Cupples, L. A., Danesh, J., Demuth, I., Elosua, R., Epstein, S. E., Esko, T., Feitosa, M. F., Franco, O. H., Franzosi, M. G., Granger, C. B., Gu, D., Gudnason, V., Hall, A. S., Hamsten, A., Harris, T. B., Hazen, S. L., Hengstenberg, C., Hofman, A., Ingelsson, E., Iribarren, C., Jukema, J. W., Karhunen, P. J., Kim, B-J., Kooner, J. S., Kullo, I. J., Lehtimaki, T., Loos, R. J. F., Melander, O., Metspalu, A., Maerz, W., Palmer, C. N., Perola, M., Quertermous, T., Rader, D. J., Ridker, P. M., Ripatti, S., Roberts, R., Salomaa, V., Sanghera, D. K., Schwartz, S. M., Seedorf, U., Stewart, A. F., Stott, D. J., Thiery, J., Zalloua, P. A., O'Donnell, C. J., Reilly, M. P., Assimes, T. L., Thompson, J. R., Erdmann, J., Clarke, R., Watkins, H., Kathiresan, S., McPherson, R., Deloukas, P., Schunkert, H., Samani, N. J., Farrall, M. & CARDIoGRAMplusC4D Consortium, Oct 2015, In : Nature Genetics. 47, 10, p. 1121-+ 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Adaptive importance sampling in signal processing

Bugallo, M. F., Martino, L. & Corander, J., Dec 2015, In : Digital Signal Processing. 47, p. 36-49 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Adiposity as a cause of cardiovascular disease: a Mendelian randomization study

Haegg, S., Fall, T., Ploner, A., Maegi, R., Fischer, K., Draisma, H. H. M., Kals, M., de Vries, P. S., Dehghan, A., Willems, S. M., Sarin, A-P., Kristiansson, K., Nuotio, M-L., Havulinna, A. S., de Bruijn, R. F. A. G., Ikram, M. A., Kuningas, M., Stricker, B. H., Franco, O. H., Benyamin, B. & 44 othersGieger, C., Hall, A. S., Huikari, V., Jula, A., Jarvelin, M-R., Kaakinen, M., Kaprio, J., Kobl, M., Mangino, M., Nelson, C. P., Palotie, A., Samani, N. J., Spector, T. D., Strachan, D. P., Tobin, M. D., Whitfield, J. B., Uitterlinden, A. G., Salomaa, V., Syvanen, A-C., Kuulasmaa, K., Magnusson, P. K., Esko, T., Hofman, A., de Geus, E. J. C., Lind, L., Giedraitis, V., Perola, M., Evans, A., Ferrieres, J., Virtamo, J., Kee, F., Tregouet, D-A., Arveiler, D., Amouyel, P., Gianfagna, F., Brambilla, P., Ripatti, S., van Duijn, C. M., Metspalu, A., Prokopenko, I., McCarthy, M. I., Pedersen, N. L., Ingelsson, E. & European Network Genetic Genomic E, Apr 2015, In : International Journal of Epidemiology. 44, 2, p. 578-586 9 p.

Research output: Contribution to journalArticleScientificpeer-review

A fast universal self-tuned sampler within Gibbs sampling

Martino, L., Yang, H., Luengo, D., Kanniainen, J. & Corander, J., Dec 2015, In : Digital Signal Processing. 47, p. 68-83 16 p.

Research output: Contribution to journalArticleScientificpeer-review

Age- and Sex-Specific Causal Effects of Adiposity on Cardiovascular Risk Factors

Fall, T., Hagg, S., Ploner, A., Maegi, R., Fischer, K., Draisma, H. H. M., Sarin, A-P., Benyamin, B., Ladenvall, C., Akerlund, M., Kals, M., Esko, T., Nelson, C. P., Kaakinen, M., Huikari, V., Mangino, M., Meirhaeghe, A., Kristiansson, K., Nuotio, M-L., Kobl, M. & 31 othersGrallert, H., Dehghan, A., Kuningas, M., de Vries, P. S., de Bruijn, R. F. A. G., Willems, S. M., Heikkila, K., Silventoinen, K., Pietilainen, K. H., Legry, V., Giedraitis, V., Goumidi, L., Syvanen, A-C., Strauch, K., Koenig, W., Lichtner, P., Herder, C., Palotie, A., Menni, C., Uitterlinden, A. G., Kuulasmaa, K., Havulinna, A. S., Moreno, L. A., Gonzalez-Gross, M., Evans, A., Tregouet, D-A., Perola, M., Kaprio, J., Groop, L., Ripatti, S. & ENGAGE Consortium, May 2015, In : Diabetes. 64, 5, p. 1841-1852 12 p.

Research output: Contribution to journalArticleScientificpeer-review

A Genome-Wide Association Study of a Biomarker of Nicotine Metabolism

Loukola, A., Buchwald, J., Gupta, R., Palviainen, T., Hallfors, J., Tikkanen, E., Korhonen, T., Ollikainen, M., Sarin, A-P., Ripatti, S., Lehtimaki, T., Raitakari, O., Salomaa, V., Rose, R. J., Tyndale, R. F. & Kaprio, J., Sep 2015, In : PLoS Genetics. 11, 9, 23 p., 1005498.

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A GRADIENT ADAPTIVE POPULATION IMPORTANCE SAMPLER

Elvira, V., Martino, L., Luengo, D. & Corander, J., 2015, 2015 IEEE INTERNATIONAL CONFERENCE ON ACOUSTICS, SPEECH, AND SIGNAL PROCESSING (ICASSP). p. 4075-4079 5 p. (International Conference on Acoustics Speech and Signal Processing ICASSP).

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

An Adaptive Population Importance Sampler: Learning From Uncertainty

Martino, L., Elvira, V., Luengo, D. & Corander, J., 15 Aug 2015, In : IEEE Transactions on Signal Processing. 63, 16, p. 4422-4437 16 p.

Research output: Contribution to journalArticleScientificpeer-review

ARK: Aggregation of Reads by K-Means for Estimation of Bacterial Community Composition

Koslicki, D., Chatterjee, S., Shahrivar, D., Walker, A. W., Francis, S. C., Fraser, L. J., Vehkaperae, M., Lan, Y. & Corander, J., 23 Oct 2015, In : PLoS One. 10, 10, 16 p., 0140644.

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Assessing allele-specific expression across multiple tissues from RNA-seq read data

Pirinen, M., Lappalainen, T., Zaitlen, N. A., Dermitzakis, E. T., Donnelly, P., McCarthy, M. I., Rivas, M. A. & GTEx Consortium, 1 Aug 2015, In : Bioinformatics. 31, 15, p. 2497-2504 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Baseline adjustment increases accurate interpretation of posturographic sway scores

Tietavainen, A., Corander, J. & Haeggstrom, E., Sep 2015, In : Gait & Posture. 42, 3, p. 285-288 4 p.

Research output: Contribution to journalArticleScientificpeer-review

Cell Specific eQTL Analysis without Sorting Cells

Westra, H-J., Arends, D., Esko, T., Peters, M. J., Schurmann, C., Schramm, K., Kettunen, J., Yaghootkar, H., Fairfax, B. P., Andiappan, A. K., Li, Y., Fu, J., Karjalainen, J., Platteel, M., Visschedijk, M., Weersma, R. K., Kasela, S., Milani, L., Tserel, L., Peterson, P. & 38 othersReinmaa, E., Hofman, A., Uitterlinden, A. G., Rivadeneira, F., Homuth, G., Petersmann, A., Lorbeer, R., Prokisch, H., Meitinger, T., Herder, C., Roden, M., Grallert, H., Ripatti, S., Perola, M., Wood, A. R., Melzer, D., Ferrucci, L., Singleton, A. B., Hernandez, D. G., Knight, J. C., Melchiotti, R., Lee, B., Poidinger, M., Zolezzi, F., Larbi, A., Wang, D. Y., van den Berg, L. H., Veldink, J. H., Rotzschke, O., Makino, S., Salomaa, V., Strauch, K., Voelker, U., van Meurs, J. B. J., Metspalu, A., Wijmenga, C., Jansen, R. C. & Franke, L., May 2015, In : PLoS Genetics. 11, 5, 17 p., 1005223.

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Climate induces seasonality in pneumococcal transmission

Numminen, E., Chewapreecha, C., Turner, C., Goldblatt, D., Nosten, F., Bentley, S. D., Turner, P. & Corander, J., 12 Jun 2015, In : Scientific Reports. 5, 14 p., 11344.

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Core Genome Multilocus Sequence Typing Scheme for High-Resolution Typing of Enterococcus faecium

de Been, M., Pinholt, M., Top, J., Bletz, S., Mellmann, A., van Schaik, W., Brouwer, E., Rogers, M., Kraat, Y., Bonten, M., Corander, J., Westh, H., Harmsen, D. & Willems, R. J. L., Dec 2015, In : Journal of Clinical Microbiology. 53, 12, p. 3788-3797 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Denoising Cluster Analysis

Zhang, R., Yang, Z. & Corander, J., 2015, Neural Information Processing: 22nd International Conference, ICONIP 2015, Istanbul, Turkey, November 9-12, 2015, Proceedings Part III. Arik, S., Huang, T., Lai, W. K. & Liu, Q. (eds.). Cham: Springer International Publishing AG, p. 435-442 8 p. (Lecture Notes in Computer Science; vol. 9491).

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Discovery and Fine-Mapping of Glycaemic and Obesity-Related Trait Loci Using High-Density Imputation

Horikoshi, M., Maegi, R., van de Bunt, M., Surakka, I., Sarin, A-P., Mahajan, A., Marullo, L., Thorleifsson, G., Haegg, S., Hottenga, J-J., Ladenvall, C., Ried, J. S., Winkler, T. W., Willems, S. M., Tsernikova, N., Esko, T., Beekman, M., Nelson, C. P., Willenborg, C., Wiltshire, S. & 31 othersFerreira, T., Fernandez, J., Gaulton, K. J., Steinthorsdottir, V., Hamsten, A., Magnusson, P. K. E., Willemsen, G., Milaneschi, Y., Robertson, N. R., Groves, C. J., Bennett, A. J., Lehtimaeki, T., Viikari, J. S., Rung, J., Lyssenko, V., Perola, M., Heid, I. M., Herder, C., Grallert, H., Mueller-Nurasyid, M., Roden, M., Hypponen, E., Isaacs, A., van Leeuwen, E. M., Karssen, L. C., Mihailov, E., Kaprio, J., Eriksson, J. G., Groop, L., Ripatti, S. & Engage Consortium, Jul 2015, In : PLoS Genetics. 11, 7, 24 p., 1005230.

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Ecological Overlap and Horizontal Gene Transfer in Staphylococcus aureus and Staphylococcus epidermidis

Meric, G., Miragaia, M., de Been, M., Yahara, K., Pascoe, B., Mageiros, L., Mikhail, J., Harris, L. G., Wilkinson, T. S., Rolo, J., Lamble, S., Bray, J. E., Jolley, K. A., Hanage, W. P., Bowden, R., Maiden, M. C. J., Mack, D., de Lencastre, H., Feil, E. J., Corander, J. & 1 othersSheppard, S. K., May 2015, In : Genome Biology and Evolution. 7, 5, p. 1313-1328 16 p.

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Education of maritime doctoral students as part of international university network

Kujala, P., Veitch, B., Ehlers, S., Leira, B., Khan, F. & Vanhatalo, J., 10 Dec 2015, International Conference on Education and Professional Development of Engineers in the Maritime Industry 2015. London: The Royal Institution of Naval Architects, p. 59-65 7 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientific

Effect of predicted protein-truncating genetic variants on the human transcriptome

Rivas, M. A., Pirinen, M., Conrad, D. F., Lek, M., Tsang, E. K., Karczewski, K. J., Maller, J. B., Kukurba, K. R., DeLuca, D. S., Fromer, M., Ferreira, P. G., Smith, K. S., Zhang, R., Zhao, F., Banks, E., Poplin, R., Ruderfer, D. M., Purcell, S. M., Tukiainen, T., Minikel, E. V. & 19 othersStenson, P. D., Cooper, D. N., Huang, K. H., Sullivan, T. J., Nedzel, J., Bustamante, C. D., Li, J. B., Daly, M. J., Guigo, R., Donnelly, P., Ardlie, K., Sammeth, M., Dermitzakis, E. T., McCarthy, M. I., Montgomery, S. B., Lappalainen, T., MacArthur, D. G., GTEx Consortium & Geuvadis Consortium, 8 May 2015, In : Science. 348, 6235, p. 666-669 4 p.

Research output: Contribution to journalArticleScientificpeer-review

Fast and accurate approximate inference of transcript expression from RNA-seq data

Hensman, J., Papastamoulis, P., Glaus, P., Honkela, A. J. H. & Rattray, M., 15 Dec 2015, In : Bioinformatics. 31, 24, p. 3881-3889 9 p.

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Gaussian process modelling of multiple short time series

Topa, H. & Honkela, A. J. H., 2015, ESANN 2015: Proceedings of the 23rd European Symposium on Artificial Neural Networks, Computational Intelligence and Machine Learning. ESANN, p. 83-88 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Gaussian process test for high-throughput sequencing time series: application to experimental evolution

Topa, H., Jonas, A., Kofler, R., Kosiol, C. & Honkela, A., 1 Jun 2015, In : Bioinformatics. 31, 11, p. 1762-1770 9 p.

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Gene Loss and Lineage-Specific Restriction-Modification Systems Associated with Niche Differentiation in the Campylobacter jejuni Sequence Type 403 Clonal Complex

Morley, L., McNally, A., Paszkiewicz, K., Corander, J., Meric, G., Sheppard, S. K., Blom, J. & Manning, G., Jun 2015, In : Applied and Environmental Microbiology. 81, 11, p. 3641-3647 7 p.

Research output: Contribution to journalArticleScientificpeer-review

General state-space population dynamics model for Bayesian stock assessment

Mäntyniemi, S. H. P., Whitlock, R. E., Perälä, T. A., Blomstedt, P. A., Vanhatalo, J. P., Rincón, M. M., Kuparinen, A. K., Pulkkinen, H. P. & Kuikka, O. S., 7 Aug 2015, In : ICES Journal of Marine Science. 72, 8, p. 2209-2222 14 p.

Research output: Contribution to journalArticleScientificpeer-review