Publications 2001 2020

2014

A genome-wide association study of anorexia nervosa

Boraska, V., Franklin, C. S., Floyd, J. A. B., Thornton, L. M., Huckins, L. M., Southam, L., Rayner, N. W., Tachmazidou, I., Klump, K. L., Treasure, J., Lewis, C. M., Schmidt, U., Tozzi, F., Kiezebrink, K., Hebebrand, J., Gorwood, P., Adan, R. A. H., Kas, M. J. H., Favaro, A., Santonastaso, P. & 156 othersFernandez-Aranda, F., Gratacos, M., Rybakowski, F., Dmitrzak-Weglarz, M., Kaprio, J., Keski-Rahkonen, A., Raevuori, A., Van Furth, E. F., 't Landt, M. C. T. S-O., Hudson, J. I., Reichborn-Kjennerud, T., Knudsen, G. P. S., Monteleone, P., Kaplan, A. S., Karwautz, A., Hakonarson, H., Berrettini, W. H., Guo, Y., Li, D., Schork, N. J., Komaki, G., Ando, T., Inoko, H., Esko, T., Fischer, K., Maennik, K., Metspalu, A., Baker, J. H., Cone, R. D., Dackor, J., DeSocio, J. E., Hilliard, C. E., O'Toole, J. K., Pantel, J., Szatkiewicz, J. P., Taico, C., Zerwas, S., Trace, S. E., Davis, O. S. P., Helder, S., Buehren, K., Burghardt, R., de Zwaan, M., Egberts, K., Ehrlich, S., Herpertz-Dahlmann, B., Herzog, W., Imgart, H., Scherag, A., Scherag, S., Zipfel, S., Boni, C., Ramoz, N., Versini, A., Brandys, M. K., Danner, U. N., de Kovel, C., Hendriks, J., Koeleman, B. P. C., Ophoff, R. A., Strengman, E., van Elburg, A. A., Bruson, A., Clementi, M., Degortes, D., Forzan, M., Tenconi, E., Docampo, E., Escaramis, G., Jimenez-Murcia, S., Lissowska, J., Rajewski, A., Szeszenia-Dabrowska, N., Slopien, A., Hauser, J., Karhunen, L., Meulenbelt, I., Slagboom, P. E., Tortorella, A., Maj, M., Dedoussis, G., Dikeos, D., Gonidakis, F., Tziouvas, K., Tsitsika, A., Papezova, H., Slachtova, L., Martaskova, D., Kennedy, J. L., Levitan, R. D., Yilmaz, Z., Huemer, J., Koubek, D., Merl, E., Wagner, G., Lichtenstein, P., Breen, G., Cohen-Woods, S., Farmer, A., McGuffin, P., Cichon, S., Giegling, I., Herms, S., Rujescu, D., Schreiber, S., Wichmann, H-E., Dina, C., Sladek, R., Gambaro, G., Soranzo, N., Julia, A., Marsal, S., Rabionet, R., Gaborieau, V., Dick, D. M., Palotie, A., Ripatti, S., Widen, E., Andreassen, O. A., Espeseth, T., Lundervold, A., Reinvang, I., Steen, V. M., Le Hellard, S., Mattingsdal, M., Ntalla, I., Bencko, V., Foretova, L., Janout, V., Navratilova, M., Gallinger, S., Pinto, D., Scherer, S. W., Aschauer, H., Carlberg, L., Schosser, A., Alfredsson, L., Ding, B., Klareskog, L., Padyukov, L., Courtet, P., Guillaume, S., Jaussent, I., Finan, C., Kalsi, G., Roberts, M., Logan, D. W., Peltonen, L., Ritchie, G. R. S., Barrett, J. C., Estivill, X., Hinney, A., Sullivan, P. F., Collier, D. A., Zeggini, E. & Bulik, C. M., Oct 2014, In : Molecular Psychiatry. 19, 10, p. 1085-1094 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Allele-specific regulation of DISC1 expression by miR-135b-5p

Rossi, M., Kilpinen, L. H., Muona, M., Surakka, I., Ingle, C., Lahtinen, J., Hennah, W., Ripatti, S. & Hovatta, I., Jun 2014, In : European Journal of Human Genetics. 22, 6, p. 840-843 4 p.

Research output: Contribution to journalArticleScientificpeer-review

AN ADAPTIVE POPULATION IMPORTANCE SAMPLER

Martino, L., Elvira, V., Luengo, D. & Corander, J., 2014, Unknown host publication. 5 p. (International Conference on Acoustics Speech and Signal Processing ICASSP).

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Assessing multivariate gene-metabolome associations with rare variants using Bayesian reduced rank regression

Marttinen, P., Pirinen, M., Sarin, A-P., Gillberg, J., Kettunen, J., Surakka, I., Kangas, A. J., Soininen, P., O'Reilly, P., Kaakinen, M., Kahonen, M., Lehtimaki, T., Ala-Korpela, M., Raitakari, O. T., Salomaa, V., Jarvelin, M-R., Ripatti, S. & Kaski, S., 15 Jul 2014, In : Bioinformatics. 30, 14, p. 2026-2034 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Association of vitamin D status with arterial blood pressure and hypertension risk: a mendelian randomisation study

Vimaleswaran, K. S., Cavadino, A., Berry, D. J., Jorde, R., Dieffenbach, A. K., Lu, C., Alves, A. C., Heerspink, H. J. L., Tikkanen, E., Eriksson, J., Wong, A., Mangino, M., Jablonski, K. A., Nolte, I. M., Houston, D. K., Ahluwalia, T. S., van der Most, P. J., Pasko, D., Zgaga, L., Thiering, E. & 34 othersVitart, V., Fraser, R. M., Huffman, J. E., de Boer, R. A., Schoettker, B., Saum, K-U., McCarthy, M. I., Dupuis, J., Herzig, K-H., Sebert, S., Pouta, A., Laitinen, J., Kleber, M. E., Navis, G., Lorentzon, M., Jameson, K., Arden, N., Cooper, J. A., Acharya, J., Hardy, R., Raitakari, O., Ripatti, S., Billings, L. K., Lahti, J., Osmond, C., Penninx, B. W., Rejnmark, L., Lohman, K. K., Eriksson, J. G., Kivimaki, M., LifeLines Cohort Study Investigato, ICBP, CHARGE Consortium & Global Blood Pressure Genetics Gl, Sep 2014, In : The Lancet diabetes & endocrinology. 2, 9, p. 719-729 11 p.

Research output: Contribution to journalArticleScientificpeer-review

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Bayesian clustering of DNA sequences using Markov chains and a stochastic partition model

Jääskinen, V., Parkkinen, V., Cheng, L. & Corander, J., Feb 2014, In : Statistical applications in genetics and molecular biology. 13, 1, p. 105-121 17 p.

Research output: Contribution to journalArticleScientificpeer-review

Bayesian Latent Variable Collapsing Model for Detecting Rare Variant Interaction Effect in Twin Study

He, L., Sillanpaa, M. J., Ripatti, S. & Pitkaniemi, J., May 2014, In : Genetic Epidemiology. 38, 4, p. 310-324 15 p.

Research output: Contribution to journalArticleScientificpeer-review

Bayesian predictive modeling and comparison of oil samples

Blomstedt, P., Gauriot, R., Viitala, N., Reinikainen, T. & Corander, J., Jan 2014, In : Journal of Chemometrics. 28, 1, p. 52-59 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Biomarker Profiling by Nuclear Magnetic Resonance Spectroscopy for the Prediction of All-Cause Mortality: An Observational Study of 17,345 Persons

Fischer, K., Kettunen, J., Wurtz, P., Haller, T., Havulinna, A. S., Kangas, A. J., Soininen, P., Esko, T., Tammesoo, M-L., Maegi, R., Smit, S., Palotie, A., Ripatti, S., Salomaa, V., Ala-Korpela, M., Perola, M. & Metspalu, A., Feb 2014, In : PLoS Medicine. 11, 2, 12 p., 1001606.

Research output: Contribution to journalArticleScientificpeer-review

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By-Catch of Grey Seals (Halichoerus grypus) in Baltic Fisheries-A Bayesian Analysis of Interview Survey

Vanhatalo, J., Vetemaa, M., Herrero, A., Aho, T. & Tiilikainen, R., 2014, In : PLoS One. 9, 11, 16 p., 113836.

Research output: Contribution to journalArticleScientificpeer-review

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Chromosome X-Wide Association Study Identifies Loci for Fasting Insulin and Height and Evidence for Incomplete Dosage Compensation

Tukiainen, T., Pirinen, M., Sarin, A-P., Ladenvall, C., Kettunen, J., Lehtimaeki, T., Lokki, M-L., Perola, M., Sinisalo, J., Vlachopoulou, E., Eriksson, J. G., Groop, L., Jula, A., Jaervelin, M-R., Raitakari, O. T., Salomaa, V. & Ripatti, S., Feb 2014, In : PLoS Genetics. 10, 2, 12 p.

Research output: Contribution to journalArticleScientificpeer-review

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Common variant at 16p11.2 conferring risk of psychosis

Steinberg, S., de Jong, S., Mattheisen, M., Costas, J., Demontis, D., Jamain, S., Pietiläinen, O. P. H., Lin, K., Papiol, S., Huttenlocher, J., Sigurdsson, E., Vassos, E., Giegling, I., Breuer, R., Fraser, G., Walker, N., Melle, I., Djurovic, S., Agartz, I., Tuulio-Henriksson, A. & 32 othersSuvisaari, J., Lönnqvist, J., Paunio, T., Olsen, L., Hansen, T., Ingason, A., Pirinen, M., Strengman, E., Hougaard, D. M., Orntoft, T., Didriksen, M., Hollegaard, M. V., Nordentoft, M., Abramova, L., Kaleda, V., Arrojo, M., Sanjuan, J., Arango, C., Etain, B., Bellivier, F., Meary, A., Schuerhoff, F., Szoke, A., Ribolsi, M., Magni, V., Siracusano, A., Sperling, S., Rehnstrom, K., Kilpinen, L. H., Palotie, A., GROUP & Wellcome Trust Case Control Consor, Jan 2014, In : Molecular Psychiatry. 19, 1, p. 108-114 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Cryptic ecology among host generalist Campylobacter jejuni in domestic animals

Sheppard, S. K., Cheng, L., Meric, G., De Haan, C. P. A., Llarena, A-K., Marttinen, P., Vidal, A., Ridley, A., Clifton-Hadley, F., Connor, T. R., Strachan, N. J. C., Forbes, K., Colles, F. M., Jolley, K. A., Bentley, S. D., Maiden, M. C. J., Hänninen, M-L., Parkhill, J., Hanage, W. P. & Corander, J., May 2014, In : Molecular Ecology. 23, 10, p. 2442-2451 10 p.

Research output: Contribution to journalArticleScientificpeer-review

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Dense genomic sampling identifies highways of pneumococcal recombination

Chewapreecha, C., Harris, S. R., Croucher, N. J., Turner, C., Marttinen, P., Cheng, L., Pessia, A., Aanensen, D. M., Mather, A. E., Page, A. J., Salter, S. J., Harris, D., Nosten, F., Goldblatt, D., Corander, J., Parkhill, J., Turner, P. & Bentley, S. D., Mar 2014, In : Nature Genetics. 46, 3, p. 305-+ 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Distribution and Medical Impact of Loss-of-Function Variants in the Finnish Founder Population

Sequencing Initiative Suomi, 1 Jul 2014, In : PLoS Genetics. 10, 7, 12 p., 1004494.

Research output: Contribution to journalArticleScientificpeer-review

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Evolution and transmission of drug-resistant tuberculosis in a Russian population

Casali, N., Nikolayevskyy, V., Balabanova, Y., Harris, S. R., Ignatyeva, O., Kontsevaya, I., Corander, J., Bryant, J., Parkhill, J., Nejentsev, S., Horstmann, R. D., Brown, T. & Drobniewski, F., Mar 2014, In : Nature Genetics. 46, 3, p. 279-+ 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Experiences in Bayesian Inference in Baltic Salmon Management

Kuikka, S., Vanhatalo, J., Mäntyniemi, S., Pulkkinen, H. & Corander, J., May 2014, In : Statistical Science. 29, 1, p. 42-49

Research output: Contribution to journalArticleScientificpeer-review

Exploration and retrieval of whole-metagenome sequencing samples

Seth, S., Valimaki, N., Kaski, S. & Honkela, A., 1 Sep 2014, In : Bioinformatics. 30, 17, p. 2471-2479 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Genome-wide association analysis identifies six new loci associated with forced vital capacity

Loth, D. W., Artigas, M. S., Gharib, S. A., Wain, L. V., Franceschini, N., Koch, B., Pottinger, T. D., Smith, A. V., Duan, Q., Oldmeadow, C., Lee, M. K., Strachan, D. P., James, A. L., Huffman, J. E., Vitart, V., Ramasamy, A., Wareham, N. J., Kaprio, J., Wang, X-Q., Trochet, H. & 140 othersKaonen, M., Flexeder, C., Albrecht, E., Lopez, L. M., de Jong, K., Thyagarajan, B., Alves, A. C., Enroth, S., Omenaas, E., Joshi, P. K., Fall, T., Vinuela, A., Launer, L. J., Loehr, L. R., Fornage, M., Li, G., Wik, J. B., Tang, W., Manichaikul, A., Lahousse, L., Harris, T. B., North, K. E., Rudnicka, A. R., Hui, J., Gu, X., Lumley, T., Wright, A. F., Hastie, N. D., Campbell, S., Kumar, R., Pin, I., Scott, R. A., Pietilainen, K. H., Surakka, I., Liu, Y., Holliday, E. G., Schulz, H., Heinrich, J., Davies, G., Vonk, J. M., Wojczynski, M., Pouta, A., Johansson, A., Wild, S. H., Ingelsson, E., Rivadeneira, F., Voezke, H., Hysi, P. G., Eiriksdottir, G., Morrison, A. C., Rotter, J. I., Gao, W., Postma, D. S., White, W. B., Rich, S. S., Hofman, A., Aspelund, T., Couper, D., Smith, L. J., Psaty, B. M., Lohman, K., Burchard, E. G., Uitterlinden, A. G., Garcia, M., Joubert, B. R., McArdle, W. L., Musk, A. B., Hansel, N., Heckbert, S. R., Zgaga, L., van Meurs, J. B. J., Navarro, P., Rudan, I., Oh, Y-M., Redline, S., Jarvis, D. L., Zhao, J. H., Rantanen, T., O'Connor, G. T., Ripatti, S., Scott, R. J., Karrasch, S., Grallert, H., Gaddis, N. C., Starr, J. M., Wijmenga, C., Minster, R. L., Lederer, D. J., Pekkanen, J., Gyllensten, U., Campbe, H., Morris, A. P., Glaeser, S., Hammond, C. J., Burkart, K. M., Beilby, J., Kritchevsky, S. B., Gucinason, V., Hancock, D. B., Williams, D., Polasek, O., Zemunik, T., Kolcic, I., Petrini, M. F., Wjst, M., Kim, W. J., Porteous, D. J., Scotland, G., Smith, B. H., Villanen, A., Heliovaara, M., Attia, J. R., Sayers, I., Hampel, R., Gieger, C., Deary, I. J., Boezen, H. M., Newman, A., Jarvelin, M-R., Wilson, J. F., Lind, L., Stricker, B. H., Teumer, A., Spector, T. D., Melen, E., Peters, M. J., Lange, L. A., Barr, R. G., Bracke, K. R., Verhamme, F. M., Sung, J., Hiemstra, P. S., Cassano, P. A., Sood, A., Hayward, C., Dupuis, J., Hall, I. P., Brusselle, G. G., Tobin, M. D. & London, S. J., Jul 2014, In : Nature Genetics. 46, 7, p. 669-677 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Genome-wide association study of sexual maturation in males and females highlights a role for body mass and menarche loci in male puberty

ReproGen Consortium & Early Growth Genetics EGG, 15 Aug 2014, In : Human Molecular Genetics. 23, 16, p. 4452-4464 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Genome-wide association study on detailed profiles of smoking behavior and nicotine dependence in a twin sample

Loukola, A., Wedenoja, J., Keskitalo-Vuokko, K., Broms, U., Korhonen, T., Ripatti, S., Sarin, A-P., Pitkaniemi, J., He, L., Happola, A., Heikkila, K., Chou, Y-L., Pergadia, M. L., Heath, A. C., Montgomery, G. W., Martin, N. G., Madden, P. A. F. & Kaprio, J., May 2014, In : Molecular Psychiatry. 19, 5, p. 615-624 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility

Mahajan, A., Go, M. J., Zhang, W., Below, J. E., Gaulton, K. J., Ferreira, T., Horikoshi, M., Johnson, A. D., Ng, M. C. Y., Prokopenko, I., Saleheen, D., Wang, X., Zeggini, E., Abecasis, G. R., Adair, L. S., Almgren, P., Atalay, M., Aung, T., Baldassarre, D., Balkau, B. & 317 othersBao, Y., Barnett, A. H., Barroso, I., Basit, A., Been, L. F., Beilby, J., Bell, G. I., Benediktsson, R., Bergman, R. N., Boehm, B. O., Boerwinkle, E., Bonnycastle, L. L., Burtt, N., Cai, Q., Campbell, H., Carey, J., Cauchi, S., Caulfield, M., Chan, J. C. N., Chang, L-C., Chang, T-J., Chang, Y-C., Charpentier, G., Chen, C-H., Chen, H., Chen, Y-T., Chia, K-S., Chidambaram, M., Chines, P. S., Cho, N. H., Cho, Y. M., Chuang, L-M., Collins, F. S., Cornelis, M. C., Couper, D. J., Crenshaw, A. T., van Dam, R. M., Danesh, J., Das, D., de Faire, U., Dedoussis, G., Deloukas, P., Dimas, A. S., Dina, C., Doney, A. S. F., Donnelly, P. J., Dorkhan, M., van Duijn, C., Dupuis, J., Edkins, S., Elliott, P., Emilsson, V., Erbel, R., Eriksson, J. G., Escobedo, J., Esko, T., Eury, E., Florez, J. C., Fontanillas, P., Forouhi, N. G., Forsen, T., Fox, C., Fraser, R. M., Frayling, T. M., Froguel, P., Frossard, P., Gao, Y., Gertow, K., Gieger, C., Gigante, B., Grallert, H., Grant, G. B., Groop, L. C., Groves, C. J., Grundberg, E., Guiducci, C., Hamsten, A., Han, B-G., Hara, K., Hassanali, N., Hattersley, A. T., Hayward, C., Hedman, A. K., Herder, C., Hofman, A., Holmen, O. L., Hovingh, K., Hreidarsson, A. B., Hu, C., Hu, F. B., Hui, J., Humphries, S. E., Hunt, S. E., Hunter, D. J., Hveem, K., Hydrie, Z. I., Ikegami, H., Illig, T., Ingelsson, E., Islam, M., Isomaa, B., Jackson, A. U., Jafar, T., James, A., Jia, W., Joeckel, K-H., Jonsson, A., Jowett, J. B. M., Kadowaki, T., Kang, H. M., Kanoni, S., Kao, W. H. L., Kathiresan, S., Kato, N., Katulanda, P., Keinanen-Kiukaanniemi, S. M., Kelly, A. M., Khan, H., Khaw, K-T., Khor, C-C., Kim, H-L., Kim, S., Kim, Y. J., Kinnunen, L., Klopp, N., Kong, A., Korpi-Hyovalti, E., Kowlessur, S., Kraft, P., Kravic, J., Kristensen, M. M., Krithika, S., Kumar, A., Kumate, J., Kuusisto, J., Kwak, S. H., Laakso, M., Lagou, V., Lakka, T. A., Langenberg, C., Langford, C., Lawrence, R., Leander, K., Lee, J-M., Lee, N. R., Li, M., Li, X., Li, Y., Liang, J., Liju, S., Lim, W-Y., Lind, L., Lindgren, C. M., Lindholm, E., Liu, C-T., Liu, J. J., Lobbens, S., Long, J., Loos, R. J. F., Lu, W., Luan, J., Lyssenko, V., Ma, R. C. W., Maeda, S., Maegi, R., Mannisto, S., Matthews, D. R., Meigs, J. B., Melander, O., Metspalu, A., Meyer, J., Mirza, G., Mihailov, E., Moebus, S., Mohan, V., Mohlke, K. L., Morris, A. D., Muehleisen, T. W., Mueller-Nurasyid, M., Musk, B., Nakamura, J., Nakashima, E., Navarro, P., Ng, P-K., Nica, A. C., Nilsson, P. M., Njolstad, I., Noethen, M. M., Ohnaka, K., Ong, T. H., Owen, K. R., Palmer, C. N. A., Pankow, J. S., Park, K. S., Parkin, M., Pechlivanis, S., Pedersen, N. L., Palotie, L., Perry, J. R. B., Peters, A., Pinidiyapathirage, J. M., Platou, C. G. P., Potter, S., Price, J. F., Qi, L., Radha, V., Rallidis, L., Rasheed, A., Rathmann, W., Rauramaa, R., Raychaudhuri, S., Rayner, N. W., Rees, S. D., Rehnberg, E., Ripatti, S., Robertson, N., Roden, M., Rossin, E. J., Rudan, I., Rybin, D., Saaristo, T. E., Salomaa, V., Saltevo, J., Samuel, M., Sanghera, D. K., Saramies, J., Scott, J., Scott, L. J., Scott, R. A., Segre, A. V., Sehmi, J., Sennblad, B., Shah, N., Shah, S., Shera, A. S., Shu, X. O., Shuldiner, A. R., Sigurdsson, G., Sijbrands, E., Silveira, A., Sim, X., Sivapalaratnam, S., Small, K. S., So, W. Y., Stancakova, A., Stefansson, K., Steinbach, G., Steinthorsdottir, V., Stirrups, K., Strawbridge, R. J., Stringham, H. M., Sun, Q., Suo, C., Syvanen, A-C., Takayanagi, R., Takeuchi, F., Tay, W. T., Teslovich, T. M., Thorand, B., Thorleifsson, G., Thorsteinsdottir, U., Tikkanen, E., Trakalo, J., Tremoli, E., Trip, M. D., Tsai, F. J., Tuomi, T., Tuomilehto, J., Uitterlinden, A. G., Valladares-Salgado, A., Vedantam, S., Veglia, F., Voight, B. F., Wang, C., Wareham, N. J., Wennauer, R., Wickremasinghe, A. R., Wilsgaard, T., Wilson, J. F., Wiltshire, S., Winckler, W., Wong, T. Y., Wood, A. R., Wu, J-Y., Wu, Y., Yamamoto, K., Yamauchi, T., Yang, M., Yengo, L., Yokota, M., Young, R., Zabaneh, D., Zhang, F., Zhang, R., Zheng, W., Zimmet, P. Z., Altshuler, D., Bowden, D. W., Cho, Y. S., Cox, N. J., Cruz, M., Hanis, C. L., Kooner, J., Lee, J-Y., Seielstad, M., Teo, Y. Y., Boehnke, M., Parra, E. J., Chambers, J. C., Tai, E. S., McCarthy, M. I., Morris, A. P., Meta, DIA. G. R., Network, A. G. E., Cons, S. A. T. D. SATD., C, M. A. T. . D. MATD. & Exploration, T. . D. G., 1 Mar 2014, In : Nature Genetics. 46, 3, p. 234+

Research output: Contribution to journalArticleScientificpeer-review

High Risk Population Isolate Reveals Low Frequency Variants Predisposing to Intracranial Aneurysms

Kurki, M. I., Gaal, E. I., Kettunen, J., Lappalainen, T., Menelaou, A., Anttila, V., van't Hof, F. N. G., von und zu Fraunberg, M., Helisalmi, S., Hiltunen, M., Lehto, H., Laakso, A., Kivisaari, R., Koivisto, T., Ronkainen, A., Rinne, J., Kiemeney, L. A. L., Vermeulen, S. H., Kaunisto, M. A., Eriksson, J. G. & 15 othersAromaa, A., Perola, M., Lehtimaki, T., Raitakari, O. T., Salomaa, V., Gunel, M., Dermitzakis, E. T., Ruigrok, Y. M., Rinkel, G. J. E., Niemela, M., Hernesniemi, J., Ripatti, S., de Bakker, P. I. W., Palotie, A. & Jaaskelainen, J. E., Jan 2014, In : PLoS Genetics. 10, 1, 12 p., 1004134.

Research output: Contribution to journalArticleScientificpeer-review

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Identification of enterotoxigenic Escherichia coli (ETEC) clades with long-term global distribution

von Mentzer, A., Connor, T. R., Wieler, L. H., Semmler, T., Iguchi, A., Thomson, N. R., Rasko, D. A., Joffre, E., Corander, J., Pickard, D., Wiklund, G., Svennerholm, A-M., Sjoling, A. & Dougan, G., Dec 2014, In : Nature Genetics. 46, 12, p. 1321-1326 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Inference of RNA Polymerase II Transcription Dynamics from Chromatin Immunoprecipitation Time Course Data

wa Maina, C., Honkela, A., Matarese, F., Grote, K., Stunnenberg, H. G., Reid, G., Lawrence, N. D. & Rattray, M., May 2014, In : PLoS Computational Biology. 10, 5, 17 p., e1003598.

Research output: Contribution to journalArticleScientificpeer-review

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Meta-Analysis of Genome-Wide Association Studies with Multivariate Traits

Cichonska, A., Marttinen, P., Ripatti, S., Rousu, J. & Pirinen, M., 2014, MLSB14: The eighth International Workshop on Machine Learning in Systems Biology 6-7 September 2014 Strasbourg, France. d'Alché-Buc, F. & Geurts, P. (eds.). p. 27-30 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Metabolic Signatures of Adiposity in Young Adults: Mendelian Randomization Analysis and Effects of Weight Change

Würtz, P., Wang, Q., Kangas, A. J., Richmond, R. C., Skarp, J., Tiainen, M., Tynkkynen, T., Soininen, P., Havulinna, A. S., Kaakinen, M., Viikari, J. S., Savolainen, M. J., Kahonen, M., Lehtimaki, T., Mannisto, S., Blankenberg, S., Zeller, T., Laitinen, J., Pouta, A., Mantyselka, P. & 9 othersVanhala, M., Elliott, P., Pietilainen, K. H., Ripatti, S., Salomaa, V., Raitakari, O. T., Jarvelin, M-R., Smith, G. D. & Ala-Korpela, M., Dec 2014, In : PLoS Medicine. 11, 12, 18 p., 1001765.

Research output: Contribution to journalArticleScientificpeer-review

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Molekyyligenetiikka

Ripatti, S. O., Surakka, I. L. & Sarin, A-P., 2014, Käyttäytymisgenetiikka - geeneistä yhteiskuntaan. Latvala, A. & Silventoinen, K. (eds.). Helsinki: Gaudeamus, p. 46-62 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientific

Multi-ethnic fine-mapping of 14 central adiposity loci

Liu, C-T., Buchkovich, M. L., Winkler, T. W., Heid, I. M., Borecki, I. B., Fox, C. S., Mohlke, K. L., North, K. E., Cupples, L. A., African Ancestry Anthropometry Gen, GIANT Consortium, Ripatti, S. O., Lokki, M-L. & Tuomi, T., 1 Sep 2014, In : Human Molecular Genetics. 23, 17, p. 4738-4744 7 p.

Research output: Contribution to journalArticleScientificpeer-review

On the Fluctuation of Mutual Information in Double Scattering MIMO Channels

Zheng, Z., Wei, L., Speicher, R., Müller, R., Hämäläinen, J. & Corander, J., 2014, International Zurich Seminar on Communications: February 26 – 28, 2014 : Proceedings. Zürich: ETH-Zürich , p. 104-107 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

ORTHOGONAL MCMC ALGORITHMS

Martino, L., Elvira, V., Luengo, D., Artes-Rodriguez, A. & Corander, J., 2014, 2014 IEEE WORKSHOP ON STATISTICAL SIGNAL PROCESSING (SSP). IEEE, p. 364-367 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Outage capacity of OSTBCs over pico-cellular MIMO channels

Wei, L., Zheng, Z., Corander, J. & Taricco, G., 2014, Information Theory (ISIT), 2014 IEEE International Symposium . IEEE, p. 616-620 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Parallel independent evolution of pathogenicity within the genus Yersinia

Reuter, S., Connor, T. R., Barquist, L., Walker, D., Feltwell, T., Harris, S. R., Fookes, M., Hall, M. E., Petty, N. K., Fuchs, T. M., Corander, J., Dufour, M., Ringwood, T., Savin, C., Bouchier, C., Martin, L., Miettinen, M., Shubin, M., Riehm, J. M., Laukkanen-Ninios, R. & 13 othersSihvonen, L. M., Siitonen, A., Skurnik, M., Falcao, J. P., Fukushima, H., Scholz, H. C., Prentice, M. B., Wren, B. W., Parkhill, J., Carniel, E., Achtman, M., McNally, A. & Thomson, N. R., 6 May 2014, In : Proceedings of the National Academy of Sciences of the United States of America. 111, 18, p. 6768-6773 6 p.

Research output: Contribution to journalArticleScientificpeer-review

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Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche

Perry, J. R. B., Day, F., Elks, C. E., Sulem, P., Thompson, D. J., Ferreira, T., He, C., Chasman, D. I., Esko, T., Thorleifsson, G., Albrecht, E., Ang, W. Q., Corre, T., Cousminer, D. L., Feenstra, B., Franceschini, N., Ganna, A., Johnson, A. D., Kjellqvist, S., Lunetta, K. L. & 35 othersMcMahon, G., Nolte, I. M., Paternoster, L., Porcu, E., Smith, A. V., Stolk, L., Teumer, A., Tsernikova, N., Tikkanen, E., Ulivi, S., Wagner, E. K., Amin, N., Bierut, L. J., Byrne, E. M., Hottenga, J-J., Koller, D. L., Mangino, M., Pers, T. H., Yerges-Armstrong, L. M., Zhao, J. H., Andrulis, I. L., Anton-Culver, H., Atsma, F., Bandinelli, S., Blomqvist, C., Eriksson, J. G., Nevanlinna, H., Palotie, A., Widen, E., Australian Ovarian Canc Study, GENICA Network, kConFabt LifeLines Cohort Study, InterAct Consortium, Early Growth Genetics EGG Consorti & Ripatti, S., 2 Oct 2014, In : Nature. 514, 7520, p. 92-+ 17 p.

Research output: Contribution to journalArticleScientificpeer-review

Proceedings of the Seventeenth International Conference on Artificial Intelligence and Statistics: AISTATS 2014

Kaski, S. (ed.) & Corander, J. (ed.), 2014, Journal of Machine Learning Research. (JMLR W&CP; vol. 33)

Research output: Book/ReportAnthology or special issueScientificpeer-review

Quality control and conduct of genome-wide association meta-analyses

Winkler, T. W., Day, F. R., Croteau-Chonka, D. C., Wood, A. R., Locke, A. E., Maegi, R., Ferreira, T., Fall, T., Graff, M., Justice, A. E., Luan, J., Gustafsson, S., Randall, J. C., Vedantam, S., Workalemahu, T., Kilpelainen, T. O., Scherag, A., Esko, T., Kutalik, Z., Heid, I. M. & 8 othersLoos, R. J. F., Genetic Invest Anthropometric Trai, Kaprio, J., Eriksson, J., Ripatti, S., Lokki, M-L., Tuomi, T. & Kivimäki, M., May 2014, In : Nature Protocols. 9, 5, p. 1192-1212 21 p.

Research output: Contribution to journalArticleScientificpeer-review

Random Projection Based Clustering for Population Genomics

Tasoulis, S., Cheng, L., Välimäki, N., Croucher, N., Harris, S., Hanage, W., Roos, T. & Corander, J., 2014, Big Data (Big Data), 2014 IEEE International Conference on . IEEE, p. 675 - 682

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Reappraisal of known malaria resistance loci in a large multicenter study

Rockett, K. A., Clarke, G. M., Fitzpatrick, K., Hubbart, C., Jeffreys, A. E., Rowlands, K., Craik, R., Jallow, M., Conway, D. J., Bojang, K. A., Pinder, M., Usen, S., Sisay-Joof, F., Sirugo, G., Toure, O., Thera, M. A., Konate, S., Sissoko, S., Niangaly, A., Poudiougou, B. & 63 othersMangano, V. D., Bougouma, E. C., Sirima, S. B., Modiano, D., Amenga-Etego, L. N., Ghansah, A., Koram, K. A., Wilson, M. D., Enimil, A., Evans, J., Amodu, O., Olaniyan, S., Apinjoh, T., Mugri, R., Ndi, A., Ndila, C. M., Uyoga, S., Macharia, A., Peshu, N., Williams, T. N., Manjurano, A., Riley, E., Drakeley, C., Reyburn, H., Nyirongo, V., Kachala, D., Molyneux, M., Dunstan, S. J., Phu, N. H., Quyen, N. T. N., Thai, C. Q., Hien, T. T., Manning, L., Laman, M., Siba, P., Karunajeewa, H., Allen, S., Allen, A., Davis, T. M. E., Michon, P., Mueller, I., Green, A., Molloy, S., Johnson, K. J., Kerasidou, A., Cornelius, V., Hart, L., Vanderwal, A., SanJoaquin, M., Band, G., Le, S. Q., Pirinen, M., Sepulveda, N., Spencer, C. C. A., Clark, T. G., Agbenyega, T., Achidi, E., Doumbo, O., Farrar, J., Marsh, K., Taylor, T., Kwiatkowski, D. P. & Netwo, M. G. E., 1 Nov 2014, In : Nature Genetics. 46, 11, p. 1197-1204 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Regularized Machine Learning in the Genetic Prediction of Complex Traits

Okser, S., Pahikkala, T., Airola, A., Salakoski, T., Ripatti, S. & Aittokallio, T., Nov 2014, In : PLoS Genetics. 10, 11, 9 p., 1004754.

Research output: Contribution to journalReview ArticleScientificpeer-review

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Re-sequencing Expands Our Understanding of the Phenotypic Impact of Variants at GWAS Loci

Service, S. K., Teslovich, T. M., Fuchsberger, C., Ramensky, V., Yajnik, P., Koboldt, D. C., Larson, D. E., Zhang, Q., Lin, L., Welch, R., Ding, L., McLellan, M. D., O'Laughlin, M., Fronick, C., Fulton, L. L., Magrini, V., Swift, A., Elliott, P., Jarvelin, M-R., Kaakinen, M. & 14 othersMcCarthy, M. I., Peltonen, L., Pouta, A., Bonnycastle, L. L., Collins, F. S., Narisu, N., Stringham, H. M., Tuomilehto, J., Ripatti, S., Fulton, R. S., Sabatti, C., Wilson, R. K., Boehnke, M. & Freimer, N. B., Jan 2014, In : PLoS Genetics. 10, 1, 12 p., 1004147.

Research output: Contribution to journalArticleScientificpeer-review

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Scenario based risk management for arctic shipping and operations

Ehlers, S., Kujula, P., Veitch, B., Khan, F. & Vanhatalo, J., 8 Jun 2014, ASME 2014 33rd International Conference on Ocean, Offshore and Arctic Engineering: Polar and Arctic Science and Technology. California, USA: The American Society of Mechanical Engineers, Vol. 10. 8 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

SEK: sparsity exploiting k-mer-based estimation of bacterial community composition

Chatterjee, S., Koslicki, D., Dong, S., Innocenti, N., Cheng, L., Lan, Y., Vehkapera, M., Skoglund, M., Rasmussen, L. K., Aurell, E. & Corander, J., 1 Sep 2014, In : Bioinformatics. 30, 17, p. 2423-2431 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Sparse Markov chains for sequence data

Jääskinen, V., Xiong, J., Corander, J. & Koski, T., Sep 2014, In : Scandinavian Journal of Statistics. 41, 3, p. 639–655 17 p.

Research output: Contribution to journalArticleScientificpeer-review

Stratified Graphical Models - Context-Specific Independence in Graphical Models

Nyman, H., Pensar, J., Koski, T. & Corander, J., Dec 2014, In : Bayesian analysis. 9, 4, p. 883-908 26 p.

Research output: Contribution to journalArticleScientificpeer-review

The Challenges of Genome-Wide Interaction Studies: Lessons to Learn from the Analysis of HDL Blood Levels

van Leeuwen, E. M., Smouter, F. A. S., Kam-Thong, T., Karbalai, N., Smith, A. V., Harris, T. B., Launer, L. J., Sitlani, C. M., Li, G., Brody, J. A., Bis, J. C., White, C. C., Jaiswal, A., Oostra, B. A., Hofman, A., Rivadeneira, F., Uitterlinden, A. G., Boerwinkle, E., Ballantyne, C. M., Gudnason, V. & 8 othersPsaty, B. M., Cupples, L. A., Jaervelin, M-R., Ripatti, S., Isaacs, A., Mueller-Myhsok, B., Karssen, L. C. & van Duijn, C. M., 20 Oct 2014, In : PLoS One. 9, 10, 13 p., e109290.

Research output: Contribution to journalArticleScientificpeer-review

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The learning for mixtures of multicausal interaction networks

Westerlind, H., Jääskinen, V., Corander, J., Hillert, J. & Koski, T., 2014, (Submitted) In : Statistics in Medicine.

Research output: Contribution to journalArticleScientificpeer-review

Toward Integrative Management Advice of Water Quality, Oil Spills, and Fishery in the Gulf of Finland: A Bayesian Approach

Rahikainen, M., Helle, I., Haapasaari, P., Oinonen, S., Kuikka, S., Vanhatalo, J., Mantyniemi, S. & Hoviniemi, K-M., Feb 2014, In : Ambio. 43, 1, p. 115-123 9 p.

Research output: Contribution to journalArticleScientificpeer-review

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Towards a Molecular Systems Model of Coronary Artery Disease

Abraham, G., Bhalala, O. G., de Bakker, P. I. W., Ripatti, S. & Inouye, M., Jun 2014, In : Current cardiology reports.. 16, 6, 10 p., 488.

Research output: Contribution to journalArticleScientificpeer-review

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Transcriptome Analysis Reveals Signature of Adaptation to Landscape Fragmentation

Somervuo, P., Kvist, J., Ikonen, S., Auvinen, P., Paulin, L., Koskinen, P., Holm, L., Taipale, M., Duplouy, A., Ruokolainen, A., Saarnio, S., Siren, J., Kohonen, J., Corander, J., Frilander, M. J., Ahola, V. & Hanski, I., 2 Jul 2014, In : PLoS One. 9, 7, 12 p., 101467.

Research output: Contribution to journalArticleScientificpeer-review

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Transfer of noncoding DNA drives regulatory rewiring in bacteria

Oren, Y., Smith, M. B., Johns, N. I., Zeevi, M. K., Biran, D., Ron, E. Z., Corander, J., Wang, H. H., Alm, E. J. & Pupko, T., 11 Nov 2014, In : Proceedings of the National Academy of Sciences of the United States of America. 111, 45, p. 16112-16117 6 p.

Research output: Contribution to journalArticleScientificpeer-review