Publications 2001 2020

2010

Founder population-specific HapMap panel increases power in GWA studies through improved imputation accuracy and CNV tagging

Surakka, I., Kristiansson, K., Anttila, V., Inouye, M., Barnes, C., Moutsianas, L., Salomaa, V., Daly, M., Palotie, A., Peltonen, L. & Ripatti, S., 2010, In : Genome Research. 20, 10, p. 1344-1351 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Genetic Association and Interaction Analysis of USF1 and APOA5 on Lipid Levels and Atherosclerosis

Laurila, P-P., Naukkarinen, J., Kristiansson, K., Ripatti, S., Kauttu, T., Silander, K., Salomaa, V., Perola, M., Karhunen, P. J., Barter, P. J., Ehnholm, C. & Peltonen, L., 2010, In : Arteriosclerosis, Thrombosis, and Vascular Biology. 30, p. 346-352 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Genetic effects on anger control and their interaction with alcohol intoxication: A self-report study

Johansson, A., Santtila, P., Corander, J., Alanko, K., Jern, P., von der Pahlen, B. & Sandnabba, NK., 2010, In : Biological Psychology. 85, 2, p. 291-298 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Genetic Variants Influencing Circulating Lipid Levels and Risk of Coronary Artery Disease

Waterworth, D. M., Ricketts, S. L., Song, K., Chen, L., Zhao, J. H., Ripatti, S., Aulchenko, Y. S., Zhang, W., Yuan, X., Lim, N., Luan, J., Ashford, S., Wheeler, E., Young, E. H., Hadley, D., Thompson, J. R., Braund, P. S., Johnson, T., Struchalin, M., Surakka, I. & 31 othersLuben, R., Khaw, K-T., Rodwell, S. A., Loos, R. J. F., Boekholdt, S. M., Inouye, M., Deloukas, P., Elliott, P., Schlessinger, D., Sanna, S., Scuteri, A., Jackson, A., Mohlke, K. L., Tuomilehto, J., Roberts, R., Stewart, A., Kesaeniemi, Y. A., Mahley, R. W., Grundy, S. M., McArdle, W., Cardon, L., Waeber, G., Vollenweider, P., Chambers, J. C., Boehnke, M., Abecasis, G. R., Salomaa, V., Jaervelin, M-R., Ruokonen, A., Peltonen, L. & Wellcome Trust Case Control Consor, 2010, In : Arteriosclerosis, Thrombosis, and Vascular Biology. 30, p. 2264-U566 35 p.

Research output: Contribution to journalArticleScientificpeer-review

Genome-wide association study identifies five loci associated with lung function

Repapi, E., Sayers, I., Wain, L. V., Burton, P. R., Johnson, T., Obeidat, M., Zhao, J. H., Ramasamy, A., Zhai, G., Vitart, V., Huffman, J. E., Igl, W., Albrecht, E., Deloukas, P., Henderson, J., Granell, R., McArdle, W. L., Rudnicka, A. R., Barroso, I., Loos, R. J. F. & 31 othersWareham, N. J., Mustelin, L., Rantanen, T., Surakka, I. L., Imboden, M., Wichmann, H. E., Grkovic, I., Jankovic, S., Zgaga, L., Hartikainen, A-L., Peltonen, L., Gyllensten, U., Johansson, A., Zaboli, G., Campbell, H., Wild, S. H., Wilson, J. F., Glaeser, S., Homuth, G., Voelzke, H., Mangino, M., Soranzo, N., Spector, T. D., Polasek, O., Rudan, I., Wright, A. F., Heliovaara, M., Ripatti, S. O., Pouta, A., Kaprio, J. & Wellcome Trust Case Control Consor, NSHD Resp Study Team, 2010, In : Nature Genetics. 42, p. 36-44 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Hundreds of variants clustered in genomic loci and biological pathways affect human height

Allen, H. L., Estrada, K., Lettre, G., Berndt, S. I., Weedon, M. N., Rivadeneira, F., Willer, C. J., Jackson, A. U., Vedantam, S., Raychaudhuri, S., Ferreira, T., Wood, A. R., Weyant, R. J., Segre, A. V., Speliotes, E. K., Wheeler, E., Soranzo, N., Park, J-H., Yang, J., Gudbjartsson, D. & 271 othersHeard-Costa, N. L., Randall, J. C., Qi, L., Smith, A. V., Maegi, R., Pastinen, T., Liang, L., Heid, I. M., Luan, J., Thorleifsson, G., Winkler, T. W., Goddard, M. E., Lo, K. S., Palmer, C., Workalemahu, T., Aulchenko, Y. S., Johansson, A., Zillikens, M. C., Feitosa, M. F., Esko, T., Johnson, T., Ketkar, S., Kraft, P., Mangino, M., Prokopenko, I., Absher, D., Albrecht, E., Ernst, F., Glazer, N. L., Hayward, C., Hottenga, J-J., Jacobs, K. B., Knowles, J. W., Kutalik, Z., Monda, K. L., Polasek, O., Preuss, M., Rayner, N. W., Robertson, N. R., Steinthorsdottir, V., Tyrer, J. P., Voight, B. F., Wiklund, F., Xu, J., Zhao, J. H., Nyholt, D. R., Pellikka, N., Perola, M., Perry, J. R. B., Surakka, I., Tammesoo, M-L., Altmaier, E. L., Amin, N., Aspelund, T., Bhangale, T., Boucher, G., Chasman, D. I., Chen, C., Coin, L., Cooper, M. N., Dixon, A. L., Gibson, Q., Grundberg, E., Hao, K., Junttila, M. J., Kaplan, L. M., Kettunen, J., Koenig, I. R., Kwan, T., Lawrence, R. W., Levinson, D. F., Lorentzon, M., McKnight, B., Morris, A. P., Mueller, M., Ngwa, J. S., Purcell, S., Rafelt, S., Salem, R. M., Salvi, E., Sanna, S., Shi, J., Sovio, U., Thompson, J. R., Turchin, M. C., Vandenput, L., Verlaan, D. J., Vitart, V., White, C. C., Ziegler, A., Almgren, P., Balmforth, A. J., Campbell, H., Citterio, L., De Grandi, A., Dominiczak, A., Duan, J., Elliott, P., Elosua, R., Eriksson, J. G., Freimer, N. B., Geus, E. J. C., Glorioso, N., Haiqing, S., Hartikainen, A-L., Havulinna, A. S., Hicks, A. A., Hui, J., Igl, W., Illig, T., Jula, A., Kajantie, E., Kilpelaeinen, T. O., Koiranen, M., Kolcic, I., Koskinen, S., Kovacs, P., Laitinen, J., Liu, J., Lokki, M-L., Marusic, A., Maschio, A., Meitinger, T., Mulas, A., Pare, G., Parker, A. N., Peden, J. F., Petersmann, A., Pichler, I., Pietiläinen, K. H., Pouta, A., Riddertrale, M., Rotter, J. I., Sambrook, J. G., Sanders, A. R., Schmidt, C. O., Sinisalo, J., Smit, J. H., Stringham, H. M., Walters, G. B., Widen, E., Wild, S. H., Willemsen, G., Zagato, L., Zgaga, L., Zitting, P., Alavere, H., Farrall, M., McArdle, W. L., Nelis, M., Peters, M. J., Ripatti, S., vVan Meurs, J. B. J., Aben, K. K., Ardlie, K. G., Beckmann, J. S., Beilby, J. P., Bergman, R. N., Bergmann, S., Collins, F. S., Cusi, D., den Heijer, M., Eiriksdottir, G., Gejman, P. V., Hall, A. S., Hamsten, A., Huikuri, H. V., Iribarren, C., Kahonen, M., Kaprio, J., Kathiresan, S., Kiemeney, L., Kocher, T., Launer, L. J., Lehtimaki, T., Melander, O., Mosley, T. H., Musk, A. W., Nieminen, M. S., O'Donnell, C. J., Ohlsson, C., Oostra, B., Palmer, L. J., Raitakari, O., Ridker, P. M., Rioux, J. D., Rissanen, A., Rivolta, C., Schunkert, H., Shuldiner, A. R., Siscovick, D. S., Stumvoll, M., Toenjes, A., Tuomilehto, J., van Ommen, G-J., Viikari, J., Heath, A. C., Martin, N. G., Montgomery, G. W., Province, M. A., Kayser, M., Arnold, A. M., Atwood, L. D., Boerwinkle, E., Chanock, S. J., Deloukas, P., Gieger, C., Gronberg, H., Hall, P., Hattersley, A. T., Hengstenberg, C., Hoffman, W., Lathrop, G. M., Salomaa, V., Schreiber, S., Uda, M., Waterworth, D., Wright, A. F., Assimes, T. L., Barroso, I., Hofman, A., Mohlke, K. L., Boomsma, D. I., Caulfield, M. J., Cupples, L. A., Erdmann, J., Fox, C. S., Gudnason, V., Gyllensten, U., Harris, T. B., Hayes, R. B., Jarvelin, M-R., Mooser, V., Munroe, P. B., Ouwehand, W. H., Penninx, B. W., Pramstaller, P. P., Quertermous, T., Rudan, I., Samani, N. J., Spector, T. D., Voelzke, H., Watkins, H., Wilson, J. F., Groop, L. C., Haritunians, T., Hu, F. B., Kaplan, R. C., Metspalu, A., North, K. E., Schlessinger, D., Wareham, N. J., Hunter, D. J., O'Connell, J. R., Strachan, D. P., Schadt, H. -E., Thorsteinsdottir, U., Peltonen, L., Uitterlinden, A. G., Visscher, P. M., Chatterjee, N., Loos, R. J. F., Boehnke, M., McCarthy, M. I., Ingelsson, E., Lindgren, C. M., Abecasis, G. R., Stefansson, K., Frayling, T. M., Hirschhorn, J. N. & Procardis Consortium, 2010, In : Nature. 467, 7317 , p. 832-838 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Implications of a Circulating Vaccine-Derived Poliovirus in Nigeria.

Jenkins, H. E., Aylward, R. B., Gasasira, A., Donnelly, C. A., Mwanza, M., Corander, J., Garnier, S., Chauvin, C., Abanida, E., Pate, M. A., Adu, F., Baba, M. & Grassly, N. C., 2010, In : New England Journal of Medicine. 362, p. 2360-2369 10 p.

Research output: Contribution to journalArticleScientificpeer-review

In defence of model-based inference in phylogeography REPLY

Beaumont, M. A., Nielsen, R., Robert, C., Hey, J., Gaggiotti, O., Knowles, L., Estoup, A., Panchal, M., Corander, J., Hickerson, M., Sisson, S. A., Fagundes, N., Chikhi, L., Beerli, P., Vitalis, R., Cornuet, J-M., Huelsenbeck, J., Foll, M., Yang, Z., Rousset, F. & 2 othersBalding, D. & Excoffier, L., 2010, In : Molecular Ecology. 19, p. 436-446 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Learning Genetic Population Structures Using Minimization of Stochastic Complexity

Corander, J., Gyllenberg, M. & Koski, T., 2010, In : Entropy. 12, 5, p. 1102-1124 23 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution

Heid, I. M., Jackson, A. U., Randall, J. C., Winkler, T. W., Qi, L., Steinthorsdottir, V., Thorleifsson, G., Zillikens, M. C., Speliotes, E. K., Maegi, R., Workalemahu, T., White, C. C., Bouatia-Naji, N., Harris, T. B., Berndt, S. I., Ingelsson, E., Willer, C. J., Weedon, M. N., Luan, J., Vedantam, S. & 31 othersEsko, T., Kilpelaeinen, T. O., Kutalik, Z., Li, S., Monda, K. L., Dixon, A. L., Holmes, C. C., Kaplan, L. M., Liang, L., Min, J. L., Moffatt, M. F., Molony, C., Ripatti, S., Surakka, I., Silander, K., Kettunen, J., Pellikka, N., Perola, M., Eriksson, J. G., Kajantie, E., Lokki, M-L., Pietiläinen, K. H., Sinisalo, J-P., Widen, E., Nieminen, M. S., Tuomi, T., Tuomilehto, J., Kaprio, J., Rissanen, A., Peltonen, L. & MAGIC, 2010, In : Nature Genetics. 42, 11, p. 949-960 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Metabonomic, transcriptomic, and genomic variation of a population cohort

Inouye, M., Kettunen, J., Soininen, P., Silander, K., Ripatti, S., Kumpula, L. S., Hämäläinen, E., Jousilahti, P., Kangas, A. J., Männistö, S., Savolainen, M. J., Jula, A., Leiviskä, J., Palotie, A., Salomaa, V., Perola, M., Ala-Korpela, M. & Peltonen, L., 2010, In : Molecular Systems Biology. 6, art.no 441

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

Monitekijäisten tautien genetiikka

Translated title of the contribution: Genetics of multifactorial diseasesKere, J., Ripatti, S. O. & Perola, M., 2010, In : Duodecim. 126, 19, p. 2305-2310

Research output: Contribution to journalArticleProfessional

Multilocus sequence types of Finnish bovine Campylobacter jejuni isolates and their attribution to human infections

de Haan, C. P. A., Kivistö, R. I., Hakkinen, M., Corander, J. & Hänninen, M-L., 2010, In : BMC Microbiology. 10, 9 p., 200.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk

Dupuis, J., Langenberg, C., Prokopenko, I., Saxena, R., Soranzo, N., Jackson, A. U., Wheeler, E., Glazer, N. L., Bouatia-Naji, N., Gloyn, A. L., Lindgren, C. M., Maegi, R., Morris, A. P., Randall, J., Johnson, T., Elliott, P., Rybin, D., Thorleifsson, G., Steinthorsdottir, V., Henneman, P. & 284 othersGrallert, H., Dehghan, A., Hottenga, J. J., Franklin, C. S., Navarro, P., Song, K., Goel, A., Perry, J. R. B., Egan, J. M., Lajunen, T., Grarup, N., Sparso, T., Doney, A., Voight, B. F., Stringham, H. M., Li, M., Kanoni, S., Shrader, P., Cavalcanti-Proenca, C., Kumari, M., Qi, L., Timpson, N. J., Gieger, C., Zabena, C., Rocheleau, G., Ingelsson, E., An, P., O'Connell, J., Luan, J., Elliott, A., McCarroll, S. A., Payne, F., Roccasecca, R. M., Pattou, F., Sethupathy, P., Ardlie, K., Ariyurek, Y., Balkau, B., Barter, P., Beilby, J. P., Ben-Shlomo, Y., Benediktsson, R., Bennett, A. J., Bergmann, S., Bochud, M., Boerwinkle, E., Bonnefond, A., Bonnycastle, L. L., Borch-Johnsen, K., Boettcher, Y., Brunner, E., Bumpstead, S. J., Charpentier, G., Chen, Y-D. I., Chines, P., Clarke, R., Coin, L. J. M., Cooper, M. N., Cornelis, M., Crawford, G., Crisponi, L., Day, I. N. M., de Geus, E. J. C., Delplanque, J., Dina, C., Erdos, M. R., Fedson, A. C., Fischer-Rosinsky, A., Forouhi, N. G., Fox, C. S., Frants, R., Franzosi, M. G., Galan, P., Goodarzi, M. O., Graessler, J., Groves, C. J., Grundy, S., Gwilliam, R., Gyllensten, U., Hadjadj, S., Hallmans, G., Hammond, N., Han, X., Hartikainen, A-L., Hassanali, N., Hayward, C., Heath, S. C., Hercberg, S., Herder, C., Hicks, A. A., Hillman, D. R., Hingorani, A. D., Hofman, A., Hui, J., Hung, J., Isomaa, B., Johnson, P. R. V., Jorgensen, T., Jula, A., Kaakinen, M., Kaprio, J., Kesaniemi, Y. A., Kivimäki, M., Knight, B., Koskinen, S., Kovacs, P., Kyvik, K. O., Lathrop, G. M., Lawlor, D. A., Le Bacquer, O., Lecoeur, C., Li, Y., Lyssenko, V., Mahley, R., Mangino, M., Manning, A. K., Martinez-Larrad, M. T., McAteer, J. B., McCulloch, L. J., McPherson, R., Meisinger, C., Melzer, D., Meyre, D., Mitchell, B. D., Morken, M. A., Mukherjee, S., Naitza, S., Narisu, N., Neville, M. J., Oostra, B. A., Orru, M., Pakyz, R., Palmer, C. N. A., Paolisso, G., Pattaro, C., Pearson, D., Peden, J. F., Pedersen, N. L., Perola, M., Pfeiffer, A. F. H., Pichler, I., Polasek, O., Posthuma, D., Potter, S. C., Pouta, A., Province, M. A., Psaty, B. M., Rathmann, W., Rayner, N. W., Rice, K., Ripatti, S., Rivadeneira, F., Roden, M., Rolandsson, O., Sandbaek, A., Sandhu, M., Sanna, S., Sayer, A. A., Scheet, P., Scott, L. J., Seedorf, U., Sharp, S. J., Shields, B., Sigurosson, G., Sijbrands, E. J. G., Silveira, A., Simpson, L., Singleton, A., Smith, N. L., Sovio, U., Swift, A., Syddall, H., Syvaenen, A-C., Tanaka, T., Thorand, B., Tichet, J., Toenjes, A., Tuomi, T., Uitterlinden, A. G., van Dijk, K. W., van Hoek, M., Varma, D., Visvikis-Siest, S., Vitart, V., Vogelzangs, N., Waeber, G., Wagner, P. J., Walley, A., Walters, G. B., Ward, K. L., Watkins, H., Weedon, M. N., Wild, S. H., Willemsen, G., Witteman, J. C. M., Yarnell, J. W. G., Zeggini, E., Zelenika, D., Zethelius, B., Zhai, G., Zhao, J. H., Zillikens, M. C., Borecki, I. B., Loos, R. J. F., Meneton, P., Magnusson, P. K. E., Nathan, D. M., Williams, G. H., Hattersley, A. T., Silander, K., Salomaa, V., Smith, G. D., Bornstein, S. R., Schwarz, P., Spranger, J., Karpe, F., Shuldiner, A. R., Cooper, C., Dedoussis, G. V., Serrano-Rios, M., Morris, A. D., Lind, L., Palmer, L. J., Hu, F. B., Franks, P. W., Ebrahim, S., Marmot, M., Kao, W. H. L., Pankow, J. S., Sampson, M. J., Kuusisto, J., Laakso, M., Hansen, T., Pedersen, O., Pramstaller, P. P., Wichmann, H. E., Illig, T., Rudan, I., Wright, A. F., Stumvoll, M., Campbell, H., Wilson, J. F., Hamsten, A., Bergman, R. N., Buchanan, T. A., Collins, F. S., Mohlke, K. L., Tuomilehto, J., Valle, T. T., Altshuler, D., Rotter, J. I., Siscovick, D. S., Penninx, B. W. J. H., Boomsma, D. I., Deloukas, P., Spector, T. D., Frayling, T. M., Ferrucci, L., Kong, A., Thorsteinsdottir, U., Stefansson, K., van Duijn, C. M., Aulchenko, Y. S., Cao, A., Scuteri, A., Schlessinger, D., Uda, M., Ruokonen, A., Jarvelin, M-R., Waterworth, D. M., Vollenweider, P., Peltonen, L., Mooser, V., Abecasis, G. R., Wareham, N. J., Sladek, R., Froguel, P., Watanabe, R. M., Meigs, J. B., Groop, L., Boehnke, M., McCarthy, M. I., Florez, J. C. & Ines Barroso MAGIC Investigators, Global BPgen Consortium, Procardis Consortium, GIANT Consortium, DIAGRAM Consortium, 2010, In : Nature Genetics. 42, 2, p. 105-116 12 p.

Research output: Contribution to journalArticleScientificpeer-review

NordicDB: a Nordic pool and portal for genome-wide control data

Leu, M., Humphreys, K., Surakka, I., Rehnberg, E., Muilu, J., Rosenstrom, P., Almgren, P., Jaaskelainen, J., Lifton, R. P., Kyvik, K. O., Kaprio, J., Pedersen, N. L., Palotie, A., Hall, P., Gronberg, H., Groop, L., Peltonen, L., Palmgren, J. & Ripatti, S., 2010, In : European Journal of Human Genetics. 18, p. 1322-1326 5 p.

Research output: Contribution to journalArticleScientificpeer-review

Sequence variants at CHRNB3-CHRNA6 and CYP2A6 affect smoking behavior

Thorgeirsson, T. E., Gudbjartsson, D. F., Surakka, I. L., Vink, J. M., Amin, N., Geller, F., Sulem, P., Rafnar, T., Esko, T., Walter, S., Gieger, C., Rawal, R., Mangino, M., Prokopenko, I., Maegi, R., Keskitalo, K., Gudjonsdottir, I. H., Gretarsdottir, S., Stefansson, H., Thompson, J. R. & 31 othersAulchenko, Y. S., Nelis, M., Aben, K. K., den Heijer, M., Dirksen, A., Ashraf, H., Soranzo, N., Valdes, A. M., Steves, C., Uitterlinden, A. G., Hofman, A., Toenjes, A., Kovacs, P., Hottenga, J. J., Willemsen, G., Vogelzangs, N., Doering, A., Dahmen, N., Nitz, B., Pergadia, M. L., Saez, B., De Diego, V., Lezcano, V., Garcia-Prats, M. D., Ripatti, S. O., Perola, M., Kettunen, J., Shen, H-Y., Kaprio, J., Palotie, L. & ENGAGE Consortium, 2010, In : Nature Genetics. 42, p. 448-453 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Statistical modelling of measurement errors in gas chromatographic analyses of blood alcohol content

Moroni, R., Paul, B., Wilhelm, L., Reinikainen, T., Sippola, E. & Corander, J., 2010, In : Forensic Science International. 202, 1-3, p. 71-74 4 p.

Research output: Contribution to journalArticleScientificpeer-review

Use of Genome-Wide Expression Data to Mine the "Gray Zone" of GWA Studies Leads to Novel Candidate Obesity Genes

Naukkarinen, J., Surakka, I., Pietiläinen, K. H., Rissanen, A., Salomaa, V., Ripatti, S., Yki-Järvinen, H., van Duijn, C. M., Wichmann, H. -E., Kaprio, J., Taskinen, M-R., Peltonen, L. & ENGAGE Consortium, 2010, In : PLoS Genetics. 6, 6, 10 p., e1000976.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
2009

A Naive Bayes classifier for protein function prediction

Kohonen, J., Talikota, S., Corander, J., Auvinen, P. & Arjas, E., 2009, In : In Silico Biology. 9, 1-2, p. 23-34 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Association of serum cotinine level with a cluster of three nicotinic acetylcholine receptor genes (CHRNA3/CHRNA5/CHRNB4) on chromosome 15

Keskitalo, K., Broms, U. H., Heliövaara, M., Ripatti, S. O., Surakka, I. L., Perola, M., Pitkäniemi, J. M., Peltonen, L., Aromaa, A. & Kaprio, J., 2009, In : Human Molecular Genetics. 18, 20, p. 4007-4012 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Association of variants in DISC1 with psychosis-related traits in a large population cohort

Tomppo, L., Hennah, W., Miettunen, J., Jarvelin, M-R., Veijola, J., Ripatti, S., Lahermo, P., Lichtermann, D., Peltonen, L. & Ekelund, J., 2009, In : Archives of General Psychiatry. 66, 2, p. 134-141 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Bayesian clustering and feature selection for cancer tissue samples

Marttinen, P., Myllykangas, S. & Corander, J., 2009, In : BMC Bioinformatics. 10, 18 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

Bayesian clustering of fuzzy feature vectors using a quasi-likelihood approach

Marttinen, P., Tang, J., De Baets, B., Dawyndt, P. & Corander, J., 2009, In : IEEE Transactions on Pattern Analysis and Machine Intelligence. 31, 1, p. 74-85 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Bayesian learning of graphical vector autoregressions with unequal lag-lengths

Marttinen, P. & Corander, J., 2009, In : Machine Learning. 75, p. 217-243 27 p.

Research output: Contribution to journalArticleScientificpeer-review

Bayesian quantitative trait locus mapping based on reconstruction of recent genetic histories

Gasbarra, D., Pirinen, M., Arjas, E. & Sillanpää, M. J., 2009, In : Genetics. 183, 2, p. 709-721 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Bayesian unsupervised classification framework based on stochastic partitions of data and a parallel search strategy

Corander, J., Gyllenberg, M. & Koski, T., 2009, In : Advances in Data Analysis and Classification. 3, p. 3-24 22 p.

Research output: Contribution to journalArticleScientificpeer-review

Bayesian unsupervised learning of DNA regulatory binding regions

Corander, J., Ekdahl, M. & Koski, T., 2009, In : Advances in Artificial Intelligence. 2009, p. Article ID 219743 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Estimating population haplotype frequencies from pooled SNP data using incomplete database information

Pirinen, M., 15 Dec 2009, In : Bioinformatics. 25, 24, p. 3296-3302 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis

Chasman, D. I., Pare, G., Mora, S., Hopewell, J. C., Peloso, G., Clarke, R., Cupples, L. A., Hamsten, A., Kathiresan, S., Maelarstig, A., Ordovas, J. M., Ripatti, S., Parker, A. N., Miletich, J. P. & Ridker, P. M., 2009, In : PLoS Genetics. 5, 11, p. e1000730 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Full Likelihood Analysis of Genetic Risk with Variable Age at Onset Disease-Combining Population-Based Registry Data and Demographic Information

Pitkäniemi, J., Varvio, S-L., Corander, J., Lehti, N., Partanen, J., Tuomilehto-Wolf, E., Tuomilehto, J., Thomas, A. & Arjas, E., 2009, In : PLoS One. 4, 8, p. e6836 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

GENESTAT: an information portal for design and analysis of genetic association studies

Ripatti, S., Becker, T., Bickeboeller, H., Dominicus, A., Fischer, C., Humphreys, K., Jonasdottir, G., Moreau, Y., Olsson, M., Ploner, A., Sheehan, N., Van Steen, K., Baur, M., van Duijn, C. & Palmgren, J., 2009, In : European Journal of Human Genetics. 17, p. 533-536 4 p.

Research output: Contribution to journalArticleScientificpeer-review

Genome-wide association analysis of metabolic traits in a birth cohort from a founder population

Sabatti, C., Service, S. K., Hartikainen, A-L., Pouta, A., Ripatti, S., Brodsky, J., Jones, C. G., Zaitlen, N. A., Varilo, T., Kaakinen, M., Sovio, U., Ruokonen, A., Laitinen, J., Jakkula, E., Coin, L., Hoggart, C., Collins, A., Turunen, H., Gabriel, S., Elliot, P. & 5 othersMcCarthy, M. I., Daly, M. J., Järvelin, M-R., Freimer, N. B. & Peltonen, L., 2009, In : Nature Genetics. 41, 1, p. 35-46 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Geographical structure and differential natural selection among North European populations

McEvoy, B. P., Montgomery, G. W., McRae, A. F., Ripatti, S., Perola, M., Spector, T. D., Cherkas, L., Ahmadi, K. R., Boomsma, D., Willemsen, G., Hottenga, J. J., Pedersen, N. L., Magnusson, P. K. E., Kyvik, K. O., Christensen, K., Kaprio, J., Heikkilä, K., Palotie, A., Widen, E., Muilu, J. & 7 othersSyvänen, A-C., Liljedahl, U., Hardiman, O., Cronin, S., Peltonen, L., Martin, N. G. & Visscher, P. M., 2009, In : Genome Research. 19, 5, p. 804-814 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Identifying currents in the gene pool for bacterial populations using an integrative approach

Tang, J., Hanage, W., Fraser, C. & Corander, J., 2009, In : PLoS Computational Biology. 5, 8, p. e1000455 18 p.

Research output: Contribution to journalArticleScientificpeer-review

Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts

Aulchenko, Y. S., Ripatti, S., Lindqvist, I., Boomsma, D., Heid, I. M., Pramstaller, P. P., Penninx, B. W. J. H., Janssens, A. C. J. W., Wilson, J. F., Spector, T., Martin, N. G., Pedersen, N. L., Kyvik, K. O., Kaprio, J., Hofman, A., Freimer, N. B., Järvelin, M-R., Gyllensten, U., Campbell, H., Rudan, I. & 38 othersJohansson, Å., Marroni, F., Hayward, C., Vitart, V., Jonasson, I., Pattaro, C., Wright, A., Hastie, N., Pichler, I., Hicks, A. A., Falchi, M., Willemsen, G., Hottenga, J-J., de Geus, E. J. C., Montgomery, G. W., Whitfield, J., Magnusson, P., Saharinen, J., Perola, M., Silander, K., Isaacs, A., Sijbrands, E. J. G., Uitterlinden, A. G., Witteman, J. C. M., Oostra, B. A., Elliott, P., Ruokonen, A., Sabatti, C., Gieger, C., Meitinger, T., Kronenberg, F., Döring, A., Wichmann, H. -E., Smit, J. H., McCarthy, M. I., van Duijn, C. M., Peltonen, L. & ENGAGE Consortium, 2009, In : Nature Genetics. 41, 1, p. 47-55 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Sequence analysis of percent G plus C fraction libraries of human faecal bacterial DNA reveals a high number of Actinobacteria

Krogius-Kurikka, L., Kassinen, A., Paulin, L., Corander, J., Mäkivuokko, H., Tuimala, J. & Palva, A., 2009, In : BMC Microbiology. 9, 68, 13 p.

Research output: Contribution to journalArticleScientificpeer-review

2008

A random change point model for assessing variability in repeated measures of cognitive function

Dominicus, A., Ripatti, S., Pedersen, N. L. & Palmgren, J., 2008, In : Statistics in Medicine. 27, p. 5786-5798 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Bayesian modeling of recombination events in bacterial populations

Marttinen, P., Baldwin, A., Hanage, W. P., Dowson, C., Mahenthiralingam, E. & Corander, J., 2008, In : BMC Bioinformatics. 9, 28 p.

Research output: Contribution to journalArticleScientificpeer-review

Bayesian spatial modelling of genetic population structure

Corander, J., Siren, J. & Arjas, E., 2008, In : Computational Statistics. 23, 1, p. 111-129 19 p.

Research output: Contribution to journalArticleScientificpeer-review

Conditional models accounting for regression to the mean in observational multi-wave panel studies on alcohol consumption

Ripatti, S. & Makela, P., 2008, In : Addiction Biology. 103, p. 24-31 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations

Corander, J., Marttinen, P., Siren, J. & Tang, J., 2008, In : BMC Bioinformatics. 9, 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Further evidence for the role of ENPP1 in obesity: association with morbid obesity in Finns

Valli-Jaakola, K. M., Suviolahti, E., Schalin-Jäntti, C., Ripatti, S. O., Silander, K., Oksanen, L., Salomaa, V., Peltonen, L. & Kontula, K., 2008, In : Obesity. 16, 9, p. 2113-2119 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Gender differences in genetic risk profiles for cardiovascular disease

Silander, K., Alanne, M., Kristiansson, K., Saarela, O., Ripatti, S., Auro, K., Karvanen, J., Kulathinal, S., Niemela, M., Ellonen, P., Vartiainen, E., Jousilahti, P., Saarela, J., Kuulasmaa, K., Evans, A., Perola, M., Salomaa, V. & Peltonen, L., 2008, In : PLoS One. 3, 10, p. e3615 15 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

Genetic spatial structure in a butterfly metapopulation correlates better with past than present demographic structure

Orsini, L., Corander, J., Alasentie, A. & Hanski, I., 2008, In : Molecular Ecology. 17, 11, p. 2629-2642 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Modelling Variability in Longitudinal Data Using Random Change Point Models

Dominicus, A., Ripatti, S. O., Pedersen, NL. & Palmgren, J., 2008, In : Statistics in Medicine. 2008/7, 27, p. 5786-98 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Parallell interacting MCMC for learning of topologies of graphical models

Corander, J., Ekdahl, M. & Koski, T., 2008, In : Data Mining and Knowledge Discovery. 17, 3, p. 431-456 26 p.

Research output: Contribution to journalArticleScientificpeer-review

The genome-wide patterns of variation expose significant substructure in a founder population

Jakkula, E., Rehnström, K., Varilo, T., Pietiläinen, O., Paunio, T., Pedersen, N., deFaire, U., Järvelin, M-R., Saharinen, J., Freimer, N., Ripatti, S., Purcell, S., Collins, A., Daly, M., Palotie, A. & Peltonen, L., 2008, In : American Journal of Human Genetics. 83, 12, p. 787-794 8 p.

Research output: Contribution to journalArticleScientificpeer-review

2007

A longitudinal Swedish study on screening for squamous cell carcinoma and adenocarcinoma: Evidence of effectiveness and overtreatment

Gunnell, A. S., Ylitalo, N., Sandin, S., Sparen, P., Adami, H. -O. & Ripatti, S., 2007, In : Cancer Epidemiology, Biomarkers & Prevention. 16, p. 2641-2648 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Bayesian analysis of population structure based on linked molecular information

Corander, J. & Tang, J., 2007, In : Mathematical Biosciences. 205, 1, p. 19-31 13 p.

Research output: Contribution to journalArticleScientificpeer-review

CYP2D6 worldwide genetic variation shows high frequency of altered activity variants and no continental structure

Sistonen, J., Sajantila, A., Lao, O., Corander, J., Barbujani, G. & Fuselli, S., 2007, In : Pharmacogenetics and Genomics. 17, 2, p. 93-101 9 p.

Research output: Contribution to journalArticleScientificpeer-review