Publications 2001 2020

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Association of variants in DISC1 with psychosis-related traits in a large population cohort

Tomppo, L., Hennah, W., Miettunen, J., Jarvelin, M-R., Veijola, J., Ripatti, S., Lahermo, P., Lichtermann, D., Peltonen, L. & Ekelund, J., 2009, In : Archives of General Psychiatry. 66, 2, p. 134-141 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Association of vitamin D status with arterial blood pressure and hypertension risk: a mendelian randomisation study

Vimaleswaran, K. S., Cavadino, A., Berry, D. J., Jorde, R., Dieffenbach, A. K., Lu, C., Alves, A. C., Heerspink, H. J. L., Tikkanen, E., Eriksson, J., Wong, A., Mangino, M., Jablonski, K. A., Nolte, I. M., Houston, D. K., Ahluwalia, T. S., van der Most, P. J., Pasko, D., Zgaga, L., Thiering, E. & 34 othersVitart, V., Fraser, R. M., Huffman, J. E., de Boer, R. A., Schoettker, B., Saum, K-U., McCarthy, M. I., Dupuis, J., Herzig, K-H., Sebert, S., Pouta, A., Laitinen, J., Kleber, M. E., Navis, G., Lorentzon, M., Jameson, K., Arden, N., Cooper, J. A., Acharya, J., Hardy, R., Raitakari, O., Ripatti, S., Billings, L. K., Lahti, J., Osmond, C., Penninx, B. W., Rejnmark, L., Lohman, K. K., Eriksson, J. G., Kivimaki, M., LifeLines Cohort Study Investigato, ICBP, CHARGE Consortium & Global Blood Pressure Genetics Gl, Sep 2014, In : The Lancet diabetes & endocrinology. 2, 9, p. 719-729 11 p.

Research output: Contribution to journalArticleScientificpeer-review

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Associations of Nicotine Intake Measures With CHRN Genes in Finnish Smokers

Keskitalo-Vuokko, K., Pitkaniemi, J., Broms, U., Heliovaara, M., Aromaa, A., Perola, M., Ripatti, S., Salminen, O., Salomaa, V., Loukola, A. & Kaprio, J., 2011, In : Nicotine & Tobacco Research. 13, 8, p. 686-690 5 p.

Research output: Contribution to journalArticleScientificpeer-review

Asymptotic Analysis of Rayleigh Product Channels: A Free Probability Approach

Zheng, Z., Wei, L., Speicher, R., Muller, R. R., Hämäläinen, J. & Corander, J., Mar 2017, In : IEEE Transactions on Information Theory. 63, 3, p. 1731-1745 15 p.

Research output: Contribution to journalArticleScientificpeer-review

A tribute to Mats Gyllenberg, on the occasion of his 60th birthday

Corander, J., Diekmann, O. & Koski, T., Mar 2016, In : Journal of mathematical biology. 72, 4, p. 793-795 3 p.

Research output: Contribution to journalArticleScientific

A unified approach to joint modeling of multiple quantitative and qualitative traits in gene mapping

Corander, J. & Sillanpää, M. J., 2002, In : Journal of Theoretical Biology. 218, 4, p. 435-446 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Bacmeta: simulator for genomic evolution in bacterial metapopulations

Sipola, A., Marttinen, P. & Corander, J., 1 Jul 2018, In : Bioinformatics. 34, 13, p. 2308-2310 3 p.

Research output: Contribution to journalArticleScientificpeer-review

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BAPS 2: enhanced possibilities for the analysis of genetic population structure

Corander, J., Waldmann, P., Marttinen, P. & Sillanpää, M. J., 2004, In : Bioinformatics. 20, 15, p. 2363-2369 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Baseline adjustment increases accurate interpretation of posturographic sway scores

Tietavainen, A., Corander, J. & Haeggstrom, E., Sep 2015, In : Gait & Posture. 42, 3, p. 285-288 4 p.

Research output: Contribution to journalArticleScientificpeer-review

Bayesian Adaptive Approach to Estimating Sample Sizes for Seizures of Illicit Drugs

Moroni, R., Aalberg, L., Reinikainen, T. & Corander, J., 2012, In : Journal of Forensic Sciences. 57, 1, p. 80-85 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Bayesian analysis of genetic differentiation between populations

Corander, J., Waldmann, P. & Sillanpää, M. J., 2003, In : Genetics. 163, p. 367-374 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Bayesian analysis of population structure based on linked molecular information

Corander, J. & Tang, J., 2007, In : Mathematical Biosciences. 205, 1, p. 19-31 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Bayesian assessment of dimensionality in reduced rank regression

Corander, J. & Villani, M., 2004, In : Statistica Neerlandica. 58, 3, p. 255-270 16 p.

Research output: Contribution to journalArticleScientificpeer-review

Bayesian association mapping for quantitative traits in a mixture of two populations

Sillanpää, M. J., Kilpikari, R., Ripatti, S., Onkamo, P. & Uimari, P., 2001, In : Genetic Epidemiology. 21, Suppl. 1, p. S692-S699

Research output: Contribution to journalArticleScientificpeer-review

Bayesian clustering and feature selection for cancer tissue samples

Marttinen, P., Myllykangas, S. & Corander, J., 2009, In : BMC Bioinformatics. 10, 18 p.

Research output: Contribution to journalArticleScientificpeer-review

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Bayesian clustering of DNA sequences using Markov chains and a stochastic partition model

Jääskinen, V., Parkkinen, V., Cheng, L. & Corander, J., Feb 2014, In : Statistical applications in genetics and molecular biology. 13, 1, p. 105-121 17 p.

Research output: Contribution to journalArticleScientificpeer-review

Bayesian clustering of fuzzy feature vectors using a quasi-likelihood approach

Marttinen, P., Tang, J., De Baets, B., Dawyndt, P. & Corander, J., 2009, In : IEEE Transactions on Pattern Analysis and Machine Intelligence. 31, 1, p. 74-85 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Bayesian estimation of bacterial community composition from 454 sequencing data

Cheng, L., Walker, A. W. & Corander, J., 2012, In : Nucleic Acids Research. 40, 12, p. 5240-5249 10 p.

Research output: Contribution to journalArticleScientificpeer-review

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Bayesian graphical model determination using decision theory

Corander, J., 2003, In : Journal of Multivariate Analysis. 85, 2, p. 253-266 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Bayesian identification of admixture events using multilocus molecular markers

Corander, J. & Marttinen, P., 2006, In : Molecular Ecology. 15, 10, p. 2833-2843 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Bayesian identification of bacterial strains from sequencing data

Sankar, A., Malone, B. M., Bayliss, S. C., Pascoe, B., Méric, G., Hitchings, M. D., Sheppard, S. K., Feil, E. J., Corander, J. I. & Honkela, A. J. H., 25 Aug 2016, In : Microbial Genomics. 2, 8, 9 p.

Research output: Contribution to journalArticleScientificpeer-review

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Bayesian inference of atomistic structure in functional materials

Todorovic, M., Gutmann, M. U., Corander, J. & Rinke, P., 18 Mar 2019, In : Npj computational materials. 5, 7 p., 35.

Research output: Contribution to journalArticleScientificpeer-review

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Bayesian Information Sharing Between Noise And Regression Models Improves Prediction of Weak Effects

Gillberg, J., Marttinen, P., Pirinen, M., Kangas, A. J., Soininen, P., Järvelin, M-R., Ala-Korpela, M. & Kaski, S., 16 Oct 2013, In : arXiv.org . 1310.4362v1 , 9 p.

Research output: Contribution to journalArticleScientific

Bayesian Latent Variable Collapsing Model for Detecting Rare Variant Interaction Effect in Twin Study

He, L., Sillanpaa, M. J., Ripatti, S. & Pitkaniemi, J., May 2014, In : Genetic Epidemiology. 38, 4, p. 310-324 15 p.

Research output: Contribution to journalArticleScientificpeer-review

Bayesian learning of graphical vector autoregressions with unequal lag-lengths

Marttinen, P. & Corander, J., 2009, In : Machine Learning. 75, p. 217-243 27 p.

Research output: Contribution to journalArticleScientificpeer-review

Bayesian meta-analysis across genome-wide association studies of diverse phenotypes

Trochet, H., Pirinen, M., Band, G., Jostins, L., McVean, G. & Spencer, C. C. A., Jul 2019, In : Genetic Epidemiology. 43, 5, p. 532-547 16 p.

Research output: Contribution to journalArticleScientificpeer-review

Bayesian model based spatiotemporal survey designs and partially observed log Gaussian Cox process

Liu, J. & Vanhatalo, J., 18 Oct 2019, In : Spatial statistics.

Research output: Contribution to journalArticleScientificpeer-review

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Bayesian modeling of recombination events in bacterial populations

Marttinen, P., Baldwin, A., Hanage, W. P., Dowson, C., Mahenthiralingam, E. & Corander, J., 2008, In : BMC Bioinformatics. 9, 28 p.

Research output: Contribution to journalArticleScientificpeer-review

Bayesian model learning based on a parallel MCMC strategy

Corander, J., Gyllenberg, M. & Koski, T., 2006, In : Statistics and Computing. 16, 4, p. 355-362 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Bayesian model learning based on predictive entropy

Corander, J. & Marttinen, P., 2006, In : Journal of Logic, Language and Information. 15, 1-2, p. 5-20 16 p.

Research output: Contribution to journalArticleScientificpeer-review

Bayesian Optimization for Likelihood-Free Inference of Simulator-Based Statistical Models

Gutmann, M. U. & Corander, J., Aug 2016, In : Journal of Machine Learning Research. 17, 47 p.

Research output: Contribution to journalArticleScientificpeer-review

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Bayesian predictive modeling and comparison of oil samples

Blomstedt, P., Gauriot, R., Viitala, N., Reinikainen, T. & Corander, J., Jan 2014, In : Journal of Chemometrics. 28, 1, p. 52-59 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Bayesian quantitative trait locus mapping based on reconstruction of recent genetic histories

Gasbarra, D., Pirinen, M., Arjas, E. & Sillanpää, M. J., 2009, In : Genetics. 183, 2, p. 709-721 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Bayesian refinement of association signals for 14 loci in 3 common diseases

Maller, J. B., McVean, G., Byrnes, J., Vukcevic, D., Palin, K., Su, Z., Howson, J. M. M., Auton, A., Myers, S., Morris, A., Pirinen, M., Brown, M. A., Burton, P. R., Caulfield, M. J., Compston, A., Farrall, M., Hall, A. S., Hattersley, A. T., Hill, A. V. S., Mathew, C. G. & 18 othersPembrey, M., Satsangi, J., Stratton, M. R., Worthington, J., Craddock, N., Hurles, M., Ouwehand, W., Parkes, M., Rahman, N., Duncanson, A., Todd, J. A., Kwiatkowski, D. P., Samani, N. J., Gough, S. C. L., McCarthy, M. I., Deloukas, P., Donnelly, P. & Wellcome Trust Case Control Consor, Dec 2012, In : Nature Genetics. 44, 12, p. 1294-1301 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Bayesian search of functionally divergent protein subgroups and their function specific residues

Marttinen, P., Corander, J., Törönen, P. & Holm, L., 2006, In : Bioinformatics. 22, 20, p. 2466-2474 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Bayesian semi-supervised classification of bacterial samples using MLST databases

Cheng, L., Connor, T. R., Aanensen, D. M., Spratt, B. G. & Corander, J., 2011, In : BMC Bioinformatics. 12, p. 302 10 p.

Research output: Contribution to journalArticleScientificpeer-review

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Bayesian spatial modelling of genetic population structure

Corander, J., Siren, J. & Arjas, E., 2008, In : Computational Statistics. 23, 1, p. 111-129 19 p.

Research output: Contribution to journalArticleScientificpeer-review

Bayesian spatial multispecies modelling to assess pelagic fish stocks from acoustic- and trawl-survey data

Juntunen, T., Vanhatalo, J., Peltonen, H. & Mäntyniemi, S., 2012, In : ICES Journal of Marine Science. 69, 1, p. 95-104

Research output: Contribution to journalArticleScientificpeer-review

Bayesian unsupervised classification framework based on stochastic partitions of data and a parallel search strategy

Corander, J., Gyllenberg, M. & Koski, T., 2009, In : Advances in Data Analysis and Classification. 3, p. 3-24 22 p.

Research output: Contribution to journalArticleScientificpeer-review

Bayesian unsupervised learning of DNA regulatory binding regions

Corander, J., Ekdahl, M. & Koski, T., 2009, In : Advances in Artificial Intelligence. 2009, p. Article ID 219743 11 p.

Research output: Contribution to journalArticleScientificpeer-review

biMM: efficient estimation of genetic variances and covariances for cohorts with high-dimensional phenotype measurements

Pirinen, M., Benner, C., Marttinen, P., Jarvelin, M-R., Rivas, M. A. & Ripatti, S., 1 Aug 2017, In : Bioinformatics. 33, 15, p. 2405-2407 3 p.

Research output: Contribution to journalArticleScientificpeer-review

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Biological, clinical and population relevance of 95 loci for blood lipids

Teslovich, T. M., Musunuru, K., Smith, A. V., Edmondson, A. C., Stylianou, I. M., Koseki, M., Pirruccello, J. P., Ripatti, S., Chasman, D. I., Willer, C. J., Johansen, C. T., Fouchier, S. W., Isaacs, A., Peloso, G. M., Barbalic, M., Ricketts, S. L., Bis, J. C., Aulchenko, Y. S., Thorleifsson, G., Feitosa, M. F. & 189 othersChambers, J., Orho-Melander, M., Melander, O., Johnson, T., Li, X., Guo, X., Li, M., Cho, Y. S., Go, M. J., Kim, Y. J., Lee, J-Y., Park, T., Kim, K., Sim, X., Ong, R. T-H., Croteau-Chonka, D. C., Lange, L. A., Smith, J. D., Song, K., Zhao, J. H., Yuan, X., Luan, J., Lamina, C., Ziegler, A., Zhang, W., Zee, R. Y. L., Wright, A. F., Witteman, J. C. M., Wilson, J. F., Willemsen, G., Wichmann, H. -E., Whitfield, J. B., Waterworth, D. M., Wareham, N. J., Waeber, G., Vollenweider, P., Voight, B. F., Vitart, V., Uitterlinden, A. G., Uda, M., Tuomilehto, J., Thompson, J. R., Tanaka, T., Surakka, I., Stringham, H. M., Spector, T. D., Soranzo, N., Smit, J. H., Sinisalo, J., Silander, K., Sijbrands, E. J. G., Scuteri, A., Scott, J., Schlessinger, D., Sanna, S., Salomaa, V., Saharinen, J., Sabatti, C., Ruokonen, A., Rudan, I., Rose, L. M., Roberts, R., Rieder, M., Psaty, B. M., Pramstaller, P. P., Pichler, I., Perola, M., Penninx, B. W. J. H., Pedersen, N. L., Pattaro, C., Parker, A. N., Pare, G., Oostra, B. A., O'Donnell, C. J., Nieminen, M. S., Nickerson, D. A., Montgomery, G. W., Meitinger, T., McPherson, R., McCarthy, M. I., McArdle, W., Masson, D., Martin, N. G., Marroni, F., Mangino, M., Magnusson, P. K. E., Lucas, G., Luben, R., Loos, R. J. F., Lokki, M-L., Lettre, G., Langenberg, C., Launer, L. J., Lakatta, E. G., Laaksonen, R., Kyvik, K. O., Kronenberg, F., Koenig, I. R., Khaw, K-T., Kaprio, J., Kaplan, L. M., Johansson, A., Jarvelin, M-R., Janssens, A. C. J. W., Ingelsson, E., Igi, W., Hovingh, G. K., Hottenga, J-J., Hofman, A., Hicks, A. A., Hengstenberg, C., Heid, I. M., Hayward, C., Havulinna, A. S., Hastie, N. D., Harris, T. B., Haritunians, T., Hall, A. S., Gyllensten, U., Guiducci, C., Groop, L. C., Gonzalez, E., Gieger, C., Freimer, N. B., Ferrucci, L., Erdmann, J., Elliott, P., Ejebe, K. G., Doering, A., Dominiczak, A. F., Demissie, S., Deloukas, P., de Geus, E. J. C., de Faire, U., Crawford, G., Collins, F. S., Chen, Y. I., Caulfield, M. J., Campbell, H., Burtt, N. P., Bonnycastle, L. L., Boomsma, D. I., Boekholdt, S. M., Bergman, R. N., Barroso, I., Bandinelli, S., Ballantyne, C. M., Assimes, T. L., Quertermous, T., Altshuler, D., Seielstad, M., Wong, T. Y., Tai, E-S., Feranil, A. B., Kuzawa, C. W., Adair, L. S., Taylor, H. A., Borecki, I. B., Gabriel, S. B., Wilson, J. G., Holm, H., Thorsteinsdottir, U., Gudnason, V., Krauss, R. M., Mohlke, K. L., Ordovas, J. M., Munroe, P. B., Kooner, J. S., Tall, A. R., Hegele, R. A., Kastelein, J. J. P., Schadt, E. E., Rotter, J. I., Boerwinkle, E., Strachan, D. P., Mooser, V., Stefansson, K., Reilly, M. P., Samani, N. J., Schunkert, H., Cupples, L. A., Sandhu, M. S., Ridker, P. M., Rader, D. J., van Duijn, C. M., Peltonen, L., Abecasis, G. R., Boehnke, M. & Kathiresan, S., 2010, In : Nature. 466, 7307, p. 707-713 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Biomarker Profiling by Nuclear Magnetic Resonance Spectroscopy for the Prediction of All-Cause Mortality: An Observational Study of 17,345 Persons

Fischer, K., Kettunen, J., Wurtz, P., Haller, T., Havulinna, A. S., Kangas, A. J., Soininen, P., Esko, T., Tammesoo, M-L., Maegi, R., Smit, S., Palotie, A., Ripatti, S., Salomaa, V., Ala-Korpela, M., Perola, M. & Metspalu, A., Feb 2014, In : PLoS Medicine. 11, 2, 12 p., 1001606.

Research output: Contribution to journalArticleScientificpeer-review

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Bioregions in marine environments: Combining Biological and Environmental Data for Management and Scientific Understanding

Woolley, S., Bax, N., Currie, J., Dunn, D., Hansen, C., Hill, N., O'Hara, T., Ovaskainen, O., Sayre, R., Vanhatalo, J. & Dunstan, P., 3 Oct 2019, (Accepted/In press) In : BioScience.

Research output: Contribution to journalArticleScientificpeer-review

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By-Catch of Grey Seals (Halichoerus grypus) in Baltic Fisheries-A Bayesian Analysis of Interview Survey

Vanhatalo, J., Vetemaa, M., Herrero, A., Aho, T. & Tiilikainen, R., 2014, In : PLoS One. 9, 11, 16 p., 113836.

Research output: Contribution to journalArticleScientificpeer-review

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Calibrating expert assessments using hierarchical Gaussian process models

Perälä, T., Vanhatalo, J. & Chrysafi, A., 2019, (Accepted/In press) In : Bayesian analysis.

Research output: Contribution to journalArticleScientificpeer-review

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Cell Specific eQTL Analysis without Sorting Cells

Westra, H-J., Arends, D., Esko, T., Peters, M. J., Schurmann, C., Schramm, K., Kettunen, J., Yaghootkar, H., Fairfax, B. P., Andiappan, A. K., Li, Y., Fu, J., Karjalainen, J., Platteel, M., Visschedijk, M., Weersma, R. K., Kasela, S., Milani, L., Tserel, L., Peterson, P. & 38 othersReinmaa, E., Hofman, A., Uitterlinden, A. G., Rivadeneira, F., Homuth, G., Petersmann, A., Lorbeer, R., Prokisch, H., Meitinger, T., Herder, C., Roden, M., Grallert, H., Ripatti, S., Perola, M., Wood, A. R., Melzer, D., Ferrucci, L., Singleton, A. B., Hernandez, D. G., Knight, J. C., Melchiotti, R., Lee, B., Poidinger, M., Zolezzi, F., Larbi, A., Wang, D. Y., van den Berg, L. H., Veldink, J. H., Rotzschke, O., Makino, S., Salomaa, V., Strauch, K., Voelker, U., van Meurs, J. B. J., Metspalu, A., Wijmenga, C., Jansen, R. C. & Franke, L., May 2015, In : PLoS Genetics. 11, 5, 17 p., 1005223.

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Childhood Adversities Are Associated with Shorter Telomere Length at Adult Age both in Individuals with an Anxiety Disorder and Controls

Kananen, L., Surakka, I., Pirkola, S., Suvisaari, J., Lönnqvist, J., Peltonen, L., Ripatti, S. & Hovatta, I., 2010, In : PLoS One. 5, 7 p.

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Chromosome X-Wide Association Study Identifies Loci for Fasting Insulin and Height and Evidence for Incomplete Dosage Compensation

Tukiainen, T., Pirinen, M., Sarin, A-P., Ladenvall, C., Kettunen, J., Lehtimaeki, T., Lokki, M-L., Perola, M., Sinisalo, J., Vlachopoulou, E., Eriksson, J. G., Groop, L., Jula, A., Jaervelin, M-R., Raitakari, O. T., Salomaa, V. & Ripatti, S., Feb 2014, In : PLoS Genetics. 10, 2, 12 p.

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Climate induces seasonality in pneumococcal transmission

Numminen, E., Chewapreecha, C., Turner, C., Goldblatt, D., Nosten, F., Bentley, S. D., Turner, P. & Corander, J., 12 Jun 2015, In : Scientific Reports. 5, 14 p., 11344.

Research output: Contribution to journalArticleScientificpeer-review

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