Combinatorial Pattern Matching research group / Esko Ukkonen

  • PL 68 (Gustaf Hällströmin katu 2b), D240b

    HELSINGIN YLIOPISTO

    Finland

International and National Collaboration Publications and projects within past five years.

Publications 2000 2017

  • 12 Conference contribution
  • 10 Article
  • 1 Doctoral Thesis

Accurate self-correction of errors in long reads using de Bruijn graphs

Salmela, L., Walve, R., Rivals, E. & Ukkonen, E., 15 Mar 2017, In : Bioinformatics. 33, 6, p. 799-806 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

Engineering a Lightweight External Memory Suffix Array Construction Algorithm

Kärkkäinen, J. T. & Kempa, D., 2017, In : Mathematics in Computer Science. 11, 2, p. 137-149 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Fast motif matching revisited: high-order PWMs, SNPs and indels

Korhonen, J. H., Palin, K., Taipale, J. & Ukkonen, E., 15 May 2017, In : Bioinformatics. 33, 4, p. 514-521 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access

LZ-End Parsing in Linear Time

Kempa, D. & Kosolobov, D., 2017, 25th Annual European Symposium on Algorithms (ESA 2017). Pruhs, K. & Sohler, C. (eds.). Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 14 p. 53. (Leibniz International Proceedings in Informatics (LIPIcs); vol. 87).

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Open Access
File

Seed-driven Learning of Position Probability Matrices from Large Sequence Sets

Toivonen, J., Taipale, J. & Ukkonen, E., 2017, 17th International Workshop on Algorithms in Bioinformatics (WABI 2017). Schwartz, R. & Reinert, K. (eds.). Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 13 p. 25. (Leibniz International Proceedings in Informatics (LIPIcs); vol. 88).

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Open Access
File

Activities 1991 2015

Committee member (opponent) of doctoral dissertation of Carl Barton (King's College London)

Esko Ukkonen (Opponent)
10 Feb 2015

Activity: Examination typesOpponent of doctoral dissertation

King's College London

Esko Ukkonen (Visiting researcher)
1 Feb 201512 Dec 2015

Activity: Visiting an external institution typesAcademic visit to other institution

Guest talk in King's College London

Esko Ukkonen (Speaker: Presenter)
2 Dec 2015

Activity: Participating in or organising an event typesPublic Talks

Invited talk in International Workshop "Algorithmics, Bioinformatics and Statistics for NGS data analysis"

Esko Ukkonen (Speaker: Keynote)
23 Jun 2015

Activity: Participating in or organising an event typesPublic Talks

Guest talk in Aalto University

Esko Ukkonen (Speaker: Presenter)
10 Jun 2014

Activity: Participating in or organising an event typesPublic Talks

Prizes

Award: Junior researcher of year 2014 (Department of Computer Science)

Dominik Kempa (Recipient), 2014

Prize: Prizes and awards

Award: Outstanding doctoral dissertation award 2016

Dominik Kempa (Recipient), 2016

Prize: Prizes and awards

Foreign Member of the Estonian Academy of Science

Esko Ukkonen (Recipient), 2 Dec 2015

Prize: Prizes and awards

Honorary Doctor of Aalto University

Esko Ukkonen (Recipient), 10 Oct 2014

Prize: Prizes and awards

Press / Media

Interview for Tieteen tietotekniikka (ICT for Science)

Esko Ukkonen

01/01/2009

1 media contribution

Press/Media: Press / Media

Interview for Perspektiivi

Esko Ukkonen

01/01/2008

1 media contribution

Press/Media: Press / Media