International and National Collaboration Publications and projects within past five years.

Projects

Publications

DALI and the persistence of protein shape

Holm, L., Jan 2020, In : Protein Science. 29, 1, p. 128-140 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access

Benchmarking fold detection by DaliLite v.5

Holm, L., 15 Dec 2019, In : Bioinformatics. 35, 24, p. 5326-5327 2 p.

Research output: Contribution to journalArticleScientificpeer-review

Novel comparison of evaluation metrics for gene ontology classifiers reveals drastic performance differences

Plyusnin, I., Holm, L. & Toronen, P., Nov 2019, In : PLoS Computational Biology. 15, 11, 27 p., 1007419.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

Zhou, N., Jiang, Y., Bergquist, T. R., Lee, A. J., Kacsoh, B. Z., Crocker, A. W., Lewis, K. A., Georghiou, G., Nguyen, H. N., Hamid, M. N., Davis, L., Dogan, T., Atalay, V., Rifaioglu, A. S., Dalkiran, A., Atalay, R. C., Zhang, C., Hurto, R. L., Freddolino, P. L., Zhang, Y. & 147 others, Bhat, P., Supek, F., Fernandez, J. M., Gemovic, B., Perovic, V. R., Davidovic, R. S., Sumonja, N., Veljkovic, N., Asgari, E., Mofrad, M. R. K., Profiti, G., Savojardo, C., Martelli, P. L., Casadio, R., Boecker, F., Schoof, H., Kahanda, I., Thurlby, N., McHardy, A. C., Renaux, A., Saidi, R., Gough, J., Freitas, A. A., Antczak, M., Fabris, F., Wass, M. N., Hou, J., Cheng, J., Wang, Z., Romero, A. E., Paccanaro, A., Yang, H., Goldberg, T., Zhao, C., Holm, L., Törönen, P., Medlar, A. J., Zosa, E., Borukhov, I., Novikov, I., Wilkins, A., Lichtarge, O., Chi, P-H., Tseng, W-C., Linial, M., Rose, P. W., Dessimoz, C., Vidulin, V., Dzeroski, S., Sillitoe, I., Das, S., Lees, J. G., Jones, D. T., Wan, C., Cozzetto, D., Fa, R., Torres, M., Vesztrocy, A. W., Rodriguez, J. M., Tress, M. L., Frasca, M., Notaro, M., Grossi, G., Petrini, A., Re, M., Valentini, G., Mesiti, M., Roche, D. B., Reeb, J., Ritchie, D. W., Aridhi, S., Alborzi, S. Z., Devignes, M-D., Koo, D. C. E., Bonneau, R., Gligorijevic, V., Barot, M., Fang, H., Toppo, S., Lavezzo, E., Falda, M., Berselli, M., Tosatto, S. C. E., Carraro, M., Piovesan, D., Rehman, H. U., Mao, Q., Zhang, S., Vucetic, S., Black, G. S., Jo, D., Suh, E., Dayton, J. B., Larsen, D. J., Omdahl, A. R., McGuffin, L. J., Brackenridge, D. A., Babbitt, P. C., Yunes, J. M., Fontana, P., Zhang, F., Zhu, S., You, R., Zhang, Z., Dai, S., Yao, S., Tian, W., Cao, R., Chandler, C., Amezola, M., Johnson, D., Chang, J-M., Liao, W-H., Liu, Y-W., Pascarelli, S., Frank, Y., Hoehndorf, R., Kulmanov, M., Boudellioua, I., Politano, G., Di Carlo, S., Benso, A., Hakala, K., Ginter, F., Mehryary, F., Kaewphan, S., Bjorne, J., Moen, H., Tolvanen, M. E. E., Salakoski, T., Kihara, D., Jain, A., Smuc, T., Altenhoff, A., Ben-Hur, A., Rost, B., Brenner, S. E., Orengo, C. A., Jeffery, C. J., Bosco, G., Hogan, D. A., Martin, M. J., O'Donovan, C., Mooney, S. D., Greene, C. S., Radivojac, P. & Friedberg, I., 19 Nov 2019, In : Genome Biology. 20, 1, 23 p., 244.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

Activities

  • 4 Membership or other role in national/international committee, council, board
  • 1 Public Talks
  • 1 Membership or other role in review committee
  • 1 Academic visit to other institution

International Society for Computational Biology 2017

Petri Törönen (Attendee)

21 Jul 201725 Jul 2017

Activity: Participating in or organising an event typesPublic Talks

Suomen Akatemia (External organisation)

Liisa Holm (Chair)

14 Oct 2011

Activity: Membership typesMembership or other role in national/international committee, council, board

Knut och Alice Wallenbergs stiftelse (External organisation)

Liisa Holm (Expert)

12 Dec 2011

Activity: Membership typesMembership or other role in national/international committee, council, board

Tieteellinen valtuuskunta (External organisation)

Liisa Holm (Member)

1 Jan 201130 Dec 2011

Activity: Membership typesMembership or other role in national/international committee, council, board

Science Foundation Ireland (External organisation)

Liisa Holm (Member)

16 Dec 2011

Activity: Membership typesMembership or other role in review committee