Department of Bacteriology and Immunology

  • Finland

Publications 1979 2019

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Review Article
2019

Bowel Biofilms: Tipping Points between a Healthy and Compromised Gut?

Tytgat, H. L. P., Nobrega, F. L., van der Oost, J. & de Vos, W. M., Jan 2019, In : Trends in Microbiology. 27, 1, p. 17-25 9 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Polymyxin Derivatives that Sensitize Gram-Negative Bacteria to Other Antibiotics

Vaara, M., 2 Jan 2019, In : Molecules. 24, 2, 15 p., 249.

Research output: Contribution to journalReview ArticleScientificpeer-review

Open Access
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Sisäsynnytintulehdus

Rantsi, T., Tuominen, M., Virtanen, S., Molander, P. & Paavonen, J., 2019, In : Duodecim. 135, 8, p. 719-726 8 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

2018

Early life colonization of the human gut: microbes matter everywhere

Korpela, K. & de Vos, W. M., Aug 2018, In : Current Opinion in Microbiology. 44, p. 70-78 9 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

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Emerging infections-an increasingly important topic: review by the Emerging Infections Task Force

Petersen, E., Petrosillo, N., Koopmans, M., ESCMID Emerging Infections Task Force Expert Panel. & Kantele, A., 2018, In : Clinical Microbiology and Infection. 24, 4, p. 369-375 7 p.

Research output: Contribution to journalReview ArticleScientific

Enterotypes in the landscape of gut microbial community composition

Costea, P. I., Hildebrand, F., Manimozhiyan, A., Backhed, F., Blaser, M. J., Bushman, F. D., de Vos, W. M., Ehrlich, S. D., Fraser, C. M., Hattori, M., Huttenhower, C., Jeffery, I. B., Knights, D., Lewis, J. D., Ley, R. E., Ochman, H., O'Toole, P. W., Quince, C., Relman, D. A., Shanahan, F. & 9 othersSunagawa, S., Wang, J., Weinstock, G. M., Wu, G. D., Zeller, G., Zhao, L., Raes, J., Knight, R. & Bork, P., Jan 2018, In : Nature Microbiology. 3, 1, 9 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Faagiterapian nykytilanne

Kiljunen, S. & Skurnik, M., 2018, In : Suomen sairaalahygienialehti. 36, 2, p. 60-63 4 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Open Access

Flux, Impact, and Fate of Halogenated Xenobiotic Compounds in the Gut

Atashgahi, S., Shetty, S. A., Smidt, H. & de Vos, W. M., 10 Jul 2018, In : Frontiers in Physiology. 9, 18 p., 888.

Research output: Contribution to journalReview ArticleScientificpeer-review

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Fusobacterium necrophorum ja Lemierren oireyhtymä: Nuorten aikuisten septinen laskimotulehdus

Nuikka, A., Jarva, H. & Meri, S., 2018, In : Duodecim. 134, 16, p. 1585-1591 7 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

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Immunological and toxicological effects of bad indoor air to cause Dampness and Mold Hypersensitivity Syndrome

Tuuminen, T. & Lohi, J., 2018, In : AIMS allergy and immunology. 2, 4, p. 190-203 14 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

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Inflammatory changes in the aneurysm wall: a review

Tulamo, R., Frösen, J., Hernesniemi, J. & Niemelä, M., Jul 2018, In : Journal of Neurointerventional Surgery. 10, Suppl 1, p. I58-+ 12 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Lääketieteellinen päätöksenteko ja sitä kuormittavat tekijät

Hetemäki, I., 2018, In : Duodecim. 134, 24, p. 2461-2466 6 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Malariarokote markkinoilla - onko ongelma ratkaistu?

Koponen, K. & Meri, S., 2018, In : Duodecim. 134, 24, p. 2454-2460 7 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Mikrobilääkkeille resistentit bakteerit yleistyvät

Sihvonen, R., Holma, T. & Pätäri-Sampo, A., 2018, In : Duodecim. 134, 15, p. 1467-1475 9 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Open Access
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Mouse models for human intestinal microbiota research: a critical evaluation

Hugenholtz, F. & de Vos, W. M., Jan 2018, In : Cellular and Molecular Life Sciences. 75, 1, p. 149-160 12 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

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New polymyxin derivatives that display improved efficacy in animal infection models as compared to polymyxin B and colistin

Vaara, M., Sep 2018, In : Medicinal Research Reviews. 38, 5, p. 1661-1673 13 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Selected aspects of the human gut microbiota

Ventura, M., O'Toole, P. W., de Vos, W. M. & van Sinderen, D., Jan 2018, In : Cellular and Molecular Life Sciences. 75, 1, p. 81-82 2 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Open Access
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2017

Akkermansia muciniphila and its role in regulating host functions

Derrien, M., Belzer, C. & de Vos, W. M., May 2017, In : Microbial Pathogenesis. 106, p. 171-181 11 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

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A minireview on the in vitro and in vivo experiments with anti-Escherichia coli O157: H7 phages as potential biocontrol and phage therapy agents

Sabouri, S., Sepehrizadeh, Z., Amirpour-Rostami, S. & Skurnik, M., 21 Feb 2017, In : International Journal of Food Microbiology. 243, p. 52-57 6 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

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History of Taenia saginata Tapeworms in Northern Russia

Konyaev, S. V., Nakao, M., Ito, A. & Lavikainen, A., Dec 2017, In : Emerging Infectious Diseases. 23, 12, p. 2030-2037 8 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Open Access

Holistic view on health: two protective layers of biodiversity

Ruokolainen, L., Lehtimaki, J., Karkman, A., Haahtela, T., von Hertzen, L. & Fyhrquist, N., Apr 2017, In : Annales Zoologici Fennici. 54, 1-4, p. 39-49 11 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

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Intestinal microbiome landscaping: insight in community assemblage and implications for microbial modulation strategies

Shetty, S. A., Hugenholtz, F., Lahti, L., Smidt, H. & de Vos, W. M., Mar 2017, In : FEMS Microbiology Reviews. 41, 2, p. 182-199 18 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

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Kohtauksittainen yöllinen hemoglobiinivirtsaisuus (PNH)

Korkama, E-S., Jarva, H., Lehto, M., Pelliniemi, T-T., Poikonen, E., Salonen, J., Sinisalo, M., Säily, M., Meri, S. & Armstrong, E., 2017, In : Duodecim. 133, 22, p. 2151-2160 10 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

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More than just a gut feeling: constraint-based genome-scale metabolic models for predicting functions of human intestinal microbes

van der Ark, K. C. H., van Heck, R. G. A., Dos Santos, V. A. P. M., Belzer, C. & de Vos, W. M., 14 Jul 2017, In : Microbiome. 5, 13 p., 78.

Research output: Contribution to journalReview ArticleScientificpeer-review

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Next-Generation Beneficial Microbes: The Case of Akkermansia muciniphila

Cani, P. D. & de Vos, W. M., 22 Sep 2017, In : Frontiers in Microbiology. 8, 8 p., 1765.

Research output: Contribution to journalReview ArticleScientificpeer-review

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Nivelreuma

Rantalaiho, V., Sokka, T. & Meri, S., 2017, In : Duodecim. 133, 18, p. 1691-1698 8 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

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The First Microbial Colonizers of the Human Gut: Composition, Activities, and Health Implications of the Infant Gut Microbiota

Milani, C., Duranti, S., Bottacini, F., Casey, E., Turroni, F., Mahony, J., Belzer, C., Delgado Palacio, S., Arboleya Montes, S., Mancabelli, L., Lugli, G. A., Miguel Rodriguez, J., Bode, L., de Vos, W., Gueimonde, M., Margolles, A., van Sinderen, D. & Ventura, M., Dec 2017, In : Microbiology and Molecular Biology Reviews. 81, 4, 67 p., ARTN e00036-17.

Research output: Contribution to journalReview ArticleScientificpeer-review

Open Access

Travel-acquired ESBL-producing Enterobacteriaceae: impact of colonization at individual and community level

Woerther, P-L., Andremont, A. & Kantele, A., Apr 2017, In : Journal of Travel Medicine. 24, p. S29-S34 6 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Open Access
2016

Bakteriofagihoidon mahdollisuudet

Skurnik, M. & Kiljunen, S., 2016, In : Duodecim. 132, 8, p. 712-719 8 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

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Campylobacteriosis: the role of poultry meat

Skarp, C. P. A., Hanninen, M-L. & Rautelin, H. I., Feb 2016, In : Clinical Microbiology and Infection. 22, 2, p. 103-109 7 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

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Harnessing the power of microbial autotrophy

Claassens, N. J., Sousa, D. Z., dos Santos, V. A. P. M., de Vos, W. M. & van der Oost, J., Nov 2016, In : Nature Reviews, Microbiology. 14, 11, p. 692-706 15 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Open Access

Lactobacillus plantarum WCFS1 and its host interaction: a dozen years after the genome

van den Nieuwboer, M., van Hemert, S., Claassen, E. & de Vos, W. M., Jul 2016, In : Microbial Biotechnology. 9, 4, p. 452-465 14 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

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Mitä biologisten lääkkeiden nimet kertovat?

Jokiranta, S., 2016, In : Duodecim. 132, 4, p. 343-346 4 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Pentraxins in the activation and regulation of innate immunity

Daigo, K., Inforzato, A., Barajon, I., Garlanda, C., Bottazzi, B., Meri, S. & Mantovani, A., Nov 2016, In : Immunological Reviews. 274, 1, p. 202-217 16 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

SALSA: A Regulator of the early Steps of Complement Activation on Mucosal Surfaces

Reichhardt, M. P. & Meri, S., 8 Mar 2016, In : Frontiers in Immunology. 7, 7 p., 85.

Research output: Contribution to journalReview ArticleScientificpeer-review

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Self-nonself discrimination by the complement system

Meri, S., Aug 2016, In : FEBS Letters. 590, 15, p. 2418-2434 17 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Open Access

Sucar Coating the Envelope: Glycoconjucates for Microbe-Host Crosstalk

Tytgat, H. L. P. & de Vos, W. M., Nov 2016, In : Trends in Microbiology. 24, 11, p. 853-861 9 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

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Sytokiinien rooli ja salpaus immuunivälitteisissä tulehdussairauksissa

Matikainen, S., Jokiranta, S. & Eklund, K. K., 2016, In : Duodecim. 132, 4, p. 349-354 6 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

The rich and the poor: environmental biodiversity protecting from allergy

Ruokolainen, L., Fyhrquist, N. & Haahtela, T., 2016, In : Current opinion in allergy and clinical immunology.. 16, 5, p. 421–426 6 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Toisintokuume: Infektio, joka tulee huomioida maahantulijan kuumetaudin erotusdiagnostiikassa

Hytönen, J., Khawaja, T., Grönroos, J. O., Jalava, A., Meri, S. & Oksi, J., 2016, In : Duodecim. 132, 21, p. 1952-1956 5 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

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Yersinia adhesins: An arsenal for infection

Chauhan, N., Wrobel, A., Skurnik, M. & Leo, J. C., Oct 2016, In : Proteomics. Clinical applications. 10, 9-10, p. 949-963 15 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Zikavirus

Huhtamo, E., Jääskeläinen, A. J., Sane, J., Nohynek, H. & Vapalahti, O., 2016, In : Duodecim. 132, 17, p. 1521-1528 8 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

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2015

Application of the Human Intestinal Tract Chip to the non-human primate gut microbiota

Gonzalez, T. D. J. B., van Passel, M. W. J., Tims, S., Fuentes, S., De Vos, W. M., Smidt, H. & Belzer, C., 2015, In : Beneficial Microbes. 6, 3, p. 271-276 6 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Complement system in dermatological diseases - fire under the skin

Panelius, J. & Meri, S., 2015, In : Frontiers in Immunology. 2, 10 p., 3.

Research output: Contribution to journalReview ArticleScientificpeer-review

Fecal microbiota transplantation as novel therapy in gastroenterology: A systematic review

Rossen, N. G., MacDonald, J. K., de Vries, E. M., D'Haens, G. R., de Vos, W. M., Zoetendal, E. G. & Ponsioen, C. Y., 7 May 2015, In : World Journal of Gastroenterology. 21, 17, p. 5359-5371 13 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Open Access
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Helsinki alert of biodiversity and health

von Hertzen, L., Beutler, B., Bienenstock, J., Blaser, M., Cani, P. D., Eriksson, J., Farkkila, M., Haahtela, T., Hanski, I., Jenmalm, M. C., Kere, J., Knip, M., Kontula, K., Koskenvuo, M., Ling, C., Mandrup-Poulsen, T., von Mutius, E., Makela, M. J., Paunio, T., Pershagen, G. & 6 othersRenz, H., Rook, G., Saarela, M., Vaarala, O., Veldhoen, M. & de Vos, W. M., May 2015, In : Annals of Medicine. 47, 3, p. 218-225 8 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Human Microbiome: When a Friend Becomes an Enemy

Muszer, M., Noszczynska, M., Kasperkiewicz, K. & Skurnik, M., Aug 2015, In : Archivum immunologiae et therapiae experimentalis. 63, 4, p. 287-298 12 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Open Access
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Hunt for the origin of allergy - comparing the Finnish and Russian Karelia.

Haahtela, T., Laatikainen, T., Alenius, H., Auvinen, P., Fyhrquist, N., Hanski, I., von Hertzen, L., Jousilahti, P., Kosunen, T. U., Markelova, O., Mäkelä, M. J., Pantelejev, V., Uhanov, M., Zilber, E. & Vartiainen, E., May 2015, In : Clinical and Experimental Allergy. 45, 5, p. 891-901 11 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

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Immunologins grunder

Arstila, P., 2015, In : Finska Läkaresällskapets Handlingar. 175, 2, p. 7-10 4 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Intestinal Microbiota And Diet in IBS: Causes, Consequences, or Epiphenomena?

Rajilic-Stojanovic, M., Jonkers, D. M., Salonen, A., Hanevik, K., Raes, J., Jalanka, J., de Vos, W. M., Manichanh, C., Golic, N., Enck, P., Philippou, E., Iraqi, F. A., Clarke, G., Spiller, R. C. & Penders, J., Feb 2015, In : American Journal of Gastroenterology. 110, 2, p. 278-287 10 p.

Research output: Contribution to journalReview ArticleScientificpeer-review