Department of Biochemistry and Developmental Biology

  • Finland

Publications 1980 2019

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2006

KSHV viral cyclin inactivates p27KIP1 through Ser10 and Thr187 phosphorylation in proliferating primary effusion lymphomas

Sarek, G., Järviluoma, A. & Ojala, P., 2006, In : Blood. 107, 2, p. 725-732 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Lipid headgroup superlattice modulates the activity of surface-acting cholesterol oxidase in ternary phospholipid/cholesterol bilayers

Cheng, K. H., Cannon, B., Metze, J., Lewis, A., Huang, J., Vaughn, M., Zhu, Q., Somerharju, P. & Virtanen, J., 2006, In : Biochemistry. 45, p. 10855-10864 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Locating potential enhancer elements by comparative genomics using the EEL software

Palin, K., Taipale, J. & Ukkonen, E., 2006, In : Nature Protocols. 1, 1, p. 368-374 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Mutational analysis and membrane-interactions of the [beta]-sheet-like N-terminal domain of the pediocin-like antimicrobial peptide sakacin P

Fimland, G., Pirneskoski, J., Kaewsrichan, J., Jutila, A., Kristiansen, P. E., Kinnunen, P. & Nissen-Meyer, J., 2006, In : Biochimica et Biophysica Acta. Proteins and Proteomics. 1764, p. 1132-1140 9 p.

Research output: Contribution to journalArticleScientificpeer-review

PDGF regulates the actin cytoskeleton through hnRNP-K-mediated activation of the ubiquitin E-3-ligase MIR

Nagano, K., Bornhauser, B. C., Warnasuriya, G., Entwistle, A., Cramer, R., Lindholm, D. & Naaby-Hansen, S., 2006, In : EMBO Journal. 25, p. 1871-1882 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Phosphorylation of the cyclin-dependent kinase inhibitor p21Cip1 on serine 130 is essential for viral cyclin-mediated bypass of a p21Cip1-imposed G1 arrest

Järviluoma, A., Child, E., Sarek, G., Sirimongkolkasem, P., Peters, G., Ojala, P. & Mann, D., 2006, In : Molecular and Cellular Biology. 26, 6, p. 2430-2440 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Properties of the permeability transition in VDAC1(-/-) mitochondria

Krauskopf, A., Eriksson, O., Craigen, W., Forte, M. & Bernardi, P., 2006, In : Biochimica et Biophysica Acta. Bioenergetics. 1757, p. 590-595 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Properties of the permeability transition in VDAC1(-/-) mitochondria.

Eriksson-Rosenberg, O., Krauskopf, A., Craigen, W. J., Forte, M. A. & Bernardi, P., May 2006, In : Biochimica et Biophysica Acta. Proteins and Proteomics. 1757, p. 590-595

Research output: Contribution to journalArticleScientificpeer-review

The mammalian serine protease LACTB is located in the mitochondrial intermembrane compartment

Polianskyte, Z., Peitsaro, N. & Eriksson, O., 2006, In : FASEB Journal. 20, p. A495-A495 1 p.

Research output: Contribution to journalArticleScientificpeer-review

XIAP decreases caspase-12 cleavage and calpain activity in spinal cord of ALS transgenic mice

Wootz, H., Hansson, I., Korhonen, L. & Lindholm, D., 2006, In : Experimental Cell Research. 312, p. 1890-1898 9 p.

Research output: Contribution to journalArticleScientificpeer-review

2005

19-Nortestosterone influences neural stem cell proliferation and neurogenesis in the rat brain

Brannvall, K., Bogdanovic, N., Korhonen, L. & Lindholm, D., 2005, In : European Journal of Neuroscience. 21, p. 871-878 8 p.

Research output: Contribution to journalArticleScientificpeer-review

ANION TRANSPORTERS SLC26A6 AND SLC26A7 HAVE SPECIFIC EXPRESSION IN JUXTAGLOMERULAR APPARATUS OF HUMAN KIDNEY

Kujala, M., Tienari, J., Lohi, H., Sariola, H., Lehtonen, E. & Kere, J., Jun 2005, In : Nephrology. 10, p. A240-A241 2 p.

Research output: Contribution to journalArticleScientificpeer-review

Automated quantitative analysis of complex lipidomes by liquid chromatography/mass spectrometry

Hermansson, M., Uphoff, A., Käkelä, R. & Somerharju, P., 2005, In : Analytical Chemistry. 77, p. 2166-2175 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Binding of endostatin to phosphatidylserine-containing membranes and formation of amyloid-like fibers

Zhao, H., Jutila, A., Nurminen, T., Wickström, S. A., Keski-Oja, J. & Kinnunen, P., 2005, In : Biochemistry. 44, p. 2857-2863 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Bruce/apollon promotes hippocampal neuron survival and is downregulated by kainic acid

Sokka, A. L., Mudo, G., Aaltonen, J., Belluardo, N., Lindholm, D. & Korhonen, L., 2005, In : Biochemical and Biophysical Research Communications. 338, p. 729-735 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Cathepsin D-deficient Drosophila recapitulate the key features of neuronal ceroid lipofuscinoses

Myllykangas, L., Tyynelä, J., Page-McCaw, A., Rubin, G. M., Haltia, M. & Feany, M. B., 2005, In : Neurobiology of Disease. 19, 1/2, p. 194-199 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Characterization of the NF2 protein merlin and the ERM protein ezrin in human, rat, and mouse central nervous system

Grönholm, M., Teesalu, T., Tyynelä, J., Piltti, K., Böhling, T., Wartiovaara, K., Vaheri, A. & Carpén, O., 2005, In : Molecular and Cellular Neuroscience. 28, p. 683-693 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Crosstalk between Jagged1 and GDNF/Ret/GFR[alpha]1 signalling regulates ureteric budding and branching

Kuure, S., Sainio, K., Vuolteenaho, R., Ilves, M., Wartiovaara, K., Immonen, T., Kvist, J., Vainio, S. & Sariola, H., 2005, In : Mechanisms of Development. 122, p. 765-780 16 p.

Research output: Contribution to journalArticleScientificpeer-review

Defective insulin receptor activation and altered lipid rafts in Niemann-Pick type C disease hepatocytes

Vainio, S., Bykov, I., Hermansson, M., Jokitalo, E., Somerharju, P. & Ikonen, E., 2005, In : Biochemical Journal. 391, p. 465-472 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Downregulation of the HERG (KCNH2) K+ channel by ceramide: evidence for ubiquitin-mediated lysosomal degradation

Chapman, H., Korhonen, L., Ramstrom, C., Laine, M., Wann, K. T., Lindholm, D., Pasternack, M. & Tornquist, K., 2005, In : Journal of Cell Science. 118, p. 5325-5334 10 p.

Research output: Contribution to journalArticleScientificpeer-review

How does nitrous oxide reductase interact with its electron donors? a docking study

Mattila, K. & Haltia, T., 2005, In : Proteins : structure, function, and genetics. 59 (, p. 708-722 15 p.

Research output: Contribution to journalArticleScientificpeer-review

Modification of permeability transition pore arginine(s) by phenylglyoxal derivatives in isolated mitochondria and mammalian cells: Structure-function relationship of arginine ligands

Johans, M., Milanesi, E., Franck, M., Johans, C., Liobikas, J., Panagiotaki, M., Greci, L., Principato, G., Kinnunen, P., Bernardi, P., Costantini, P. & Eriksson, O., 2005, In : Journal of Biological Chemistry. 280, 13, p. 12130-12136 7 p.

Research output: Contribution to journalArticleScientificpeer-review

MSAP enhances migration of C6 glioma cells through phosphorylation of the myosin regulatory light chain

Bornhauser, B. C. & Lindholm, D., 2005, In : Cellular and Molecular Life Sciences. 62, p. 1260-1266 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Observation of the main phase transition of dinervonoylphosphocholine giant liposomes by fluorescence microscopy

Metso, A. J., Zhao, H., Tuunainen, I., Kinnunen, P., Metso, A. & Zhao, H., 2005, In : Biochimica et Biophysica Acta. Biomembranes. 1713, p. 83-91 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Overexpression of OSBP-related protein 2 (ORP2) in CHO cells induces alterations of phospholipid species composition

Käkelä, R., Tanhuanpää, K., Laitinen, S., Somerharju, P. & Olkkonen, V., 2005, In : Biochemistry and Cell Biology. 83, p. 677-683 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Regeneration of human auditory nerve. In vitro/in video demonstration of neural progenitor cells in adult human and guinea pig spiral ganglion

Rask-Andersen, H., Bostrom, M., Gerdin, B., Kinnefors, A., Nyberg, G., Engstrand, T., Miller, J. M. & Lindholm, D., 2005, In : Hearing Research. 203, p. 180-191 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Role of Emx2 in early urogenital development

Hytonen, M., Moshnyakov, M., Sariola, H. & Sainio, K., 2005, In : Mechanisms of Development. 122, p. S63-S63 1 p.

Research output: Contribution to journalArticleScientific

The expression of plexins during mouse embryogenesis

Perälä, N., Immonen, T. & Sariola, H., 2005, In : Gene expression patterns. 5, p. 355-362 8 p.

Research output: Contribution to journalArticleScientificpeer-review

2004

Activator protein-1 in human male germ cell apoptosis

Suomalainen, L., Dunkel, L., Ketola, I., Eriksson, M., Erkkilä, K., Oksjoki, R., Taari, K., Heikinheimo, M. & Pentikäinen, V., 2004, In : Molecular Human Reproduction. 10, 10, p. 743–753 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Biological effects of the dual phenotypic Janus mutation of ret cosegregating with both multiple endocrine neoplasia type 2 and Hirschsprung's disease

Arighi, E., Popsueva, A., Degl'Innocenti, D., Borrello, M. G., Carniti, C., Perälä, N., Pierotti, M. A. & Sariola, H., 2004, In : Molecular Endocrinology. 18, p. 1004-1017 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Detection and differentiation of human parvovirus variants by commercial quantitative real-time PCR tests

Hokynar, K. C., Norja, P. H., Laitinen, H., Palomäki, P., Garbarg-Chenon, A., Ranki, A., Hedman, K. & Söderlund-Venermo, M., 2004, In : Journal of Clinical Microbiology. 42, p. 2013-2019 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Genoprevalence in human tissues of TT-virus genotype 6

Kakkola, L., Kaipio, N., Hokynar, K., Puolakkainen, P., Mattila, P. S., Kokkola, A., Partio, E. K., Eis-Hubinger, A. M., Soderlund-Venermo, M. & Hedman, K., 2004, In : Archives of Virology. Supplementum. 149, p. 1095-1106 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Helicobacter pylori infection activates FOS and stress-response genes and alters expression of genes in gastric cancer-specific loci

Myllykangas, S., Monni, O., Nagy, B., Rautelin, H. & Knuutila, S., Aug 2004, In : Genes, Chromosomes & Cancer. 40, 4, p. 334-341 8 p.

Research output: Contribution to journalArticleScientificpeer-review

High-resolution genomic and expression profiling reveals 105 putative amplification target genes in pancreatic cancer

Mahlamaki, E. H., Kauraniemi, P., Monni, O., Wolf, M., Hautaniemi, S. & Kallioniemi, A., 2004, In : NeoPlasia. 6, p. 432-439 8 p.

Research output: Contribution to journalArticleScientificpeer-review

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Immunoneutralization of Growth Differentiation Factor 9 Reveals It Partially Accounts for Mouse Oocyte Mitogenic Activity

Gilchrist, R. B., Ritter, L. J., Cranfield, M., Jeffery, L. A., Amato, F., Scott, S. J., Myllymaa, S., Kaivo-Oja, N., Lankinen, H., Mottershead, D. G., Groome, N. P. & Ritvos, O., Sep 2004, In : Biology of Reproduction. 71, 3, p. 732-739 8 p.

Research output: Contribution to journalArticleScientificpeer-review

KSHV viral cyclin binds to p27KIP1 in primary effusion lymphomas

Jarviluoma, A., Koopal, S., Rasanen, S., Makela, T. P. & Ojala, P. M., 2004, In : Blood. 104, p. 3349-3354 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Neurochemical and behavioural changes in zebrafish Danio rerio after systemic administration of 6-hydroxydopamine and 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine

Anichtchik, O. V., Kaslin, J., Peitsaro, N., Scheinin, M. & Panula, P., 2004, In : Journal of Neurochemistry. 88, p. 443-453 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Nonsense-mediated decay microarray analysis identifies mutations of EPHB2 in human prostate cancer

Huusko, P., Ponciano-Jackson, D., Wolf, M., Kiefer, J. A., Azorsa, D. O., Tuzmen, S., Weaver, D., Robbins, C., Moses, T., Allinen, M., Hautaniemi, S., Chen, Y. D., Elkahloun, A., Basik, M., Bova, G. S., Bubendorf, L., Lugli, A., Sauter, G., Schleutker, J., Ozcelik, H. & 6 othersElowe, S., Pawson, T., Trent, J. M., Carpten, J. D., Kallioniemi, O. P. & Mousses, S., 2004, In : Nature Genetics. 36, p. 979-983 5 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Pathbase: A new reference resource and database for laboratory mouse pathology

Schofield, P. N., Bard, J. B. L., Boniver, J., Covelli, V., Delvenne, P., Ellender, M., Engstrom, W., Goessner, W., Gruenberger, M., Hoefler, H., Hopewell, J. W., Mancuso, M., Mothersill, C., Quintanilla-Martinez, L., Rozell, B., Sariola, H., Sundberg, J. P. & Ward, A., 2004, In : Radiation Protection Dosimetry. 112, p. 525-528 4 p.

Research output: Contribution to journalArticleScientificpeer-review

Phospholipid molecular species profiles of tectiviruses infecting Gram-negative and Gram-positive hosts

Laurinavicius, S., Kakela, R., Somerharju, P. & Bamford, DH., 1 May 2004, In : Virology. 322, 2, p. 328-336 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Techniques for studying protein heterogeneity and post-translational modifications

Baumann, M. & Meri, S., 2004, In : Expert review of proteomics.. 1, p. 207-217 11 p.

Research output: Contribution to journalArticleScientificpeer-review

The orexin/hypocretin system in zebrafish is connected to the aminergic and cholinergic systems

Kaslin, J., Nystedt, J. M., Ostergard, M., Peitsaro, N. & Panula, P., 2004, In : Journal of Neuroscience Research. 24, p. 2678-2689 12 p.

Research output: Contribution to journalArticleScientificpeer-review

The origin of phospholipids of the enveloped bacteriophage phi6

Laurinavicius, S., Kakela, R., Bamford, DH. & Somerharju, P., 15 Aug 2004, In : Virology. 326, 1, p. 182-190 9 p.

Research output: Contribution to journalArticleScientificpeer-review

The ubiquitin proteasome system in synaptic and axonal degeneration: a new twist to an old cycle

Korhonen, L. & Lindholm, D., 2004, In : Journal of Cell Biology. 165, p. 27-30 4 p.

Research output: Contribution to journalArticleScientificpeer-review

Variant late infantile neuronal ceroid lipofuscinosis in a subset of Turkish patients is allelic to northern epilepsy

Ranta, S., Topcu, M., Tegelberg, S., Tan, H., Ustubutun, A., Saatci, I., Dufke, A., Enders, H., Pohl, K., Alembik, Y., Mitchell, W. A., Mole, S. E. & Lehesjoki, A. E., 2004, In : Human Mutation. 23, p. 300-305 6 p.

Research output: Contribution to journalArticleScientificpeer-review

2003

A theoretical explanation for the retention mechanism of ion exclusion chromatography

Glod, B. K. & Baumann, M., 2003, In : Journal of Separation Science. 26, p. 1547-1553 7 p.

Research output: Contribution to journalArticleScientificpeer-review

FGFR1 is independently required in both developing mid- and hindbrain for sustained response to isthmic signals

Trokovic, R., Trokovic, N., Hernesniemi, S., Pirvola, U., Weisenhorn, D. M. V., Rossant, J., McMahon, A. P., Wurst, W. & Partanen, J., 2003, In : EMBO Journal. 22, p. 1811-1823 13 p.

Research output: Contribution to journalArticleScientificpeer-review

GDNF-deprived sympathetic neurons die via a novel nonmitochondrial pathway

Yu, L. Y., Jokitalo, E., Sun, Y. F., Mehlen, P., Lindholm, D., Saarma, M. & Arumae, U., 2003, In : Journal of Cell Biology. 163, p. 987-997 11 p.

Research output: Contribution to journalArticleScientificpeer-review