Department of Computer Science

  • Finland

Publications 1977 2020

2020

High-dimensional structure learning of binary pairwise Markov networks: A comparative numerical study

Pensar, J., Xu, Y., Puranen, S., Pesonen, M., Kabashima, Y. & Corander, J., 2020, In : Computational Statistics & Data Analysis. 141, p. 62-76 15 p.

Research output: Contribution to journalArticleScientificpeer-review

2019

5G Testbed Development for Network Slicing Evaluation

Shorov, A., 2019, PROCEEDINGS OF THE 2019 IEEE CONFERENCE OF RUSSIAN YOUNG RESEARCHERS IN ELECTRICAL AND ELECTRONIC ENGINEERING (EICONRUS). New York: IEEE, p. 39-44 6 p. (IEEE NW Russia Young Researchers in Electrical and Electronic Engineering Conference).

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

A Constrained Randomization Approach to Interactive Visual Data Exploration with Subjective Feedback

Kang, B., Puolamäki, K., Lijffijt, J. & Bie, T. D., 18 Apr 2019, In : IEEE Transactions on Knowledge and Data Engineering. 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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A Creative Dialog Generator for Fallout 4

Alnajjar, K. & Hämäläinen, M., 2019, Proceedings of the 14th International Conference on the Foundations of Digital Games. New York: ACM, 4 p. 48

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Action-Oriented Programming Model: Collective Executions and Interactions in the Fog

Mäkitalo, N., Aaltonen, T., Raatikainen, M., Ometov, A., Andreev, S., Koucheryavy, Y. & Mikkonen, T., 7 Aug 2019, In : The Journal of Systems and Software.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Additive multivariate Gaussian processes for joint species distribution modeling with heterogeneous data

Vanhatalo, J. P., Hartmann, M. & Veneranta, L., 2019, In : Bayesian analysis.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Admitting Students through an Open Online Course in Programming: A Multi-year Analysis of Study Success

Leinonen, J., Ihantola, P., Leinonen, A., Nygren, H., Kurhila, J., Luukkainen, M. & Hellas, A., Jun 2019, (Accepted/In press) Proceedings of the 15th ACM International Computing Education Research Conference (ICER '19). ACM

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Open Access
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A Humboldtian approach to life and climate of the geological past: Estimating palaeotemperature from dental traits of mammalian communities

Oksanen, O., Zliobaite, I., Saarinen, J., Lawing, A. M. & Fortelius, M., Aug 2019, In : Journal of Biogeography. 46, 8, p. 1760-1776 17 p.

Research output: Contribution to journalArticleScientificpeer-review

AI on the Move: From On-Device to On-Multi-Device

Flores Macario, H. R., Nurmi, P. T. & Hui, P., 2019, (Accepted/In press) Proceedings of the IEEE International Conference on Pervasive Computing and Communications (PerCom Workshops 2019). 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Open Access
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Algorithms for learning parsimonious context trees

Eggeling, R., Grosse, I. & Koivisto, M., Jun 2019, In : Machine Learning. 108, 6, p. 879-911 33 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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A Logical Approach to Context-Specific Independence

Corander, J., Hyttinen, A., Kontinen, J., Pensar, J. & Väänänen, J., Sep 2019, In : Annals of Pure and Applied Logic. 170, 9, p. 975-992 18 p.

Research output: Contribution to journalArticleScientificpeer-review

A major genetic turnover in the Finnish population since the Iron Age

Salmela, E., Majander, K., Lamnidis, T. C., Salo, K. H., Översti, S., Arppe, L., Belskiy, S., Etu-Sihvola, H., Laakso, V., Mikkola, E., Oinonen, M., Moilanen, U., Taavitsainen, J-P., Vuoristo, K., Wessman, A., Schiffels, S., Krause, J. & Onkamo, P., 3 Apr 2019.

Research output: Conference materialsPosterResearchpeer-review

Anagrelide for Gastrointestinal Stromal Tumor

Pulkka, O-P., Gebreyohannes, Y. K., Wozniak, A., Mpindi, J-P., Tynninen, O., Icay, K., Cervera, A., Keskitalo, S., Murumägi, A., Kulesskiy, E., Laaksonen, M., Wennerberg, K., Varjosalo, M., Laakkonen, P., Lehtonen, R., Hautaniemi, S., Kallioniemi, O., Schöffski, P., Sihto, H. & Joensuu, H., 1 Mar 2019, In : Clinical Cancer Research. 25, 5, p. 1676-1687 12 p.

Research output: Contribution to journalArticleScientificpeer-review

An Exploration of Cognitive Shifting in Writing Code

Fronza, I., Hellas, A., Ihantola, P. & Mikkonen, T., 2019, Proceedings of the ACM Conference on Global Computing Education (CompEd '19). New York, NY, USA: ACM, p. 65-71 7 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

An Integrated Hardware/Software Design Methodology for Signal Processing Systems

Li, L., Sau, C., Fanni, T., Li, J., Viitanen, T., Christophe, F., Palumbo, F., Raffo, L., Huttunen, H., Takala, J. & Bhattacharyya, S. S., Feb 2019, In : Journal of Systems Architecture. 93, p. 1-19 19 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Applying the Positional Burrows–Wheeler Transform to All-Pairs Hamming distance

Mäkinen, V. & Norri, T., Jun 2019, In : Information Processing Letters. 146, p. 17-19 3 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Bayesian meta-analysis across genome-wide association studies of diverse phenotypes

Trochet, H., Pirinen, M., Band, G., Jostins, L., McVean, G. & Spencer, C. C. A., Jul 2019, In : Genetic Epidemiology. 43, 5, p. 532-547 16 p.

Research output: Contribution to journalArticleScientificpeer-review

Brand as a cognitive mediator: investigating the effect of media brands as a structural feature of textual news messages

Laaksonen, S-M., Falco, A., Salminen, M., Aula, P. S. & Ravaja, N., 8 Mar 2019, In : Journal of Product and Brand Management. 28, 1, p. 1-14 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Breakthrough percepts of famous faces

Alsufyani, A., Hajilou, O., Zoumpoulaki, A., Filetti, M., Alsufyani, H., Solomon, C. J., Gibson, S. J., Alroobaea, R. & Bowman, H., Jan 2019, In : Psychophysiology. 56, 1, 20 p., 13279.

Research output: Contribution to journalArticleScientificpeer-review

Clustering Ideological Terms in Historical Newspaper Data with Diachronic Word Embeddings

Marjanen, J., Pivovarova, L., Zosa, E. & Kurunmäki, J., 2019, Proceedings of the 5th International Workshop on Computational History.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Cognitive ergonomics for data analysis

Kalakoski, V., Henelius, A., Oikarinen, E., Ukkonen, A. & Puolamäki, K., 2019, Proceedings of the 31st European Conference on Cognitive Ergonomics. ACM, p. 38-40

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Open Access
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Cognitive ergonomics for data analysis. Experimental study of cognitive limitations in a data-based judgement task

Kalakoski, V., Henelius, A., Oikarinen, E., Ukkonen, A. & Puolamäki, K., 2019, In : Behaviour & Information Technology.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen

Menden, M. P., Wang, D., Mason, M. J., Szalai, B., Bulusu, K. C., Guan, Y., Yu, T., Kang, J., Jeon, M., Wolfinger, R., Nguyen, T., Zaslavskiy, M., Abante, J., Abecassis, B. S., Aben, N., Aghamirzaie, D., Aittokallio, T., Akhtari, F. S., Al-lazikani, B., Alam, T. & 280 othersAllam, A., Allen, C., de Almeida, M. P., Altarawy, D., Alves, V., Amadoz, A., Anchang, B., Antolin, A. A., Ash, J. R., Aznar, V. R., Ba-alawi, W., Bagheri, M., Bajic, V., Ball, G., Ballester, P. J., Baptista, D., Bare, C., Bateson, M., Bender, A., Bertrand, D., Wijayawardena, B., Boroevich, K. A., Bosdriesz, E., Bougouffa, S., Bounova, G., Brouwer, T., Bryant, B., Calaza, M., Calderone, A., Calza, S., Capuzzi, S., Carbonell-Caballero, J., Carlin, D., Carter, H., Castagnoli, L., Celebi, R., Cesareni, G., Chang, H., Chen, G., Chen, H., Chen, H., Cheng, L., Chernomoretz, A., Chicco, D., Cho, K-H., Cho, S., Choi, D., Choi, J., Choi, K., Choi, M., Cock, M. D., Coker, E., Cortes-Ciriano, I., Cserzö, M., Cubuk, C., Curtis, C., Daele, D. V., Dang, C. C., Dijkstra, T., Dopazo, J., Draghici, S., Drosou, A., Dumontier, M., Ehrhart, F., Eid, F-E., ElHefnawi, M., Elmarakeby, H., van Engelen, B., Engin, H. B., de Esch, I., Evelo, C., Falcao, A. O., Farag, S., Fernandez-Lozano, C., Fisch, K., Flobak, A., Fornari, C., Foroushani, A. B. K., Fotso, D. C., Fourches, D., Friend, S., Frigessi, A., Gao, F., Gao, X., Gerold, J. M., Gestraud, P., Ghosh, S., Gillberg, J., Godoy-Lorite, A., Godynyuk, L., Godzik, A., Goldenberg, A., Gomez-Cabrero, D., Gonen, M., de Graaf, C., Gray, H., Grechkin, M., Guimera, R., Guney, E., Haibe-Kains, B., Han, Y., Hase, T., He, D., He, L., Heath, L. S., Hellton, K. H., Helmer-Citterich, M., Hidalgo, M. R., Hidru, D., Hill, S. M., Hochreiter, S., Hong, S., Hovig, E., Hsueh, Y-C., Hu, Z., Huang, J. K., Huang, R. S., Hunyady, L., Hwang, J., Hwang, T. H., Hwang, W., Hwang, Y., Isayev, O., Don’t Walk, O. B., Jack, J., Jahandideh, S., Ji, J., Jo, Y., Kamola, P. J., Kanev, G. K., Karacosta, L., Karimi, M., Kaski, S., Kazanov, M., Khamis, A. M., Khan, S. A., Kiani, N. A., Kim, A., Kim, J., Kim, J., Kim, K., Kim, K., Kim, S., Kim, Y., Kim, Y., Kirk, P. D. W., Kitano, H., Klambauer, G., Knowles, D., Ko, M., Kohn-Luque, A., Kooistra, A. J., Kuenemann, M. A., Kuiper, M., Kurz, C., Kwon, M., van Laarhoven, T., Laegreid, A., Lederer, S., Lee, H., Lee, J., Lee, Y. W., Lepp_aho, E., Lewis, R., Li, J., Li, L., Liley, J., Lim, W. K., Lin, C., Liu, Y., Lopez, Y., Low, J., Lysenko, A., Machado, D., Madhukar, N., Maeyer, D. D., Malpartida, A. B., Mamitsuka, H., Marabita, F., Marchal, K., Marttinen, P., Mason, D., Mazaheri, A., Mehmood, A., Mehreen, A., Michaut, M., Miller, R. A., Mitsopoulos, C., Modos, D., Moerbeke, M. V., Moo, K., Motsinger-Reif, A., Movva, R., Muraru, S., Muratov, E., Mushthofa, M., Nagarajan, N., Nakken, S., Nath, A., Neuvial, P., Newton, R., Ning, Z., Niz, C. D., Oliva, B., Olsen, C., Palmeri, A., Panesar, B., Papadopoulos, S., Park, J., Park, S., Park, S., Pawitan, Y., Peluso, D., Pendyala, S., Peng, J., Perfetto, L., Pirro, S., Plevritis, S., Politi, R., Poon, H., Porta, E., Prellner, I., Preuer, K., Pujana, M. A., Ramnarine, R., Reid, J. E., Reyal, F., Richardson, S., Ricketts, C., Rieswijk, L., Rocha, M., Rodriguez-Gonzalvez, C., Roell, K., Rotroff, D., de Ruiter, J. R., Rukawa, P., Sadacca, B., Safikhani, Z., Safitri, F., Sales-Pardo, M., Sauer, S., Schlichting, M., Seoane, J. A., Serra, J., Shang, M-M., Sharma, A., Sharma, H., Shen, Y., Shiga, M., Shin, M., Shkedy, Z., Shopsowitz, K., Sinai, S., Skola, D., Smirnov, P., Soerensen, I. F., Soerensen, P., Song, J-H., Song, S. O., Soufan, O., Spitzmueller, A., Steipe, B., Suphavilai, C., Tamayo, S. P., Tamborero, D., Tang, J., Tanoli, Z-R., Tarres-Deulofeu, M., Tegner, J., Thommesen, L., Tonekaboni, S. A. M., Tran, H., Troyer, E. D., Truong, A., Tsunoda, T., Turu, G., Tzeng, G-Y., Verbeke, L., Videla, S. & Consortium, A-S. D. C. DREAM., 17 Jun 2019, In : Nature Communications. 10, 1, 17 p., 2674.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Computational Creativity Infrastructure for Online Software Composition: A Conceptual Blending Use Case

Martins, P., Goncalo Oliveira, H., Carlos Gonçalves, J., Cruz, A., Cardoso, A., Žnidaršič, M., Lavrač, N., Linkola, S., Toivonen, H., Hervás, R., Méndez, G. & Gervás, P., 8 Feb 2019, In : IBM Journal of Research and Development. 63, 1, p. 9:1-9:17 17 p.

Research output: Contribution to journalArticleScientificpeer-review

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Concept drift over geological times: predictive modeling baselines for analyzing the mammalian fossil record

Žliobaite, I., May 2019, In : Data Mining and Knowledge Discovery. 33, 3, p. 773-803 31 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Conceptual Representations for Computational Concept Creation

Xiao, P., Toivonen, H., Gross, O., Cardoso, A., Correia, J., Machado, P., Martins, P., Goncalo Oliveira, H., Sharma, R., Pinto, A. M., Diaz, A., Francisco, V., Gervás, P., Hervas, R., León, C., Forth, J., Purver, M., Wiggins, G. A., Miljkovic, D., Podpecan, V. & 8 othersPollak, S., Kralj, J., Znidarsic, M., Bohanec, M., Lavrač, N., Urbancic, T., Van Der Velde, F. & Battersby, S., Feb 2019, In : ACM Computing Surveys. 52, 1, 33 p., 9.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Coping with Inconsistent Models of Requirements

Tiihonen, J., Raatikainen, M., Myllyaho, L., Lüders, C. M. & Männistö, T., 2019, Workshop on Configuration 2019.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

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Core-Boosted Linear Search for Incomplete MaxSAT

Berg, O. J., Demirovic, E. & Stuckey, P., 2019, (Accepted/In press) Proceedings of the The 16th International Conference on the Integration of Constraint Programming, Artificial Intelligence, and Operations Research (CPAIOR 2019) . Springer, (Lecture Notes in Computer Science ).

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Counting and Sampling Markov Equivalent Directed Acyclic Graphs

Talvitie, T. & Koivisto, M., 2019, Thirty-Third AAAI Conference on Artificial Intelligence. AAAI Press, p. 7984-7991

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Open Access

Counting graded lattices of rank 3 that have few coatoms

Kohonen, J., Jun 2019, In : International Journal of Algebra and Computation. 29, 4, p. 663-680 18 p.

Research output: Contribution to journalArticleScientificpeer-review

Counting Linear Extensions: Parameterizations by Treewidth

Eiben, E., Ganian, R., Kangas, K. & Ordyniak, S., Apr 2019, In : Algorithmica. 81, 4, p. 1657-1683 27 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Creative Contextual Dialog Adaptation in an Open World RPG

Hämäläinen, M. & Alnajjar, K., 2019, Proceedings of the 14th International Conference on the Foundations of Digital Games. New York: ACM, 7 p. 73

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Criterion-Based Grading, Agile Goal Setting, and Course (Un)Completion Strategies

Ihantola, P., Isohanni, E., Heino, P. & Mikkonen, T., 2019, Agile and Lean Concepts for Teaching and Learning: Bringing Methodologies from Industry to the Classroom. Parsons, D. & MacCallum, K. (eds.). Singapore: Springer, p. 207-230 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Cross-Device Radio Map Generation via Crowdsourcing

Tsiamitros, N., Pipelidis, G., Nurmi, P., Ustaoglu, E., Kienzler, R., Flores, H. & Prehofer, C., 2019, (Accepted/In press) International conference on Indoor Positioning and Indoor Navigation (IPIN).

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Cross-Family Similarity Learning for Cognate Identification in Low-Resource Languages

Soisalon-Soininen, E. & Granroth-Wilding, M., 4 Sep 2019, Proceedings of Recent Advances in Natural Language Processing. Association for Computational Linguistics, p. 1122-1131 10 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Open Access

Crowd Replication: Sensing-Assisted Quantification of Human Behaviour in Public Spaces

Hemminki, J. J. S., Nurmi, P. T., Tarkoma, S. A. O., Konomi, SI. & KURIBAYASHI, K., 2019, (Accepted/In press) In : ACM transactions on spatial algorithms and systems.

Research output: Contribution to journalArticleScientificpeer-review

Dandelion: A Unified Code Offloading System for Wearable Computing

Golkarifard, M., Yang, J., Huang, Z., Movaghar, A. & Hui, P., 1 Mar 2019, In : IEEE Transactions on Mobile Computing. 18, 3, p. 546-559 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Decoding attentional states for neurofeedback: Mindfulness vs. wandering thoughts

Zhigalov, A., Heinilä, E., Parviainen, T., Parkkonen, L. & Hyvärinen, A., 15 Jan 2019, In : NeuroImage. 185, p. 565-574 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Designing a Prototype Architecture for Crowdsourcing Language Resources

Rodosthenous, C., Lyding, V., König, A., Horbacauskiene, J., Katinskaia, A., Ul Hassan, U., Isaak, N., Sangati, F. & Nicolas, L., 2019, (Accepted/In press) In : Language, Data and Knowledge (LDK).

Research output: Contribution to journalConference articleScientificpeer-review

Developing hand-worn input and haptic support for real-world target finding

Hsieh, Y-T., Jylhä, A., Orso, V., Andolina, S., Hoggan, E., Gamberini, L. & Jacucci, G., Feb 2019, In : Personal and Ubiquitous Computing. 23, 1, p. 117-132 16 p.

Research output: Contribution to journalArticleScientificpeer-review

DNMT Inhibitors Increase Methylation in the Cancer Genome

Giri, A. K. & Aittokallio, T., 24 Apr 2019, In : Frontiers in Pharmacology. 10, 11 p., 385.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Do all chlorophyll fluorescence emission wavelengths capture the spring recovery of photosynthesis in boreal evergreen foliage?

Zhang, C., Atherton, J., Penuelas, J., Filella, I., Kolari, P., Aalto, J., Ruhanen, H., Back, J. & Porcar-Castell, A., 16 Aug 2019, In : Plant, Cell and Environment. 16 p.

Research output: Contribution to journalArticleScientificpeer-review

Does Creating Programming Assignments with Tests Lead to Improved Performance in Writing Unit Tests?

Kangas, V., Pirttinen, N., Nygren, H., Leinonen, J. & Hellas, A., 9 May 2019, CompEd '19: Proceedings of the ACM Conference on Global Computing Education. New York: ACM, p. 106-112 7 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Effects of live music therapy on heart rate variability and self-reported stress and anxiety among hospitalized pregnant women: A randomized controlled trial

Teckenberg-Jansson, P., Turunen, S., Pölkki, T., Lauri-Haikala, M-J., Lipsanen, J., Henelius, A., Aitokallio-Tallberg, A., Pakarinen, S., Leinikka, M. & Huotilainen, M., 2019, In : Nordic Journal of Music Therapy. 28, 1, p. 7-26 20 p.

Research output: Contribution to journalArticleScientificpeer-review

Efficient Autotuning of Hyperparameters in Approximate Nearest Neighbor Search

Jääsaari, E., Hyvönen, V. & Roos, T., 17 Apr 2019, Advances in Knowledge Discovery and Data Mining: 23rd Pacific-Asia Conference, PAKDD 2019, Macau, China, April 14-17, 2019, Proceedings, Part II. Cham: Springer, p. 590-602 13 p. (Lecture Notes in Artificial Intelligence; vol. 11440).

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Open Access
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Electrophysiological correlates of response inhibition training on high and low calorie food cues

Aulbach, M., Harjunen, V. J., Spape, M., Knittle, K., Haukkala, A. & Ravaja, N., 2019, (Submitted).

Research output: Conference materialsOther conference materialResearchpeer-review

Enhanced Augmented Reality Applications in Vehicle-to-Edge Networks

Zhou, P., Zhang, W., Braud, T., Hui, P. & Kangasharju, J., 2019, PROCEEDINGS OF THE 2019 22ND CONFERENCE ON INNOVATION IN CLOUDS, INTERNET AND NETWORKS AND WORKSHOPS (ICIN). Galis, A., Guillemin, F., Secci, R., Idzikowski, F. & Sayit, MF. (eds.). New York: IEEE, p. 167-174 8 p. (Conference on Innovations in Clouds Internet and Networks).

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

ERL: Edge Based Reinforcement Learning for Optimized Urban Traffic Light Control

Zhou, P., Alhilal, A., Braud, T., Hui, P. & Kangasharju, J., 15 Mar 2019, The 2019 IEEE PerCom workshop on Smart Edge Computing and Networking (SmartEdge'19) . 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Evaluating Energy-Efficiency using Thermal Imaging

Flores, H., Hamberg, J., Li, X., Malmivirta, T., Zuniga, A., Lagerspetz, E. & Nurmi, P., 2019, HotMobile '19: Proceedings of the 20th International Workshop on Mobile Computing Systems and Applications. New York: ACM, p. 147-152 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Open Access
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Evolutionary Hysteresis and Ratchets in the Evolution of Periodical Cicadas

Toivonen, J. & Fromhage, L., 1 Jul 2019, In : American Naturalist. 194, 1, p. 38-46 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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