Department of Computer Science

  • Finland

Publications 1977 2020

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Review Article
2018

A survey of evaluation methods for personal route and destination prediction from mobility traces

Stegmann, R. A., Zliobaite, I., Tolvanen, T., Hollmén, J. & Read, J., Mar 2018, In : Wiley interdisciplinary reviews. Data mining and knowledge discovery. 8, 2, 18 p., e1237.

Research output: Contribution to journalReview ArticleScientificpeer-review

Automated Analysis of Freeware Installers Promoted by Download Portals

Geniola, A., Antikainen, M. & Aura, T., Aug 2018, In : Computers & Security. 77, p. 209-225 17 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Open Access
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Improving the efficacy-safety balance of polypharmacology in multi-target drug discovery

Ravikumar, B. & Aittokallio, T., 2018, In : Expert opinion on drug discovery. 13, 2, p. 179-192 14 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

2017

Security and Privacy in Device-to-Device (D2D) Communication: A Review

Haus, M., Waqas, M., Ding, A. Y., Li, Y., Tarkoma, S. & Ott, J., Jan 2017, In : Communications Surveys & Tutorials. 19, 2, p. 1054-1079 26 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

2016

Digital competence – an emergent boundary concept for policy and educational research

Ilomäki, L., Paavola, S., Lakkala, M. & Kantosalo, A., May 2016, In : Education and Information Technologies. 21, 3, p. 655-679 25 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

International conference «new developments in the quantitative study of languages»

Kirjanov, D. P. & Pivovarova, L. M., 2016, In : Voprosy âzykoznaniâ. 2016, 2, p. 152-158 7 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Multi-Omics Studies towards Novel Modulators of Influenza A Virus-Host Interaction

Soderholm, S., Fu, Y., Gaelings, L., Belanov, S., Yetukuri, L., Berlinkov, M., Cheltsov, A. V., Anders, S., Aittokallio, T., Nyman, T. A., Matikainen, S. & Kainov, D. E., Oct 2016, In : Viruses. 8, 10, 15 p., 269.

Research output: Contribution to journalReview ArticleScientificpeer-review

Open Access
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Prognostic value of tumour budding in oesophageal cancer: a meta-analysis

Almangush, A., Karhunen, M., Hautaniemi, S., Salo, T. & Leivo, I., Jan 2016, In : Histopathology. 68, 2, p. 173-182 10 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

The psychophysiology primer: A guide to methods and a broad review with a focus on human-computer interaction

Cowley, B. U., Filetti, M., Lukander, K., Torniainen, J., Helenius, A., Ahonen, L., Barral Mery de Bellegarde, O., Kosunen, I. J., Valtonen, T., Huotilainen, M. J., Ravaja, J. N. & Jacucci, G., 2016, In : Foundations and Trends in Human-Computer Interaction. 9, 3-4, p. 151-308

Research output: Contribution to journalReview ArticleScientificpeer-review

Open Access
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Transcriptional response networks for elucidating mechanisms of action of multitargeted agents

Kibble, M., Khan, S. A., Saarinen, N., Iorio, F., Saez-Rodriguez, J., Makela, S. & Aittokallio, T., Jul 2016, In : Drug Discovery Today. 21, 7, p. 1063-1075 13 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Open Access
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2015

Data Mining and Machine Learning in Computational Creativity

Toivonen, H. & Gross, O., 2015, In : Wiley interdisciplinary reviews. Data mining and knowledge discovery. 5, 6, p. 265-275 11 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Identification of drug candidates and repurposing opportunities through compound-target interaction networks

Cichonska, A., Rousu, J. & Aittokallio, T., 2 Dec 2015, In : Expert opinion on drug discovery. 10, 12, p. 1333-1345 13 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Open Access
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Network pharmacology applications to map the unexplored target space and therapeutic potential of natural products

Kibble, M., Saarinen, N., Tang, J., Wennerberg, K., Makela, S. & Aittokallio, T., 2015, In : Natural Product Reports. 32, 8, p. 1249-1266 18 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Physiological Computing

Jacucci, G., Fairclough, S. & Solovey, E. T., 1 Oct 2015, In : Computer : a publication of the IEEE Computer Society. 48, 10, p. 12-16 5 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

What is synergy? The Saariselka agreement revisited

Tang, J., Wennerberg, K. & Aittokallio, T., 1 Sep 2015, In : Frontiers in Pharmacology. 6, 5 p., 181.

Research output: Contribution to journalReview ArticleScientificpeer-review

Open Access
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2014

Regularized Machine Learning in the Genetic Prediction of Complex Traits

Okser, S., Pahikkala, T., Airola, A., Salakoski, T., Ripatti, S. & Aittokallio, T., Nov 2014, In : PLoS Genetics. 10, 11, 9 p., 1004754.

Research output: Contribution to journalReview ArticleScientificpeer-review

Open Access
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2013

An overview of Internet biosurveillance

Hartley, D. M., Nelson, N. P., Arthur, R. R., Barboza, P., Collier, N., Lightfoot, N., Linge, J. P., van der Goot, E., Mawudeku, A., Madoff, L. C., Vaillant, L., Walters, R., Yangarber, R., Mantero, J., Corley, C. D. & Brownstein, J. S., Nov 2013, In : Clinical Microbiology and Infection. 19, 11, p. 1006-1013 8 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Approximate Bayesian Computation

Sunnåker, M., Busetto, A., Numminen, E., Corander, J., Foll, M. & Dessimoz, C., 2013, In : PLoS Computational Biology. 9, 1, 10 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Genetic variants and their interactions in disease risk prediction - machine learning and network perspectives

Okser, S., Pahikkala, T. & Aittokallio, T., 1 Mar 2013, In : BioData mining. 6, p. Article Number: UNSP 5 16 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Open Access
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Independent component analysis: recent advances

Hyvärinen, A., 13 Feb 2013, In : Philosophical transactions - Royal Society. Mathematical, Physical and engineering sciences. 371, 1984, 19 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Survey of local algorithms

Suomela, J., 2013, In : ACM Computing Surveys. 45, 2, p. Article No. 24 40 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

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2012

Requirements and constructors for tailoring software processes: a systematic literature review

Martínez-Ruiz, T., Münch, J., García, F. & Piattini, M., 2012, In : Software Quality Journal. 20, 1, p. 229-260 32 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Theory and Practice of Bloom Filters for Distributed Systems

Tarkoma, S., Rothenberg, C. E. & Lagerspetz, E., 2012, In : Communications Surveys & Tutorials. 14, 1, p. 131-155 25 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

2011

Limitations in Bonding to Dentin and Experimental Strategies to Prevent Bond Degradation

Liu, Y., Tjaderhane, L., Breschi, L., Mazzoni, A., Li, N., Mao, J., Pashley, D. H. & Tay, F. R., Aug 2011, In : Journal of Dental Research. 90, 8, p. 953-968 16 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

2010

Statistical models of natural images and cortical visual representation

Hyvärinen, A., 2010, In : Topics in Cognitive Science. 2 , 2, p. 251-264 14 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

2007

Probabilistic modeling and machine learning in structural and systems biology

Kaski, S., Rousu, J. & Ukkonen, E., 2007, In : BMC Bioinformatics. 8, Suppl 2, p. S1

Research output: Contribution to journalReview ArticleScientificpeer-review

2006

Evolution and the GDNF family ligands and receptors

Airaksinen, M. S., Holm, L. & Hätinen, T., 2006, In : Brain, Behavior and Evolution. 68, 3, p. 181-190 10 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Systeemibiologia syöpätutkimuksessa: [katsaus]

Hautaniemi, S., Vallenius, T. & Mäkelä, T., 2006, In : Duodecim. 122, p. 2484-2490 7 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

1995

CELLULAR AND MOLECULAR-BIOLOGY OF CHRONIC REJECTION

HAYRY, P., ALATALO, S., MYLLARNIEMI, M., RAISANENSOKOLOWSKI, A. & LEMSTROM, K., Feb 1995, In : Transplantation Proceedings. 27, p. 71-74 4 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

MOLECULAR MECHANISMS OF CHRONIC RENAL-ALLOGRAFT REJECTION

LEMSTROM, K., KOSKINEN, P. & HAYRY, P., Dec 1995, In : Kidney International. 48, p. S2-S10 9 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

1992

TOWARDS UNDERSTANDING THE PATHOPHYSIOLOGY OF CHRONIC REJECTION

HAYRY, P., MENNANDER, A., YILMAZ, S., USTINOV, J., RAISANEN, A., MIETTINEN, A., LAUTENSCHLAGER, T., LEMSTROM, K., BRUGGEMAN, CA. & PAAVONEN, T., Sep 1992, In : The Clinical Investigator. 70, 9, p. 780-790 11 p.

Research output: Contribution to journalReview ArticleScientificpeer-review