• Finland

  • Finland

Publications 1981 2019

2019

Antibacterial polymer fibres by rosin compounding and melt-spinning

Kanerva, M., Puolakka, A., Takala, T. M., Elert, A. M., Mylläri, V., Jönkkäri, I., Sarlin, E., Seitsonen, J., Ruokolainen, J., Saris, P. & Vuorinen, J., 8 May 2019, In : Materials Today Communications.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Antibiotic Resistance Genes in the Human-Impacted Environment: A One Health Perspective

Tiedje, J. M., Wang Fang, Manaia, C. M., Virta, M., Sheng Hongjie, Ma Liping, Zhang Tong & Topp, E., Jun 2019, In : Pedosphere. 29, 3, p. 273-282 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Antibiotic resistance in European wastewater treatment plants mirrors the pattern of clinical antibiotic resistance prevalence

Parnanen, K. M. M., Narciso-da-Rocha, C., Kneis, D., Berendonk, T. U., Cacace, D., Thi Thuy Do, Elpers, C., Fatta-Kassinos, D., Henriques, I., Jaeger, T., Karkman, A., Luis Martinez, J., Michael, S. G., Michael-Kordatou, I., O'Sullivan, K., Rodriguez-Mozaz, S., Schwartz, T., Sheng, H., Sorum, H., Stedtfeld, R. D. & 6 othersTiedje, J. M., Varela Della Giustina, S., Walsh, F., Vaz-Moreira, I., Virta, M. & Manaia, C. M., Mar 2019, In : Science Advances. 5, 3, 10 p., 9124.

Research output: Contribution to journalArticleScientificpeer-review

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Dehydroabietylamine-Based Cellulose Nanofibril Films: A New Class of Sustainable Biomaterials for Highly Efficient, Broad-Spectrum Antimicrobial Effects

Hassan, G. A. M. S., Forsman, N., Wan, X., Keurulainen, L., Bimbo, L. M., Johansson, L-S., Sipari, N., Yli-Kauhaluoma, J. T., Zimmermann, R., Stehl, S., Werner, C., Saris, P. E. J., Österberg, M. & Moreira, V. M., 4 Mar 2019, In : ACS Sustainable Chemistry & Engineering. 7, 5, p. 5002-5009 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Developments and opportunities in fungal strain engineering for the production of novel enzymes and enzyme cocktails for plant biomass degradation

Kun, R., Gomes, A. C. S., Hilden, S. K., Salazar Cerezo, S., Mäkelä, M. R. & de Vries, R., 27 Feb 2019, In : Biotechnology Advances.

Research output: Contribution to journalReview ArticleScientificpeer-review

Draft genome sequences of three monokaryotic isolates of the white-rot basidiomycete fungus Dichomitus squalens

Casado López, S., Peng, M., Daly, P., Andreopoulos, B., Pangilinan, J., Lipzen, A., Riley, R., Ahrendt, S., Ng, V., Barry, K., Daum, C., Grigoriev, I. V., Hilden, S. K., Mäkelä, M. R. & de Vries, R. P., 2019, (Accepted/In press) In : Microbiology Resource Announcements.

Research output: Contribution to journalArticleScientificpeer-review

Fecal pollution can explain antibiotic resistance gene abundances in anthropogenically impacted environments

Karkman, A., Parnanen, K. & Larsson, D. G. J., 8 Jan 2019, In : Nature Communications. 10, 8 p., 80.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Field-compatible protocol for detecting tetracyclines with bioluminescent bioreporters without pipetting steps

Muurinen, J., Pasupulate, A., Lappalainen, J. & Virta, M., Mar 2019, In : Luminescence. 34, 2, p. 249-254 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Genome description of Phlebia radiata 79 with comparative genomics analysis on lignocellulose decomposition machinery of phlebioid fungi

Mäkinen, M., Kuuskeri, J., Laine, P., Smolander, O-P., Kovalchuk, A., Zeng, Z., Asiegbu, F., Paulin, L., Auvinen, P. & Lundell, T., 28 May 2019, In : BMC Genomics. 20, 22 p., 430.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Identification and structural analysis of cereal arabinoxylan-derived oligosaccharides by negative ionization HILIC-MS/MS

Juvonen, M. K., Kotiranta, M., Jokela, J. K., Tuomainen, P. & Tenkanen, T. M., 1 Mar 2019, In : Food Chemistry. 275, p. 176-185 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Interaction between tannins and fungal necromass stabilizes fungal residues in boreal forest soils

Adamczyk, B., Sietio, O-M., Biasi, C. & Heinonsalo, J., Jul 2019, In : New Phytologist. 223, 1, p. 16-21 6 p.

Research output: Contribution to journalArticleScientific

Introduction to Special Issue of Molecular Plant Pathology - “Extracellular and intracellular perception of plant viruses”.

Aranda, M., Mäkinen, K. & Verchot, J., 2 Jun 2019, (Accepted/In press)

Research output: Book/ReportAnthology or special issueScientific

L-LEUCINE COATED INHALABLE TEICOPLANIN POWDERS PRODUCED BY AEROSOL FLOW REACTOR METHOD

Ugur, N., Bimbo, L. M., Saris, P., Vartiainen, V., Hirvonen, J., Kauppinen, E. I. & Raula, J., 1 Jun 2019, In : Journal of Aerosol Medicine and Pulmonary Drug Delivery. 32, 3, p. A18-A19 2 p.

Research output: Contribution to journalMeeting AbstractResearchpeer-review

Midbiotics: conjugative plasmids for genetic engineering of natural gut flora

Ruotsalainen, P., Penttinen, R., Mattila, S. & Jalasvuori, M., 5 Apr 2019, In : Gut Microbes. p. 1-11 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Occurrence of sul and tet(M) genes in bacterial community in Japanese marine aquaculture environment throughout the year: Profile comparison with Taiwanese and Finnish aquaculture waters

Suzuki, S., Nakanishi, S., Tamminen, M., Yokokawa, T., Sato-Takabe, Y., Ohta, K., Chou, H-Y., Muziasari, W. I. & Virta, M., 15 Jun 2019, In : Science of the Total Environment. 669, p. 649-656 8 p.

Research output: Contribution to journalArticleScientificpeer-review

On the role of hot water extraction as a pretreatment method in search for soft pulping methods for modern biorefineries.

Sipilä, J., Hyväkkö, U., Maltari, R., Kakko, T-A., Kontro, J., Mikkilä, J. A., Kilpeläinen, P., Enqvist, E., Tikka, P., Hilden, K. & Nousiainen, P. A., 31 Mar 2019, 257th American Chemical Society (ACS) : Chemistry for New Frontiers. Orlando, Florida, Vol. 257. p. 1 (257th American Chemical Society (ACS) National Meeting & Exposition: Chemistry for New Frontiers; vol. 257).

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Open Access
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The Biosynthesis of Rare Homo-Amino Acid Containing Variants of Microcystin by a Benthic Cyanobacterium

Shishido, T. K., Jokela, J., Humisto, A., Suurnäkki, S., Wahlsten, M., Oliveria de Alvarenga, D., Sivonen, K. & Fewer, D., 7 May 2019, In : Marine Drugs. 17, 5, p. 1 16 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access

The presence of trace components significantly broadens the molecular response of Aspergillus niger to guar gum

Coconi Linares, N., Di Falco, M., Benoit, I., Gruben, B., Peng, M., Tsang, A., Mäkelä, M. R. & de Vries, R., 2019, In : New Biotechnology.

Research output: Contribution to journalArticleScientificpeer-review

The significance of methionine cycle enzymes in plant virus infections

Mäkinen, K. M. & Swarnalok, D., 6 Apr 2019, In : Current Opinion in Plant Biology. 50, p. 67-75 9 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Open Access
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Unraveling the diversity of sedimentary sulfate-reducing prokaryotes (SRP) across Tibetan saline lakes using epicPCR

Qin, H., Wang, S., Feng, K., He, Z., Virta, M. P. J., Hou, W., Dong, H. & Deng, Y., 4 May 2019, In : Microbiome. 7, 12 p., 71.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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2018

Alternative biosynthetic starter units enhance the structural diversity of cyanobacterial lipopeptides

Mareš, J., Hajek, J., Urajova, P., Kust, A., Jokela, J. K., Saurav, K., Galica, T., Čapková, K., Mattila, A. I., Haapaniemi, E., Permi, P., Mysterud, I., Skulberg, O., Karlsen, J., Fewer, D. P., Sivonen, A. K., Tønnesen, H. & Hrouzek, P., 28 Nov 2018, (Accepted/In press) In : Applied and Environmental Microbiology. AEM02675-18R1 .

Research output: Contribution to journalArticleScientificpeer-review

Antibiotic-Resistance Genes in Waste Water

Karkman, A. V., Thuy Do, T., Walsh, F. & Virta, M. P. J., Mar 2018, In : Trends in Microbiology. 26, 3, p. 220-228 9 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Antifungal and Antileukemic Compounds from Cyanobacteria: Bioactivity, Biosynthesis, and Mechanism of Action

Humisto, A. K., 23 Nov 2018, Helsinki: University of Helsinki. 72 p.

Research output: ThesisDoctoral ThesisCollection of Articles

Open Access

Antimicrobial resistance and the environment: assessment of advances, gaps and recommendations for agriculture, aquaculture and pharmaceutical manufacturing

Topp, E., Larsson, D. G. J., Miller, D. N., Van den Eede, C. & Virta, M. P. J., Mar 2018, In : FEMS Microbiology Ecology. 94, 3, 5 p., 185.

Research output: Contribution to journalReview ArticleScientificpeer-review

Open Access
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Archaea are prominent members of the prokaryotic communities colonizing common forest mushrooms

Rinta-Kanto, J. M., Pehkonen, K., Sinkko, H., Tamminen, M. V. & Timonen, S., Oct 2018, In : Canadian Journal of Microbiology. 64, 10, p. 716-726 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Basidiomycete Genomics

de Vries, R., Mäkelä, M. R., Hilden, S. K. & Kämper, J., Mar 2018, In : Fungal Genetics and Biology. 112, 1, p. 1-1 1 p.

Research output: Contribution to journalEditorialScientific

Biochemical characterization of laccases from the white-rot fungus Obba rivulosa

Kähkönen, M. A., Nousiainen, P. A., Kontro, J. H. S., Marinovic, M., Baig, I., Kamer, P., Sipilä, A. J., Mäkelä, M. R. & Hilden, S. K., 29 Aug 2018, p. 32.

Research output: Conference materialsAbstractResearchpeer-review

Open Access

Biosynthesis of microcystin hepatotoxins in the cyanobacterial genus Fischerella

Heck, K., Alvarenga, D. O., Shishido, T. K., Varani, A. M., Dorr, F. A., Pinto, E., Rouhiainen, L., Jokela, J., Sivonen, K. & Fiore, M. F., Jan 2018, In : Toxicon. 141, p. 43-50 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Black Queen Evolution and Trophic Interactions Determine Plasmid Survival after the Disruption of the Conjugation Network

Cairns, J., Koskinen, K., Penttinen, R., Patinen, T., Hartikainen, A., Jokela, R., Ruusulehto, L., Viitamäki, S., Mattila, S., Hiltunen, T. & Jalasvuori, M., 2 Oct 2018, In : mSystems. 3, 5, 14 p., e00104-18.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Characterization of a feruloyl esterase from Aspergillus terreus facilitates the division of fungal enzymes from Carbohydrate Esterase family 1 of the carbohydrate-active enzymes (CAZy) database

Mäkelä, M. R., Dilokpimol, A., Koskela, S. M., Kuuskeri, J., de Vries, R. P. & Hilden, K., Sep 2018, In : Microbial Biotechnology. 11, 5, p. 869-880 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Characterization of a feruloyl esterase from Aspergillus terreus facilitates the division of fungal enzymes from Carbohydrate Esterase family 1 of the CAZy database

Mäkelä, M. R., Dilokpimol, A., Koskela, S. M., Kuuskeri, J. T., de Vries, R. & Hilden, S. K., 2018, (Accepted/In press) In : Microbial Biotechnology.

Research output: Contribution to journalArticleScientificpeer-review

Co-expression of Nisin Z and Leucocin C as a Basis for Effective Protection Against Listeria monocytogenes in Pasteurized Milk

Fu, Y., Qiao, W., Zhu, D., Wang, X., Liu, F., Xu, H., Saris, P. E. J., Kuipers, O. & Qiao, M., 23 Mar 2018, In : Frontiers in Microbiology. 2018 / 9 , p. 1 - 11 11 p., 547.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Comparative analysis of basidiomycete transcriptomes reveals a core set of expressed genes encoding plant biomass degrading enzymes

Peng, M., Aguilar-Pontes, M. V., Hainaut, M., Henrissat, B., Hilden, K., Mäkelä, M. R. & de Vries, R. P., Mar 2018, In : Fungal Genetics and Biology. 112, p. 40-46 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Comparative Genomics of the Baltic Sea Toxic Cyanobacteria Nodularia spumigena UHCC 0039 and Its Response to Varying Salinity

Teikari, J. E., Hou, S., Wahlsten, M., Hess, W. R. & Sivonen, K., 8 Mar 2018, In : Frontiers in Microbiology. 9, 13 p., 356.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Construction and characterization of synthetic bacterial community for experimental ecology and evolution

Cairns, J., Jokela, R., Hultman, J., Tamminen, M., Virta, M. & Hiltunen, T., 14 Aug 2018, In : Frontiers in Genetics. 9, 12 p., 312.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Contribution of YthA, a PspC family transcriptional regulator to Lactococcus lactis F44 acid tolerance and nisin yield: a transcriptomic approach

Wu, H., Liu, J., Miao, S., Zhao, Y., Zhu, H., Qiao, M., Saris, P. E. J. & Qiao, J., Mar 2018, In : Applied and Environmental Microbiology. 84, 6, p. 1-20 20 p., UNSP e02483-17.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Coupling biogeochemical process rates and metagenomic blueprints of coastal bacterial assemblages in the context of environmental change

Markussen, T., Happel, E. M., Teikari, J. E., Huchaiah, V., Alneberg, J., Andersson, A. F., Sivonen, A. K., Riemann, L., Middelboe, M. & Kisand, V., 1 Aug 2018, In : Environmental Microbiology. 20, 8, p. 3083-3099 17 p.

Research output: Contribution to journalArticleScientificpeer-review

Critical knowledge gaps and research needs related to the environmental dimensions of antibiotic resistance

Larsson, D. G. J., Andremont, A., Bengtsson-Palme, J., Brandt, K. K., Husman, A. M. D. R., Fagerstedt, P., Fick, J., Flach, C-F., Gaze, W. H., Kuroda, M., Kvint, K., Laxminarayan, R., Manaia, C. M., Nielsen, K. M., Plant, L., Ploy, M-C., Segovia, C., Simonet, P., Smalla, K., Snape, J. & 6 othersTopp, E., van Hengel, A. J., Verner-Jeffreys, D. W., Virta, M. P. J., Wellington, E. M. & Wernersson, A-S., Aug 2018, In : Environment International. 117, p. 132-138 7 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Open Access
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Dichomitus squalens partially tailors its molecular responses to the composition of solid wood

Daly, P., Lopez, S. C., Peng, M., Lancefield, C. S., Purvine, S. O., Kim, Y-M., Zink, E. M., Dohnalkova, A., Singan, V. R., Lipzen, A., Dilworth, D., Wang, M., Ng, V., Robinson, E., Orr, G., Baker, S. E., Bruijnincx, P. C. A., Hilden, K. S., Grigoriev, I. V., Mäkelä, M. R. & 1 othersde Vries, R. P., Nov 2018, In : Environmental Microbiology. 20, 11, p. 4141-4156 16 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Discovery of a Pederin Family Compound in a Nonsymbiotic Bloom-Forming Cyanobacterium

Kust, A., Mares, J., Jokela, J., Urajova, P., Hajek, J., Saurav, K., Voracova, K., Fewer, D. P., Haapaniemi, E., Permi, P., Rehakova, K., Sivonen, K. & Hrouzek, P., May 2018, In : ACS Chemical Biology. 13, 5, p. 1123-1129 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Disruption of the methionine cycle and reduced cellular gluthathione levels underlie potex-potyvirus synergism in Nicotiana benthamiana

De, S., Chavez-Calvillo, G., Wahlsten, M. & Mäkinen, K., Aug 2018, In : Molecular Plant Pathology. 19, 8, p. 1820-1835 16 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Draft genome sequence of the basidiomycete white-rot fungus Phlebia centrifuga

Mäkelä, M. R., Peng, M., Granchi, Z., Chin-A-Woeng, T., Hegi, R., van Pelt, S., Ahrendt, S., Riley, R., Heinaut, M., Henrissat, B., Grigoriev, I., de Vries, R. & Hilden, S. K., Apr 2018, In : Genome Announcements. 6, 14, 2 p., UNSP e01414-17.

Research output: Contribution to journalArticleScientificpeer-review

Dual-stressor selection alters eco-evolutionary dynamics in experimental communities

Hiltunen, T., Cairns, J., Frickel, J., Jalasvuori, M., Laakso, J., Kaitala, V., Kuenzel, S., Karakoc, E. & Becks, L., Dec 2018, In : Nature Ecology & Evolution. 2, 12, p. 1974-1981 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Ecology determines how low antibiotic concentration impacts community composition and horizontal transfer of resistance genes

Cairns, J., Ruokolainen, L., Hultman, J., Tamminen, M., Virta, M. & Hiltunen, T., 19 Apr 2018, In : Communications Biology. 1, 8 p., 35.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Effect of resource availability on evolution of virulence and competition in an environmentally transmitted pathogen

Pulkkinen, K., Pekkala, N., Ashrafi, R., Hamalainen, D. M., Nkembeng, A. N., Lipponen, A., Hiltunen, T., Valkonen, J. K. & Taskinen, J., May 2018, In : FEMS Microbiology Ecology. 94, 5, 12 p., 060.

Research output: Contribution to journalArticleScientificpeer-review