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2018

Efficient extraction method for high quality fungal RNA from complex lignocellulosic substrates

Mäkelä, M. R. & Hilden, S. K., 2018, Fungal Genomics: methods and protocols. de Vries, R. & Tsang, A. (eds.). 2. ed. New York: Humana press, Vol. 1775. p. 69-73 5 p. (Methods in Molecular Biology).

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Erilaiset sienijuurisymbioosit

Vestberg, M., Timonen, S. S. & Lehto, T., 2018, Rihman kiertämät - kasvien ja sienten erottamaton elämä. Vestberg, M. & Timonen, S. (eds.). [Vihtavuori]: [Mauritz Vestberg], p. 13-23 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapterProfessional

High Throughput Method for Analyzing Antibiotic Resistance Genes in Wastewater Treatment Plants.

Muurinen, S. J., Karkman, A. V. & Virta, M. P. J., 2018, Antimicrobial Resistance in Wastewater Treatment Processes. Keen, P. L. & Fugère, R. (eds.). Wiley Blackwell, p. 253-262

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Host-virus interactions on the way from potyvirus replication to translation

De, S., Lohmus, A., Pollari, M. E., Saha, S. & Mäkinen, K. M., 2018, PLANT VIRUSES: DIVERSITY, HOST INTERACTION AND MANAGEMENTS. Gaur, R. K., Khurana, S. M. P. & Yuri, D. (eds.). CRC Press, Taylor & Francis Group

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Pintasienijuuret ja metsätalous

Pennanen, T., Timonen, S. S. & Heinonsalo, E. J., 2018, Rihman kiertämät - kasvien ja sienten erottamaton elämä. Vestberg, M. & Timonen, S. (eds.). [Vihtavuori]: [Mauritz Vestberg], p. 217-230 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapterProfessional

Pintasienijuuri

Timonen, S. S. & Lehto, T., 2018, Rihman kiertämät - kasvien ja sienten erottamaton elämä. Vestberg, M. & Timonen, S. (eds.). [Vihtavuori]: [Mauritz Vestberg], p. 93-104 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapterProfessional

Role of Fungi in Wood Decay

Hildén, K. & Mäkelä, M. R., 26 Apr 2018, Reference Module in Life Sciences. Roitberg, B. D. (ed.). Elsevier, Vol. 2018.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Sienijuuristojen vaikutus maan muuhun mikrobistoon

Timonen, S. S. & Rajala, T., 2018, Rihman kiertämät - kasvien ja sienten erottamaton elämä. Vestberg, M. & Timonen, S. (eds.). [Vihtavuori]: [Mauritz Vestberg], p. 177-188 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapterProfessional

Sienten bioteknologiset sovellukset

Hatakka, A., 2018, Sienten biologia. Timonen, S. & Valkonen, J. (eds.). 2 revised ed. Print Best, Viljandi: Gaudeamus, p. 372-383 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapterGeneral public

2017

Conventional PCR

Dittmann, E., Rantala-Ylinen, A., Sivonen, K., Gagala, I., Mankiewicz-Boczek, J., Gires, S., Ballot, A., Christiansen, G., Kurmayer, R., Ramos, V., Vasconcelos, V. & Saker, M., 2017, Molecular tools for the detection and quantification of toxigenic cyanobacteria. Kurmayer, R., Sivonen, K., Wilmotte, A. & Salmaso, N. (eds.). New York: Wiley, p. 163-203 40 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

DNA (Diagnostic) and cDNA microarray

Rantala-Ylinen, A. H., Sivonen, K. & Wilmotte, A., 2017, Molecular tools for the detection and quantification of toxigenic cyanobacteria. Kurmayer, R., Sivonen, K., Wilmotte, A. & Salamaso, N. (eds.). Wiley, p. 241-243 3 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Introduction

Kurmayer, R., Sivonen, A. K. & Salmaso, N., 2017, Molecular tools for the detection and quantification of toxigenic cyanobacteria. Kurmayer, R., Sivonen, K., Wilmotte, A. & Salmaso, N. (eds.). New York: Wiley, p. 1-18 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Quantitative PCR

Rantala-Ylinen, A. H., Savela, H., Sivonen, K. & Kurmayer, R., 2017, Molecular tools for the detection and quantification of toxigenic cyanobacteria. Kurmayer, R., Sivonen, K., Wilmotte, A. & Salmaso, N. (eds.). Wiley, p. 205-210 5 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

2016

Functions of chikungunya virus nonstructural proteins

Ahola, T. T. & Merits, A., 2016, Chikungunya virus: Advances in biology, pathogenesis, and treatment. Okeoma, C. (ed.). Cham: Springer International Publishing AG, p. 75-98 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientific

Fungal degradation of plant oligo- and polysaccharides

de Vries, R. P., van den Brink, J., Hilden, K. S., Mäkelä, M. R. & Stålbrand, H., 2016, Handbook of Carbohydrate-Modifying Biocatalysts. Grunwald, P. (ed.). 2. ed. Singapore: Pan Stanford Publishing, p. 809-896 87 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Homologous and heterologous expression of basidiomycete genes related to plant biomass degradation

Casado López, S., Sietiö, O-M., Hilden, S. K., de Vries, R. & Mäkelä, M. R., 2016, Gene expression systems in fungi: advancements and applications. Schmoll, M. & Dattenböck, C. (eds.). Springer, p. 119-160 42 p. (Fungal biology).

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Production of feruloyl esterases by Aspergillus species

Mäkelä, M. R., Jimenez Barboza, L. A., de Vries, R. & Hilden, S. K., 2016, Aspergillus and Penicillium in the post-genomic era. de Vries, R., Benoit Gelber, I. & Andersen, M. (eds.). Poole, UK: Caister Academic Press, p. 129-144 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Taxonomy proposal: Create eight new species and three new genera to be assigned in a new family Pleolipoviridae.

Pietilä, M. K., Roine, E. S., Sencilo, A., Oksanen, H. M. & Bamford, D. H., 2016, ICTV Online: International Committee on Taxonomy of Viruses (ICTV) Database. 2015.042a-oB

Research output: Chapter in Book/Report/Conference proceedingChapterProfessional

Taxonomy proposal: One (1) new species in the genus Alphasphaerolipovirus, family Sphaerolipoviridae.

Demina, T., Pietilä, M. K., Svirskaite, J., Ravantti, J. J., Atanasova, N. S., Bamford, D. H. & Oksanen, H. M., 2016, ICTV Online: International Committee on Taxonomy of Viruses (ICTV). International Committee on Taxonomy of Viruses (ICTV), p. 2016.063aB 2016.063aB

Research output: Chapter in Book/Report/Conference proceedingChapterProfessional

2015

Virus Diversity to Explore Various Kinds of Enzyme Nanocarriers

Besong Epse Ndika, J. E., Walter, J. & Mäkinen, K. M., 9 Oct 2015, Enzyme Nanocarriers . Cardinale, D. & Michon, T. (eds.). CRC Press, p. 1-44 44 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

2014

Biopreservation by lactic acid bacteria

Saris, P. E., 2014, Dairy Microbiology and Biochemistry: Recent Developments. Özer, B. H. & Akdemir-Evrendilek, G. (eds.). Boca Raton (FL): CRC Press, Taylor & Francis Group, p. 86-94 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Degradation and Modification of Plant Biomass by Fungi

Mäkelä, M., Hilden, K. & de Vries, R., 2014, Fungal genomics. Nowrousian, M. (ed.). 2nd ed. ed. Heidelberg: Springer-Verlag, p. 175-208 34 p. (The Mycota : A Comprehensive Treatise on Fungi as Experimental Systems for Basic and Applied Research; no. 13).

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Genomics, Lifestyles and Future Prospects of Wood-Decay and Litter-Decomposing Basidiomycota

Lundell, T. K., Mäkelä, M. R., de Vries, R. P. & Hilden, K. S., 2014, Advances in Botanical Research: Fungi. Martin, F. M. (ed.). London: Academic Press, Vol. 70. p. 329-370 42 p. (Advances in Botanical Research; no. 70).

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

2013

Amylaasi ja tärkkelyksen hydrolyysi. Työohje LUMA täydennyskoulutukseen

Lankinen, P., Savin, A. & Timonen, S., 2013, http://www.luma.fi/kemma/2365/taydennyskoulutusten-materiaali.

Research output: Chapter in Book/Report/Conference proceedingChapterGeneral public

Entsyymeillä tehoa pyykinpesuun. Työohje LUMA täydennyskoulutukseen.

Lankinen, P., Savin, A. & Timonen, S., 2013, http://www.luma.fi/kemma/2365/taydennyskoulutusten-materiaali.

Research output: Chapter in Book/Report/Conference proceedingChapterGeneral public

High-throughput yeast-based assays to study receptor-mediated toxicity

Rajasärkkä, J. & Virta, M., 2013, High Throughput Screening Methods in Toxicity Testing. Steinberg, P. (ed.). John Wiley & Sons Ltd. , p. 479-499 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Maidon juoksuttaminen juustoksi ja laktoosin pilkkominen entsyymien avulla

Lankinen, P., Timonen, S. & Savin, A., 2013, http://www.luma.fi/kemma/2365/taydennyskoulutusten-materiaali.

Research output: Chapter in Book/Report/Conference proceedingChapterGeneral public

Puunlahottajat

Lundell, T. & Mäkelä, M., 2013, Sienten biologia. Timonen, S. & Valkonen, J. (eds.). Helsinki: Gaudeamus, 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientific

Uusi kirja sienten biologiasta vaati myös sanastotyötä

Timonen, S., 2013, http://blogs.helsinki.fi/tieteentermipankki/.

Research output: Chapter in Book/Report/Conference proceedingChapterGeneral public

Vetyperoksidin hajottaminen katalaasientsyymillä. Työohje LUMA täydennyskoulutukseen

Lankinen, P., Savin, A. & Timonen, S., 2013, http://www.luma.fi/kemma/2365/taydennyskoulutusten-materiaali.

Research output: Chapter in Book/Report/Conference proceedingChapterGeneral public

2012

Intrinsic disorder in genome-linked viral proteins VPgs of potyviruses

Chroboczek, J., Hebrard, E., Mäkinen, K., Michon, T. & Rantalainen, K., 2012, Flexible Viruses: Structural Disorder in Viral Proteins. Uversky, V. & Longhi, S. (eds.). Hoboken, New Jersey: Wiley, p. 277-312 (Wiley series in protein and peptide science; no. 11).

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

2011

Molecular methods: chip assay and quantitative real-time PCR: in detecting hepatotoxic cyanobacteria

Rantala-Ylinen, A., Sipari, H. & Sivonen, K., 2011, Microbial Toxins: Methods in Molecular Biology. Holst, O. (ed.). New York: Springer Science+Business Media, p. 73-86 (Methods in molecular biology; no. 739).

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

2010

Virusten lisääntyminen

Hyypiä, T., Ahola, T. & Söderlund-Venermo, A. M., 2010, Mikrobiologia : mikrobiologia, immunologia ja infektiosairaudet, kirja 1. Hedman, K., Heikkinen, T., Huovinen, P., Järvinen, A., Meri, S. & Vaara, M. (eds.). Helsinki: Duodecim, Vol. 2010. p. 460-469 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapterProfessional

2009

Cyanobacterial toxins

Sivonen, K., 2009, Encyclopedia of microbiology. E. M. S. (ed.). Amsterdam: Elsevier Scientific Publ. Co, p. 290-307 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

2008

Bioactive compounds produced by cyanobacteria

Sivonen, K. & Börner, T., 2008, The cyanobacteria. E. B. A. H. A. E. F. (ed.). Norfolk: Caister Academic Press, p. 159-197 39 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Cyanobacterial community composition in shallow, eutrophic Lake Tuusulanjärvi studied by microscopy, strain isolation, DGGE and cloning

Rajaniemi-Wacklin, P., Rantala, A., Kuuppo, P., Haukka, K. & Sivonen, K., 2008, Cyanoprokaryota . Chapman, R. L. (ed.). Stuttgart: Schweizerbart, p. 137-157 21 p. (Algological studies; vol. 126:2008).

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Development of cyanobacteria and cyanotoxin standards for research and monitoring

de la Cruz, A. A., Rublee, P., Hungerford, J. M., Zimba, P. V., Wilhelm, S. W., Meriluoto, J. A. O., Echols, K., Meyer, M. T., Stelma, G., Mandeville, R., Lawton, L., Sivonen, K. & Furey, A., 2008, Cyanobacterial harmful algal blooms . Hudnell, K. (ed.). Springer, Vol. 619. p. 469-481 13 p. (Advances in experimental medicine and biology).

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Emerging high throughput analyses of cyanobacterial toxins and toxic cyanobacteria

Sivonen, K., 2008, Cyanobacterial harmful algal blooms. H. K. H. E. (ed.). New York: Springer, p. 539-557 19 p. (Advances in experimental medicine and biology; vol. vol. 619).

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Phosphorylation analysis of plant virus proteins

Mäkinen, K. & Ivanov, K., 2008, Plant Virology Protocols Vol 2: From viral sequence to protein function. Nagy, P. (ed.). Humana Press, 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

2007

Nisin: past, present and future

Takala, T. & Saris, P. E. J., 2007, Research and applications in bacteriocins. E. B. M. A. R. A. O. G. (ed.). Wymondham: Horizon Bioscience cop., p. 181-213 33 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Phage-displayed epitopes as bioreceptors for biosensors

Atias, D., Lobel, L., Virta, M. & Marks, R. S., 2007, Handbook of biosensors and biochips. Marks, R. S., Cullen, D. C., Karube, I., Lowe, C. R. & Weetall, H. H. (eds.). Chichester: John Wiley & Sons Ltd. , Vol. Vol 1. p. 115-131 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Recombinant whole-cell bioreporter systems based on beetle luciferases

Ivask, A., Kahru, A. & Virta, M., 2007, Handbook of biosensors and biochips. Marks, R. S., Cullen, D. C., Karube, I., Lowe, C. R. & Weetall, H. H. (eds.). Chichester: John Wiley & Sons Ltd. , Vol. Vol 1. p. 163-172 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

2004

Infection with potyviruses

Rajamäki, M-L., Mäki-Valkama, T., Mäkinen, K. & Valkonen, J., 2004, Plant-pathogen interactions. Oxford: Blackwell, p. 68-91

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Toxic cyanobacteria research.

Sivonen, K., 2004, In: Inland and coastal waters of Finland. P. Eloranta (Ed.). p. 123-131. Palmenia Publishing, Saarijärvi, Finland..

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

2002

Functions of alphavirus nonstructural proteins in RNA replication

Kaariainen, L. & Ahola, T., 2002, PROGRESS IN NUCLEIC ACID RESEARCH AND MOLECULAR BIOLOGY, VOL 71. ACADEMIC PRESS INC ELSEVIER SCIENCE, p. 187-222 36 p. (PROGRESS IN NUCLEIC ACID RESEARCH AND MOLECULAR BIOLOGY; vol. 71).

Research output: Chapter in Book/Report/Conference proceedingChapterScientific

2000

Freshwater cyanobacterial neurotoxins: ecobiology, chemistry and detection.

Sivonen, K., 2000, In: Seafood and Freshwater Toxins. L. M. Botana (Ed). p. 567-582. Marcel Dekker, Inc., New York, USA.. 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Toxic cyanobacteria.

Sivonen, K., 2000, In: Hydrological and Limnological Aspects of Lake Monitoring. P. Heinonen, G. Ziglio & A. van der Beken (Eds). p. 81-96. John Wiley & Sons Ltd, Chichester, U.K. . 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

1999

Cyanobacterial toxins.

Sivonen, K. & Jones, G., 1999, In: Toxic Cyanobacteria in Water: a Guide to Public Health Significance, Monitoring and Management. I. Chorus & J. Bertram (Eds.). p. 41-111. The World Health Organization. ISBN 0-419-23930-8. E & FN Spon, London, UK.. 70 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

1998

Biodegradation of cyanobacterial hepatotoxins - characterization of toxin degrading bacteria.

Lahti, K., M. R. Niemi, J. Rapala , 1998, In: B. Reguera, J. Blanco, M. L. Fernandez & T. Wyatt (Eds.). Harmful Algae. p. 363-365. Xunta de Galicia and Intergovernmental Oceanographic Commission of UNESCO 1998. Santiago de Compostela, Spain.. 3 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Characterization of procaryotic mRNAs by RT-PCR

Ra, R. & Saris, P. E., 1998, The PCR Technique: RT-PCR. Siebert, P. (ed.). Natick: Eaton Publishing, Vol. 1998. 5 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review