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Publications 1981 2019

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Transcriptomics and proteomics profiling of Anabaena sp. strain 90 under inorganic phosphorus stress.

Teikari, J. E., Österholm, J. U., Kopf, M., Battchikova, N., Wahlsten, M. P-V., Aro, E-M., Hess, W. R. & Sivonen, A. K., 2015, In : Applied and Environmental Microbiology. 81, 15, p. 5212-5222 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Uncovering the abilities of Agaricus bisporus to degrade plant biomass throughout its life cycle

Patyshakuliyeva, A., Post, H., Zhou, M., Jurak, E., Heck, A. J. R., Hilden, S. K., Kabel, M. A., Mäkelä, M. R., Altelaar, M. A. F. & de Vries, R. P., 2015, In : Environmental Microbiology. 17, 8, p. 3098-3109 12 p.

Research output: Contribution to journalArticleScientificpeer-review

2014

4-Methylproline Guided Natural Product Discovery: Co-Occurrence of 4-Hydroxy- and 4-Methylprolines in Nostoweipeptins and Nostopeptolides

Liu, L., Jokela, J., Herfindal, L., Wahlsten, M., Sinkkonen, J., Permi, P., Fewer, D. P., Doskeland, S. O. & Sivonen, K., Nov 2014, In : ACS Chemical Biology. 9, 11, p. 2646-2655 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Abundances of Tetracycline, Sulphonamide and Beta-Lactam Antibiotic Resistance Genes in Conventional Wastewater Treatment Plants (WWTPs) with Different Waste Load

Laht, M., Karkman, A., Voolaid, V., Ritz, C., Tenson, T., Virta, M. & Kisand, V., 1 Aug 2014, In : PLoS One. 9, 8, 8 p., 103705.

Research output: Contribution to journalArticleScientificpeer-review

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Analysis of plant ribosomes with asymmetric flow field-flow fractionation

Pitkanen, L., Tuomainen, P. & Eskelin, K., 2014, In : Analytical and Bioanalytical Chemistry. 406, 6, p. 1629-1637 9 p.

Research output: Contribution to journalArticleScientificpeer-review

An improved and reproducible protocol for the extraction of high quality fungal RNA from plant biomass substrates

Patyshakuliyeva, A., Mäkelä, M., Sietiö, O-M., de Vries, R. & Hilden, K., 2014, In : Fungal Genetics and Biology. 72, p. 201-206 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Atlas of nonribosomal peptide and polyketide biosynthetic pathways reveals common occurrence of nonmodular enzymes

Wang, H., Fewer, D. P., Holm, L., Rouhiainen, L. & Sivonen, K., 2014, In : Proceedings of the National Academy of Sciences of the United States of America. 111, 25, p. 9259-9264 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Biochemical and molecular characterization of an atypical manganese peroxidase of the litter-decomposing fungus Agrocybe praecox

Hilden, K., Mäkelä, M., Steffen, K., Hofrichter, M., Hatakka, A., Archer, D. & Lundell, T., 2014, In : Fungal Genetics and Biology. 2014, 72, p. 131-136 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Carbohydrate-Binding Modules of Fungal Cellulases: Occurrence in Nature, Function, and Relevance in Industrial Biomass Conversion

Varnai, A., Mäkelä, M. R., Djajadi, D. T., Rahikainen, J., Hatakka, A. & Viikari, L., 2014, In : Advances in Applied Microbiology. 88, p. 103-165 63 p.

Research output: Contribution to journalArticleScientificpeer-review

Characterization of ten H2 producing cyanobacteria isolated from the Baltic Sea and Finnish lakes

Leino, H., Shunmugam, S., Isojärvi, J., Oliveira, P., Mulo, P., Saari, L., Battchikova, N., Sivonen, K., Lindblad, P., Aro, E-M. & Allahverdiyeva, Y., 2014, In : International Journal of Hydrogen Energy. 39, 17, p. 8983-8991 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Cyanobacteria from Terrestrial and Marine Sources Contain Apoptogens Able to Overcome Chemoresistance in Acute Myeloid Leukemia Cells

Liu, L., Herfindal, L., Jokela, J., Shishido, T. K., Wahlsten, M., Doskeland, S. O. & Sivonen, K., 2014, In : Marine Drugs. 12, 4, p. 2036-2053 18 p.

Research output: Contribution to journalArticleScientificpeer-review

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Editorial: Plant biomass degradation by fungi

Mäkelä, M. R., Donofrio, N. & de Vries, R., 2014, In : Fungal Genetics and Biology. 72, p. 1 1 p.

Research output: Contribution to journalArticleScientific

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Evolutionary rescue of bacteria via horizontal gene transfer under a lethal beta-lactam concentration

Ojala, V., Mattila, S., Hoikkala, V., Bamford, J. K. H. & Jalasvuori, M., Sep 2014, In : Journal of global antimicrobial resistance. 2, 3, p. 198-200 3 p.

Research output: Contribution to journalArticleScientificpeer-review

Hassallidins, antifungal glycolipopeptides, are widespread among cyanobacteria and are the end-product of a nonribosomal pathway

Vestola, J., Shishido, T. K., Jokela, J., Fewer, D. P., Aitio, O., Permi, P., Wahlsten, M., Wang, H., Rouhiainen, L. & Sivonen, K., 2014, In : Proceedings of the National Academy of Sciences of the United States of America. 111, 18, p. E1909-E1917 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Hydrogen Photoproduction by Immobilized N-2-Fixing Cyanobacteria: Understanding the Role of the Uptake Hydrogenase in the Long-Term Process

Kosourov, S., Leino, H., Murukesan, G., Lynch, F., Sivonen, K., Tsygankov, A. A., Aro, E-M. & Allahverdiyeva, Y., 2014, In : Applied and Environmental Microbiology. 80, 18, p. 5807-5817 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Intracellular coordination of potyviral RNA functions in infection

Makinen, K. & Hafren, A., 26 Mar 2014, In : Frontiers in plant science. 5, 12 p., 110.

Research output: Contribution to journalArticleScientificpeer-review

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In Vivo Targeting of Activated Leukocytes by a beta(2)-Integrin Binding Peptide

Ranta, T-M., Suojanen, J., Penate-Medina, O., Will, O., Tower, R. J., Glueer, C., Kairemo, K., Gahmberg, C. G., Koivunen, E., Sorsa, T., Saris, P. E. J. & Reunanen, J., 2014, In : Molecular diagnosis & therapy. 18, 1, p. 39-44 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Isolation and identification of cyclic lipopeptides from Paenibacillus ehimensis, strain IB-X-b

Aktuganov, G., Jokela, J., Kivelä, H., Khalikova, E., Melentjev, A., Galimzianova, N., Kuzmina, L., Kouvonen, P., Himanen, J-P., Susi, P. & Korpela, T., 2014, In : Journal of Chromatography. B. 973, p. 9-16 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Microbial controls on DMSP degradation and DMS formation in the Sargasso Sea

Vila-Costa, M., Rinta-Kanto, J., Poretsky, R. S., Sun, S., Kiene, R. P. & Moran, M. A., 2014, In : Biogeochemistry. 120, 1-3, p. 295-305

Research output: Contribution to journalArticleScientificpeer-review

Mitochondrial Genome of Phlebia radiata Is the Second Largest (156 kbp) among Fungi and Features Signs of Genome Flexibility and Recent Recombination Events

Salavirta, H., Oksanen, I., Kuuskeri, J., Makela, M., Laine, P., Paulin, L. & Lundell, T., 13 May 2014, In : PLoS One. 9, 5, 15 p., e97141.

Research output: Contribution to journalArticleScientificpeer-review

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Molecular and cellular mechanisms underlying potyvirus infection

Ivanov, K. I., Eskelin, K., Lohmus, A. & Makinen, K., 2014, In : Journal of General Virology. 95, p. 1415-1429 15 p.

Research output: Contribution to journalArticleScientificpeer-review

Monitoring bisphenol A and estrogenic chemicals in thermal paper with yeast-based bioreporter assay

Rajasarkka, J., Koponen, J., Airaksinen, R., Kiviranta, H. & Virta, M., 2014, In : Analytical and Bioanalytical Chemistry. 406, 23, p. 5695-5702 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Nostosins, Trypsin Inhibitors Isolated from the Terrestrial Cyanobacterium Nostoc sp Strain FSN

Liu, L., Jokela, J., Wahlsten, M., Nowruzi, B., Permi, P., Zhang, Y. Z., Xhaard, H., Fewer, D. P. & Sivonen, K., Aug 2014, In : Journal of Natural Products. 77, 8, p. 1784-1790 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Ongelmallinen biosaatavuus

Muurinen, J., 2014, In : Ympäristö ja terveys. 45, 1, p. 70-74 5 p.

Research output: Contribution to journalArticleProfessional

Oxalate-Metabolising Genes of the White-Rot Fungus Dichomitus squalens Are Differentially Induced on Wood and at High Proton Concentration

Makela, M. R., Sietiö, O-M., de Vries, R. P., Timonen, S. & Hilden, K., 5 Feb 2014, In : PLoS One. 9, 2, 11 p., 87959.

Research output: Contribution to journalArticleScientificpeer-review

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Peptides Against Mac-1 Do Not Sufficiently Target Leukemia or Lymphoma In Vivo

Suojanen, J., Reunanen, J., Ranta, T-M., Penate-Medina, O., Salo, T., Saris, P. & Sorsa, T., Feb 2014, In : Anticancer Research. 34, 2, p. 645-650 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Phylum-wide comparative genomics unravel the diversity of secondary metabolism in Cyanobacteria

Calteau, A., Fewer, D. P., Latifi, A., Coursin, T., Laurent, T., Jokela, J., Kerfeld, C. A., Sivonen, K., Piel, J. & Gugger, M., 18 Nov 2014, In : BMC Genomics. 15, 14 p., 977.

Research output: Contribution to journalArticleScientificpeer-review

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Predicting the activity of Heterobasidion parviporum on Norway spruce in warming climate from its respiration rate at different temperatures

Muller, M. M., Sievanen, R., Beuker, E., Meesenburg, H., Kuuskeri, J., Hamberg, L. & Korhonen, K., 2014, In : Forest Pathology. 44, 4, p. 325-336 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Secondary metabolite from Nostoc XPORK14A inhibits photosynthesis and growth of Synechocystis PCC 6803

Shunmugam, S., Jokela, J., Wahlsten, M., Battchikova, N., Rehman, A. U., Vass, I., Karonen, M., Sinkkonen, J., Permi, P., Sivonen, K., Aro, E-M. & Allahverdiyeva, Y., Jun 2014, In : Plant, Cell and Environment. 37, 6, p. 1371-1381 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Structure of the nisin leader peptidase NisP revealing a C-terminal autocleavage activity

Xu, Y., Li, X., Li, R., Li, S., Ni, H., Wang, H., Xu, H., Zhou, W., Saris, P. E., Yang, W., Qiao, M. & Rao, Z., 2014, In : Acta Crystallographica. Section D: Biological Crystallography. 70, 6, p. 1499 - 1505 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Sulphonamide and Trimethoprim Resistance Genes Persist in Sediments at Baltic Sea Aquaculture Farms but Are Not Detected in the Surrounding Environment

Muziasari, W. I., Managaki, S., Pärnänen, K. M. M., Karkman, A., Lyra, C., Tamminen, M., Suzuki, S. & Virta, M., 20 Mar 2014, In : PLoS One. 9, 3, 7 p., 92702.

Research output: Contribution to journalArticleScientificpeer-review

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Teachers' Academics in the department

Heikkilä, I., Lankinen, P. & Timonen, S., 2014, In : EYT-News : Elintarvike- ja ympäristötieteiden laitoksen henkilökuntalehti.

Research output: Contribution to journalArticleGeneral public

The C-Terminal Repeat Domains of nsP3 from the Old World Alphaviruses Bind Directly to G3BP

Panas, M. D., Ahola, T. & McInerney, G. M., 2014, In : Journal of Virology. 88, 10, p. 5888-5893 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Viable Intestinal Passage of a Canine Jejunal Commensal Strain Lactobacillus acidophilus LAB20 in Dogs

Tang, Y. & Saris, P. E. J., 2014, In : Current Microbiology. 69, 4, p. 467-473 7 p.

Research output: Contribution to journalArticleScientificpeer-review

2013

A Combined Impedance and AlphaLISA-Based Approach to Identify Anti-inflammatory and Barrier-Protective Compounds in Human Endothelium

Pflueger, M., Kapuscik, A., Lucas, R., Koppensteiner, A., Katzlinger, M., Jokela, J., Eger, A., Jacobi, N., Wiesner, C., Hofmann, E., Oender, K., Kopecky, J., Schuett, W. & Hundsberger, H., 2013, In : Journal of Biomolecular Screening. 18, 1, p. 67-74 8 p.

Research output: Contribution to journalArticleScientificpeer-review

A General Strategy for Ordered Non-covalent Protein Assembly on Well-defined Nano-scaffolds.

Pille, J., Cardinale, D., Carette, N., De Primo, C., Besong-Ndika, J., Walter, J., Lecoq, H., van Eldijk, M. B., Smits, F. C. M., Schoffelen, S., van Hest, J. C. M., Mäkinen, K. & Michon, T., 2013, In : Biomacromolecules. 14, 12, p. 4351–4359 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Bacteria Contribute to Sediment Nutrient Release and Reflect Progressed Eutrophication-Driven Hypoxia in an Organic-Rich Continental Sea

Sinkko, H-M., Lukkari, K., Sihvonen, L. M., Sivonen, K., Leivuori, M., Rantanen, M., Paulin, L. & Lyra, C., 2013, In : PLoS One. 8, 6, 14 p., e67061.

Research output: Contribution to journalArticleScientificpeer-review

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Bioluminescent Yeast Assay for Detection of Organotin Compounds

Kabiersch, G., Rajasarkka, J., Tuomela, M., Hatakka, A., Virta, M. & Steffen, K., 2013, In : Analytical Chemistry. 85, 12, p. 5740-5745 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Biotests for environmental quality assessment of composted sewage sludge

Kapanen, A., Vikman, M., Rajasarkka, J., Virta, M. & Itavaara, M., 2013, In : Waste Management. 33, 6, p. 1451-1460 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Carbohydrate utilization and metabolism is highly differentiated in Agaricus bisporus

Patyshakuliyeva, A., Jurak, E., Kohler, A., Baker, A., Battaglia, E., de Bruijn, W., Burton, K. S., Challen, M. P., Coutinho, P. M., Eastwood, D. C., Gruben, B. S., Mäkelä, M., Martin, F., Nadal, M., van den Brink, J., Wiebenga, A., Zhou, M., Henrissat, B., Kabel, M., Gruppen, H. & 1 othersde Vries, R. P., 2013, In : BMC Genomics. 14, 14 p., 663.

Research output: Contribution to journalArticleScientificpeer-review

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Cell-mediated killing of Listeria monocytogenes by leucocin C producing Escherichia coli

Liu, S., Takala, T. M., Wan, X., Reunanen, J. & Saris, P. E. J., 2013, In : Microbiological Research. 168, 5, p. 300-304 5 p.

Research output: Contribution to journalArticleScientificpeer-review

Characterization of a Bisphenol A Specific Yeast Bioreporter Utilizing the Bisphenol A-Targeted Receptor

Rajasärkkä, J. & Virta, M., 2013, In : Analytical Chemistry. 85, 21, p. 10067–10074 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Convergent evolution of [D-Leucine(1)] microcystin-LR in taxonomically disparate cyanobacteria

Shishido, T. K., Kaasalainen, U., Fewer, D. P., Rouhiainen, L. A. O., Jokela, J., Wahlsten, M., Fiore, M. F., Yunes, J. S., Rikkinen, J. & Sivonen, K., 19 Apr 2013, In : BMC Evolutionary Biology. 13, 15 p., 86.

Research output: Contribution to journalArticleScientificpeer-review

Distinct roles of carbohydrate esterase family CE16 acetyl esterases and polymer-acting acetyl xylan esterases in xylan deacetylation

Koutaniemi, S., van Gool, M. P., Juvonen, M., Jokela, J., Hinz, S. W., Schols, H. A. & Tenkanen, M., 2013, In : Journal of Biotechnology. 168, 4, p. 684– 692 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Early secretory pathway localization and lack of processing for hepatitis E virus replication protein pORF1.

Perttilä, J., Spuul, P. & Ahola, T., 2013, In : Journal of General Virology. 94, 4, p. 807-816 10 p.

Research output: Contribution to journalArticleScientificpeer-review