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2013

Heterologous expression and structural characterization of two low pH laccases from a biopulping white-rot fungus Physisporinus rivulosus

Hilden, K., Mäkelä, M., Lundell, T., Kuuskeri, J. T., Chernykh, A., Golovleva, L., Archer, D. & Hatakka, A., 2013, In : Applied Microbiology and Biotechnology. 97, 4, p. 1589-1599 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Immobilization of nisin-producer Lactococcus lactis strains to chitin with surface displayed chitin binding domain

Şimşek, Ö., Sabanoğlu, S., Hilmi Çon, A., Karasu, N., Akçelik, M. & Saris, P. E. J., 2013, In : Applied Microbiology and Biotechnology. 97, 10, p. 4577-4587 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing

Shih, P. M., Wu, D., Latifi, A., Axen, S. D., Fewer, D. P., Talla, E., Calteau, A., Cai, F., de Marsac, N. T., Rippka, R., Herdman, M., Sivonen, K., Coursin, T., Laurent, T., Goodwin, L., Nolan, M., Davenport, K. W., Han, C. S., Rubin, E. M., Eisen, J. A. & 3 othersWoyke, T., Gugger, M. & Kerfeld, C. A., 15 Jan 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 3, p. 1053-1058 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Insights into the Physiology and Ecology of the Brackish-Water-Adapted Cyanobacterium Nodularia spumigena CCY9414 Based on a Genome-Transcriptome Analysis

Voss, B., Bolhuis, H., Fewer, D. P., Kopf, M., Moeke, F., Haas, F., El-Shehawy, R., Hayes, P., Bergman, B., Sivonen, K., Dittmann, E., Scanlan, D. J., Hagemann, M., Stal, L. J. & Hess, W. R., 2013, In : PLoS One. 8, 3, 22 p., e60224.

Research output: Contribution to journalArticleScientificpeer-review

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Internet-based CBT intervention for gamblers in Finland: Experiences from the field

Castren, S., Pankakoski, M., Tamminen, M., Lipsanen, J., Ladouceur, R. & Lahti, T., Jun 2013, In : Scandinavian Journal of Psychology. 54, 3, p. 230-235 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Lichen species identity and diversity of cyanobacterial toxins in symbiosis

Kaasalainen, U., Fewer, D. P., Jokela, J., Wahlsten, M., Sivonen, K. & Rikkinen, J., 2013, In : New Phytologist. 198, p. 647-651 5 p.

Research output: Contribution to journalArticleScientificpeer-review

New Structural Variants of Aeruginosin Produced by the Toxic Bloom Forming Cyanobacterium Nodularia spumigena

Fewer, D. P., Jokela, J., Paukku, E., Osterholm, J., Wahlsten, M., Permi, P., Aitio, O., Rouhiainen, L., Gomez-Saez, G. V. & Sivonen, K., 2013, In : PLoS One. 8, 9, 10 p., e73618.

Research output: Contribution to journalArticleScientificpeer-review

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Nodularia spumigena extract induces upregulation of mitochondrial respiratory chain complexes in spinach (Spinacia oleracea L.)

Shunmugam, S., Hinttala, R., Lehtimaki, N., Miettinen, M., Uusimaa, J., Majamaa, K., Sivonen, K., Aro, E-M. & Mulo, P., 2013, In : Acta Physiologiae Plantarum. 35, 3, p. 969-974 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Novel Aeruginosin-865 from Nostoc sp as a Potent Anti-inflammatory Agent

Kapuscik, A., Hrouzek, P., Kuzma, M., Bartova, S., Novak, P., Jokela, J., Pflueger, M., Eger, A., Hundsberger, H. & Kopecky, J., 2013, In : ChemBioChem : a European journal of chemical biology. 14, 17, p. 2329-2337 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Optimization of cultivation conditions to maximize extracellular investments of the Nostoc strains.

Nowruzi, B., Khavari-Nejad, R. A., Sivonen, A. K., Kazemi, B., Najafi, F. & Nejadsattari, T., 1 May 2013, In : Algological studies : international journal of phycological research. 142, p. 63-76 14 p., ESP221014200005.

Research output: Contribution to journalArticleScientificpeer-review

Penicillium subrubescens, a new species efficiently producing inulinase

Mansouri, S., Houbraken, J., Samson, R. A., Frisvad, J. C., Christensen, M., Tuthill, D. E., Koutaniemi, S., Hatakka, A. & Lankinen, P., 2013, In : Antonie van Leeuwenhoek. 103, 6, p. 1343-1357 15 p.

Research output: Contribution to journalArticleScientificpeer-review

Phosphorylation Regulates FOXC2-Mediated Transcription in Lymphatic Endothelial Cells

Ivanov, K. I., Agalarov, Y., Valmu, L., Samuilova, O., Liebl, J., Houhou, N., Maby-El Hajjami, H., Norrmen, C., Jaquet, M., Miura, N., Zangger, N., Yla-Herttuala, S., Delorenzi, M. & Petrova, T. V., Oct 2013, In : Molecular and Cellular Biology. 33, 19, p. 3749-3761 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Proline iminopeptidase PepI overexpressing Lactobacillus casei as an adjunct starter in Edam cheese

Navidghasemizad, S., Takala, T., Alatossava, T. & Saris, P. E., 2013, In : Bioengineered Bugs. 4, 6, p. 408-412 5 p.

Research output: Contribution to journalArticleScientificpeer-review

Ribosomal Protein P0 Promotes Potato Virus A Infection and Functions in Viral Translation Together with VPg and eIF(iso)4E

Hafren, A., Eskelin, K. & Mäkinen, K., Apr 2013, In : Journal of Virology. 87, 8, p. 4302-4312 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Sediment Bacterial Communities Reflect the History of a Sea Basin

Lyra, C., Sinkko, H-M., Rantanen, M., Paulin, L. & Kotilainen, A., 2013, In : PLoS One. 8, 1, 8 p., 54326.

Research output: Contribution to journalArticleScientificpeer-review

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Sienten biologia - suomenkielinen kirja sienten perusbiologiasta

Timonen, S. & Valkonen, J., 2013, In : Luonnon Tutkija. 5, p. 154

Research output: Contribution to journalArticleGeneral public

Structural analysis of linear mixed-linkage glucooligosaccharides by tandem mass spectrometry

Maina, N., Juvonen, M., Domingues, R. M., Virkki, L., Jokela, J. & Tenkanen, M., 2013, In : Food Chemistry. 136, 3-4, p. 1496-1507 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Structure-Function Analysis of Severe Acute Respiratory Syndrome Coronavirus RNA Cap Guanine-N7-Methyltransferase

Chen, Y., Tao, J., Sun, Y., Wu, A., Su, C., Gao, G., Cai, H., Qiu, S., Wu, Y., Ahola, T. & Guo, D., 2013, In : Journal of Virology. 87, 11, p. 6296-6305 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Template RNA Length Determines the Size of Replication Complex Spherules for Semliki Forest Virus

Kallio, K., Hellström, K., Balistreri, G., Spuul, P., Jokitalo, E. & Ahola, T., Aug 2013, In : Journal of Virology. 87, 16, p. 9125-9134 10 p.

Research output: Contribution to journalArticleScientificpeer-review

The genetic basis for o-acetylation of the microcystin toxin in cyanobacteria

Fewer, D. P., Wahlsten, M., Österholm, J., Jokela, J., Rouhiainen, L. A. O., Kaasalainen, U., Rikkinen, J. & Sivonen, K., 25 Jul 2013, In : Chemistry & Biology. 20, 7, p. 861-869 9 p.

Research output: Contribution to journalArticleScientificpeer-review

The HER2 amplicon includes several genes required for the growth and survival of HER2 positive breast cancer cells

Sahlberg, K. K., Hongisto, V., Edgren, H., Makela, R., Hellström, K., Due, E. U., Vollan, H. K. M., Sahlberg, N., Wolf, M., Borresen-Dale, A-L., Perala, M. & Kallioniemi, O., Jun 2013, In : Molecular oncology. 7, 3, p. 392-401 10 p.

Research output: Contribution to journalArticleScientificpeer-review

2012

Abiotic stress responses promote Potato virus A infection in Nicotiana benthamiana

Suntio, T. & Mäkinen, K., 2012, In : Molecular Plant Pathology. 13, 7, p. 775–784 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Anabaenolysins, Novel Cytolytic Lipopeptides from Benthic Anabaena Cyanobacteria

Jokela, J., Oftedal, L., Herfindal, L., Permi, P., Wahlsten, M., Doskeland, S. O. & Sivonen, K., 2012, In : PLoS One. 7, 7, p. - 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Analysis of an Inactive Cyanobactin Biosynthetic Gene Cluster Leads to Discovery of New Natural Products from Strains of the Genus Microcystis

Leikoski, N., Fewer, D. P., Jokela, J., Alakoski, P., Wahlsten, M. & Sivonen, K., 2012, In : PLoS One. 7, 8, p. - 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Antibiootit, ihminen ja ympäristö

Virta, M., 2012, In : Ympäristö ja terveys. 43, 2, p. 58-60 3 p.

Research output: Contribution to journalArticleProfessional

Biogeography of symbiotic and other endophytic bacteria isolated from medicinal Glycyrrhiza species in China

Li, L., Sinkko, H., Montonen, L., Wei, G., Lindstrom, K. & Rasanen, L. A., 2012, In : FEMS Microbiology Ecology. 79, p. 46-68 23 p.

Research output: Contribution to journalArticleScientificpeer-review

Calpains promote alpha 2 beta 1 integrin turnover in nonrecycling integrin pathway

Rintanen, N., Karjalainen, M., Alanko, J., Paavolainen, L., Mäki, A., Nissinen, L., Lehkonen, M., Kallio, K., Cheng, R. H., Upla, P., Ivaska, J. & Marjomäki, V., 1 Feb 2012, In : Molecular Biology of the Cell. 23, 3, p. 448-463 16 p.

Research output: Contribution to journalArticleScientificpeer-review

Comparison of wintertime eukaryotic community from sea ice and open water in the Baltic Sea, based on sequencing of the 18S rRNA gene

Majaneva, M., Rintala, J-M., Piisila, M., Fewer, D. P. & Blomster, J., 2012, In : Polar Biology. 35, 6, p. 875-889 15 p.

Research output: Contribution to journalArticleScientificpeer-review

Dominance of Lactobacillus acidophilus in the facultative jejunal lactobacilli microbiota of fistulated beagles

Tang, Y., Manninen, T. J. K. & Saris, P. E. J., 2012, In : Applied and Environmental Microbiology. 78, 19, p. 7156-7159 4 p.

Research output: Contribution to journalArticleScientificpeer-review

Enterococcus rivorum sp. nov., from water of pristine brooks

Niemi, R. M., Ollinkangas, T., Paulin, L., Švec, P., Vandamme, P., Karkman, A., Kosina, M. & Lindström, K., 2012, In : International Journal of Systematic and Evolutionary Microbiology. 62, Pt 9, p. 2169-2173 5 p.

Research output: Contribution to journalArticleScientificpeer-review

Extended H-2 photoproduction by N-2-fixing cyanobacteria immobilized in thin alginate films

Leino, H., Kosourov, S. N., Saari, L., Sivonen, K., Tsygankov, A. A., Aro, E-M. & Allahverdiyeva, Y., 2012, In : International Journal of Hydrogen Energy. 37, p. 151-161 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Functional regulation of PVBV Nuclear Inclusion protein-a protease activity upon interaction with Viral Protein genome-linked and phosphorylation.

Mathur, C., Jimsheena, V. K., Banerjee, S., Mäkinen, K., Gowda, L. R. & Savithri, H. S., 2012, In : Virology. 422, 2, p. 254-64 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Genome derived insights into the biology of the hepatotoxic bloom forming cyanobacterium Anabaena sp. strain 90

Wang, H., Sivonen, K., Rouhiainen, L. A. O., Fewer, D. P., Lyra, C., Rantala-Ylinen, A., Vestola, J., Jokela, J., Rantasärkkä, K., Li, Z. & Liu, B., 2012, In : BMC Genomics. 13, Article No.613, 17 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Impact of copper and zinc on the growth of saprotrophic fungi and extracellular enzyme activities.

Hartikainen, E. S., Lankinen, P., Rajasärkkä, J., Koponen, H., Virta, M., Hatakka, A. & Kähkönen, M., 2012, In : Boreal Environment Research. 17, p. 210-218

Research output: Contribution to journalArticleScientificpeer-review

Impact of copper and zinc on the growth of saprotrophic fungi and the production of extracellular enzymes

Hartikainen, E. S., Lankinen, P., Rajasärkkä, J., Koponen, H., Virta, M., Hatakka, A. & Kähkönen, M. A., 29 Jun 2012, In : Boreal Environment Research. 17, 3-4, p. 210-218 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Large scale analysis of plasmids relationships through gene sharing networks.

Tamminen, M., Virta, M., Fani, R. & Fondi, M., 2012, In : Molecular Biology and Evolution. 29, 4, p. 1225-1240

Research output: Contribution to journalArticleScientificpeer-review

Mediuutiset: K. Sivonen haastattelu, toim.Erpo Pakkala: Sinilevistä syntyy lääkkeitä

Sivonen, K., 1 Jun 2012, In : Mediuutiset. 2012 year, 22-23, p. Front page +, 8-9 2 p.

Research output: Contribution to journalArticleGeneral public

Obatoclax, Saliphenylhalamide, and Gemcitabine Inhibit Influenza A Virus Infection

Denisova, O. V., Kakkola, L., Feng, L., Stenman, J., Nagaraj, A., Lampe, J., Yadav, B., Aittokallio, T., Kaukinen, P., Ahola, T., Kuivanen, S., Vapalahti, O., Kantele, A., Tynell, J., Julkunen, I., Kallio-Kokko, H., Paavilainen, H., Hukkanen, V., Elliott, R. M., De Brabander, J. K. & 2 othersSaelens, X. & Kainov, D. E., 12 Oct 2012, In : Journal of Biological Chemistry. 287, 42, p. 35324-35332 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Sesbanian mosaic virus (SeMV) infectious clone: possible mechanism of 3' and 5' end repair and role of polyprotein processing in viral replication

Kunduri, G., Mäkinen, K. & Savithri, HS., 15 Feb 2012, In : PLoS One. 7, 2, p. e31190 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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The lipopeptide toxins anabaenolysin A and B target biological membranes in a cholesterol-dependent manner

Oftedal, L., Myhren, L., Jokela, J., Gausdal, G., Sivonen, K., Doskeland, S. O. & Herfindal, L., 2012, In : Biochimica et Biophysica Acta. Biomembranes. 1818, 12, p. 3000-3009 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Ympäristötieteellisen seuran kynästä: Bisfenoli A - jokapäiväinen kemikaalimme

Rajasärkkä, J., 20 Feb 2012, In : Ympäristö ja terveys. 2012, 1, p. 78-81 4 p.

Research output: Contribution to journalArticleGeneral public

2011

Analysis of sulfur-related transcription by Roseobacter communities using a taxon-specific functional gene microarray

Rinta-Kanto, J. M., Buergmann, H., Gifford, S. M., Sun, S., Sharma, S., del Valle, D. A., Kiene, R. P. & Moran, M. A., 2011, In : Environmental Microbiology. 13, p. 453-467 15 p.

Research output: Contribution to journalArticleScientificpeer-review

Analytical strategies for improving the robustness and reproducibility of bioluminescent microbial bioreporters

Roda, A., Roda, B., Cevenini, L., Michelini, E., Mezzanotte, L., Reschiglian, P., Hakkila, K. & Virta, M., 2011, In : Analytical and Bioanalytical Chemistry. 401, p. 201-211 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Anatoxin-a Synthetase Gene Cluster of the Cyanobacterium Anabaena sp Strain 37 and Molecular Methods To Detect Potential Producers

Rantala-Ylinen, A., Känä, S., Wang, H., Rouhiainen, L., Wahlsten, M., Rizzi, E., Berg, K., Gugger, M. & Sivonen, K., 2011, In : Applied and Environmental Microbiology. 77, p. 7271-7278 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Assembly of Alphavirus Replication Complexes from RNA and Protein Components in a Novel trans-Replication System in Mammalian Cells

Spuul, P., Balistreri, G., Hellström, K., Golubtsov, A. V., Jokitalo, E. & Ahola, T., 2011, In : Journal of Virology. 85, 10, p. 4739-4751 13 p.

Research output: Contribution to journalArticleScientificpeer-review

ATPase activity of a yeast secretory glycoprotein allows ER exit during inactivation of COPII components Sec24p and Sec13p

Suntio, T., Shiryaev, S. A. & Makarow, M., 2011, In : Yeast : a forum for yeast researchers. 28, 6, p. 453-465 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Bacterioplankton community composition in 67 Finnish lakes differs according to trophic status

Kolmonen, E. K., Haukka, K., Rantala-Ylinen, A., Rajaniemi-Wacklin, P., Lepistö, L. & Sivonen, K., 2011, In : Aquatic Microbial Ecology. 62, 3, p. 241-250 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Biochemical and structural insights into the mechanisms of SARS coronavirus RNA ribose 2'-O-methylation by nsp16/nsp10 protein complex

Chen, Y., Su, C., Ke, M., Jin, X., Xu, L., Zhang, Z., Wu, A., Sun, Y., Yang, Z., Tein, P., Ahola, T., Liang, Y., Liu, X. & Guo, D., 2011, In : PLoS Pathogens. 7, 10, p. e1002294 14 p.

Research output: Contribution to journalArticleScientificpeer-review