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2011

Cd-Specific Mutants of Mercury-Sensing Regulatory Protein MerR, Generated by Directed Evolution

Hakkila, K. M., Nikander, P. A., Junttila, S. M., Lamminmaki, U. J. & Virta, M. P., 2011, In : Applied and Environmental Microbiology. 77, p. 6215-6224 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Cell immobilization studies using cellulose-binding domain fused to PrtP in Lactococcus lactis

Liu, S., Kylä-Nikkilä, K. & Saris, P. E., 2011, In : Bioengineered Bugs. 2, 3, p. 160-162 3 p.

Research output: Contribution to journalArticleScientificpeer-review

Cold Temperature Decreases Bacterial Species Richness in Nitrogen-Removing Bioreactors Treating Inorganic Mine Waters

Karkman, A., Mattila, K., Tamminen, M. & Virta, M., 2011, In : Biotechnology and Bioengineering (Print). 108, p. 2876-2883 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Developing a Compound-Specific Receptor for Bisphenol A by Directed Evolution of Human Estrogen Receptor alpha

Rajasarkka, J., Hakkila, K. & Virta, M., 2011, In : Biotechnology and Bioengineering (Print). 108, p. 2526-2534 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Differences in bacterial community composition in Baltic Sea sediment in response to fish farming

Tamminen, M., Karkman, A., Corander, J., Paulin, L. G. & Virta, M., 2011, In : Aquaculture. 313, p. 15-23

Research output: Contribution to journalArticleScientificpeer-review

Echovirus 1 infection depends on biogenesis of novel multivesicular bodies

Karjalainen, M., Rintanen, N., Lehkonen, M., Kallio, K., Mäki, A., Hellström, K., Siljamäki, V., Upla, P. & Marjomäki, V., 2011, In : Cellular Microbiology. 13, 12, p. 1975-1995 21 p.

Research output: Contribution to journalArticleScientificpeer-review

Effects of polarization in the presence and absence of biocides on bioflms in a simulated paper machine water

Peltola, M., Kuosmanen, T., Sinkko, H-M., Vesalainen, N., Pulliainen, M., Korhonen, P., Partti-Pellinen, K., Räsänen, J., Rintala, J., Kolari, M., Rita, H. & Salkinoja-Salonen, M. S., 2011, In : Journal of Industrial Microbiology and Biotechnology. 38, p. 1719-1727 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Fate of bisphenol A during treatment with the litter-decomposing fungi Stropharia rugosoannulata and Stropharia coronilla

Kabiersch, G., Rajasarkka, J., Ullrich, R., Tuomela, M., Hofrichter, M., Virta, M., Hatakka, A. & Steffen, K., 2011, In : Chemosphere. 83, p. 226-232 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Fish farming affects the abundance and diversity of the mercury resistance gene merA in marine sediments

Pitkänen, L., Tamminen, M., Hynninen, A., Karkman, A., Corander, J., Kotilainen, A. & Virta, M., 2011, In : Microbes & Environments. 26, 3, p. 205-211

Research output: Contribution to journalArticleScientificpeer-review

Galega orientalis is more diverse than Galega officinalis in Caucasus – whole-genome AFLP analysis and phylogenetics of symbiosis-related genes

Österman, J., Chizhevskaja, E., Andronov, E., Fewer, D. P., Terefework, Z., Roumiantseva, M., Onichtchouk, O., Dresler-Nurmi, A., Simarov, B., Dzyubenko, N. & Lindström, K., 27 Oct 2011, In : Molecular Ecology. 20, p. 4808-4821 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Genome mining demonstrates the widespread occurrence of gene clusters encoding bacteriocins in cyanobacteria

Wang, H., Fewer, D. P. & Sivonen, K., 20 Jul 2011, In : PLoS One. 6, p. e22384 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Inhibitors of Alphavirus Entry and Replication Identified with a Stable Chikungunya Replicon Cell Line and Virus-Based Assays

Pohjala, L., Utt, A., Varjak, M., Lulla, A., Merits, A., Ahola, T. & Tammela, P., 19 Dec 2011, In : PLoS One. 6, 12, p. e28923 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Liposomal Tumor Targeting in Drug Delivery Utilizing MMP-2- and MMP-9-Binding Ligands

Penate Medina, O., Haikola, M., Tahtinen, M., Simpura, I., Kaukinen, S., Valtanen, H., Zhu, Y., Kuosmanen, S., Wei, C., Reunanen, J., Nurminen, T., Saris, P. E., Smith-Jones, P., Bradbury, M., Larson, S. & Kairemo, K., 2011, In : Journal of Drug Delivery. 2011, 160515, 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Luminescent bacteria-based sensing method for methylmercury specific determination

Rantala, A., Utriainen, M., Kaushik, N., Virta, M., Valimaa, A-L. & Karp, M., 2011, In : Analytical and Bioanalytical Chemistry. 400, p. 1041-1049 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Miniaturisation of the luminescent yeast cell based assay for Estrogen receptor ligands

Rajasärkkä, J. & Virta, M., 2011, In : Combinatorial Chemistry & High Throughput Screening. 14, 1, p. 47-54 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Miniaturization of a Panel of High Throughput Yeast-Cell-Based Nuclear Receptor Assays in 384-and 1536-Well Microplates

Rajasärkkä, J. & Virta, M., Jan 2011, In : Combinatorial Chemistry & High Throughput Screening. 14, 1, p. 47-54 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Nisin-selectable food-grade secretion vector for Lactococcus lactis

Li, R., Takala, T., Qiao, M., Xu, H. & Saris, P. E., 2011, In : Biotechnology Letters. 33, 4, p. 797-803 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Nodularin uptake and induction of oxidative stress in spinach (Spinachia oleracea)

Lehtimäki, N., Shunmugam, S., Jokela, J., Wahlsten, M., Carmel, D., Keränen, M., Sivonen, K., Aro, E-M., Allahverdiyeva, Y. & Mulo, P., 2011, In : Journal of Plant Physiology. 168, 6, p. 594-600 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Non-autonomous transposable elements associated with inactivation of microcystin gene clusters in strains of the genus Anabaena isolated from the Baltic Sea.

Fewer, D. P., Halinen, K., Sipari, H., Bernardova, K., Mänttäri, M., Eronen, E. & Sivonen, K., 2011, In : Environmental microbiology reports. 3, 2, p. 189–194 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Nostocyclopeptide-M1: A potent, nontoxic inhibitor of the hepatocyte drug trasporters OATB 1B3 and OATP1B1.

Herfindal, L., Myhren, L., Kleppe, R., Krakstad, C., Selheim, F., Jokela, J., Sivonen, K. & Doeskeland, S. O., 2011, In : Molecular Pharmaceutics. 8, 2, p. 360-367 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Phosphorus chemistry and bacterial community composition interact in brackish sediments receiving agricultural discharges

Sinkko, H-M., Lukkari, K., Jama, A., Sihvonen, L., Sivonen, K., Leivuori, M., Rantanen, M., Paulin, L. & Lyra, C., 29 Jun 2011, In : PLoS One. 6, 6, 13 p., e21555.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Potyviral VPg Enhances Viral RNA Translation and Inhibits Reporter mRNA Translation In Planta

Eskelin, K., Hafren, A., Rantalainen, K. & Mäkinen, K., 2011, In : Journal of Virology. 85, p. 9210-9221

Research output: Contribution to journalArticleScientificpeer-review

Selective Gelatinase Inhibitor Peptide Is Effective in Targeting Tongue Carcinoma Cell Tumors In Vivo

Suojanen, J., Vilen, S-T., Nyberg, P., Heikkila, P., Penate-Medina, O., Saris, P. E. J., Hagstrom, J., Ranta, T-M., Salo, T., Sorsa, T. & Reunanen, J., 2011, In : Anticancer Research. 31, 11, p. 3659-3664 6 p.

Research output: Contribution to journalArticleScientificpeer-review

SH3 Domain-Mediated Recruitment of Host Cell Amphiphysins by Alphavirus nsP3 Promotes Viral RNA Replication

Neuvonen, M., Kazlauskas, A., Martikainen, M., Hinkkanen, A., Ahola, T. & Saksela, K., 2011, In : PLoS Pathogens. 7, 11, p. e1002383 15 p.

Research output: Contribution to journalArticleScientificpeer-review

Speciation in Red Algae: Members of the Ceramiales as Model Organisms

Maggs, C. A., Fletcher, H. L., Fewer, D., Loade, L., Mineur, F. & Johnson, M. P., 2011, In : Integrative and Comparative Biology. 51, 3, p. 492-504 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Structural flexibility allows the functional diversity of potyviral genome -linked protein VPg

Rantalainen, K., Eskelin, K., Tompa, P. & Mäkinen, K., Mar 2011, In : Journal of Virology. 85, 5, p. 2449-2457 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Tetracycline Resistance Genes Persist at Aquaculture Farms in the Absence of Selection Pressure

Tamminen, M., Karkman, A., Lohmus, A., Muziasari, W. I., Takasu, H., Wada, S., Suzuki, S. & Virta, M., 2011, In : Environmental Science & Technology. 45, 2, p. 386–391 6 p.

Research output: Contribution to journalArticleScientificpeer-review

The effect of nickel contamination on the growth of litter-decomposing fungi, extracellular enzyme activities and toxicity in soil

Lankinen, P., Kähkönen, M., Rajasärkkä, J., Virta, M. & Hatakka, A., 2011, In : Boreal Environment Research. 16, p. 229-239

Research output: Contribution to journalArticleScientificpeer-review

Use of Microcalorimetry To Determine the Costs and Benefits to Pseudomonas putida Strain KT2440 of Harboring Cadmium Efflux Genes

Gibbons, S. M., Feris, K., McGuirl, M. A., Morales, S. E., Hynninen, A., Ramsey, P. W. & Gannon, J. E., 2011, In : Applied and Environmental Microbiology. 77, 1, p. 108-113 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Virulence genes of Aeromonas isolates, bacterial endotoxins and cyanobacterial toxins from recreational water samples associated with human health symptoms

Berg, K. A., Lyra, C., Niemi, R. M., Heens, B., Hoppu, K., Erkomaa, K., Sivonen, K. & Rapala, J., 2011, In : Journal of Water and Health. 9, 4, p. 670-679 10 p.

Research output: Contribution to journalArticleScientificpeer-review

2010

A chimera of green fluorescent protein with gelatinase binding and tumor targeting peptide

Reunanen, J., Ranta, T-M., Penate-Medina, O., Suojanen, J., Sorsa, T., Salo, T., Koivunen, E. & Saris, P. E. J., 2010, In : Protein Expression and Purification. 72, p. 234-237 4 p.

Research output: Contribution to journalArticleScientificpeer-review

A novel cyanobacterial nostocyclopeptide is a potent antitoxin against microcystins.

Jokela, J., Herfindal, L., Wahlsten, M., Permi, P., Selheim, F., Vasconcelos, V., Døskeland, S. O. & Sivonen, K., 23 Jun 2010, In : ChemBioChem : a European journal of chemical biology. 11, 11, p. 1594-1599 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Development of a Chip Assay and Quantitative PCR for Detecting Microcystin Synthetase E Gene Expression

Sipari, H., Rantala-Ylinen, A., Jokela, J., Oksanen, I. & Sivonen, K., 2010, In : Applied and Environmental Microbiology. 76, 12, p. 3797-3805 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Highly Diverse Cyanobactins in Strains of the Genus Anabaena

Leikoski, N., Fewer, D. P., Jokela, J., Wahlsten, M., Rouhiainen, L. & Sivonen, K., 2010, In : Applied and Environmental Microbiology. 76, 3, p. 701-709 9 p.

Research output: Contribution to journalArticleScientificpeer-review

HSP70 and Its Cochaperone CPIP Promote Potyvirus Infection in Nicotiana benthamiana by Regulating Viral Coat Protein Functions

Hafren, A., Hofius, D., Rönnholm, G., Sonnewald, U. & Mäkinen, K., 2010, In : Plant Cell. 22, p. 523-535 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Immobilization of Lactococcus lactis to cellulosic material by cellulose-binding domain of Cellvibrio japonicus

Kyla-Nikkila, K., Alakuijala, U. & Saris, P. E. J., 2010, In : Applied Microbiology and Biotechnology. 109, p. 1274-1283 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Improving the sensitivity of bacterial bioreporters for heavy metals

Hynninen, A., Tonismann, K. & Virta, M., 2010, In : Bioengineered Bugs. 1, 2, p. 132-138 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Loss of IrpT Function in Lactococcus lactis subsp lactis N8 Results in Increased Nisin Resistance

Xuanyuan, Z., Wu, Z., Li, R., Jiang, D., Su, J., Xu, H., Bai, Y., Zhang, X., Saris, P. E. J. & Qiao, M., 2010, In : Current Microbiology. 61, p. 329-334 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Marine benthic cyanobacteria contain apoptosis-inducing activity synergizing with daunorubicin to kill leukemia cells, but not cardiomyocytes.

Oftedal, L., Selheim, F., Wahlsten, M., Sivonen, K., Doeskeland, S. O. & Herfindal, L., 2010, In : Marine Drugs. 8, p. 2659-2672 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Phosphatidylinositol 3-Kinase-, Actin-, and Microtubule-Dependent Transport of Semliki Forest Virus Replication Complexes from the Plasma Membrane to Modified Lysosomes

Spuul, P., Balistreri, G., Kääriäinen, L. J. & Ahola, T., 2010, In : Journal of Virology. 84, 15, p. 7543-7557 15 p.

Research output: Contribution to journalArticleScientificpeer-review

Purification of the mitochondrial calcium uniporter from the beef heart and characterization of the properties of the preparation.

Gritsenko, E. N., Kutyshenko, V. P., Saris, N. E., Wahlsten, M., Jokela, J. & Mironova, G. D., 2010, In : Biophysics. 55, 5, p. 718-722 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Renilla luciferase-based quantitation of Potato virus A infection initiated with Agrobacterium infiltration of N. benthamiana leaves

Eskelin, K., Suntio, T., Hyvärinen, S., Hafren, A. & Mäkinen, K., 2010, In : Journal of Virological Methods. 164, 1-2, p. 101-110 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Screening for biohydrogen production by cyanobacteria isolated from the Baltic Sea and Finnish lakes

Allahverdiyeva, Y., Leino, H., Saari, L., Fewer, D. P., Shunmugam, S., Sivonen, K. & Aro, E-M., 2010, In : International Journal of Hydrogen Energy. 35, 3, p. 1117-1127 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Single gene-based distinction of individual microbial genomes from a mixed population of microbial cells

Tamminen, M. & Virta, M., 2010, In : Nature Precedings. 13.8.2010

Research output: Contribution to journalArticleScientific

Two Alternative Starter Modules for the Non-Ribosomal Biosynthesis of Specific Anabaenopeptin Variants in Anabaena (Cyanobacteria)

Rouhiainen, L., Jokela, J., Fewer, D. P., Urmann, M. & Sivonen, K., 2010, In : Chemistry & Biology. 17, 3, p. 265-273 9 p.

Research output: Contribution to journalArticleScientificpeer-review

White wines as possible meat marinade ingredients possess antimicrobial potential against Campylobacter

Isohanni, P., Alter, T., Saris, P. E. & Lyhs, U., 2010, In : Poultry Science. 89, 12, p. 2704-2710 7 p.

Research output: Contribution to journalArticleScientificpeer-review

2009

Acyloxymethyl esterification of Nodularin-R and Microcystin-LA produces inactive protoxins that become reactivated and produce apoptosis inside intact cells

Herfindal, L., Kasprzykowski, F., Schwede, F., ankiewicz, L., Fladmark, K. E., ukomska, J., Wahlsten, M., Sivonen, K., Grzonka, Z., Jastorff, B. & Døskeland, S. O., 2009, In : Journal of Medicinal Chemistry. 52, 18, p. 5758-5762 5 p.

Research output: Contribution to journalArticleScientificpeer-review