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Publications 1981 2019

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2009

Betulin-derived compounds as inhibitors of alphavirus replication

Pohjala, L., Alakurtti, S., Ahola, T., Yli-Kauhaluoma, J. & Tammela, P., 2009, In : Journal of Natural Products. 72, 11, p. 1917-1926 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Continuous nisin production with bioengineered Lactococcus lactis strains

Simsek, O., Akkoc, N., Con, A. H., Ozcelik, F., Saris, P. E. J. & Akcelik, M., 2009, In : Journal of Industrial Microbiology and Biotechnology. 36, 6, p. 863-871 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Culture-independent evidence for the persistent presence and genetic diversity of microcystin-producing Anabaena (Cyanobacteria) in the Gulf of Finland

Fewer, D. P., Köykkä, M., Halinen, K., Jokela, J., Lyra, C. & Sivonen, K., 2009, In : Environmental Microbiology. 11, 4, p. 855-866 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Cycle changing the medium results in increased nisin productivity per cell in Lactococcus lactis

Simsek, O. & Saris, P. E. J., 2009, In : Biotechnology Letters. 31, 3, p. 415-421 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Development of a denaturation/renaturation-based production process for ferritin nanoparticles

Jääskeläinen, A., Soukka, T., Lamminmäki, U., Korpimäki, T. & Virta, M., 2009, In : Biotechnology and Bioengineering (Print). 102, 4, p. 1012-1024 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Differential activities of cellular and viral macro domain proteins in binding of ADP-ribose metabolites

Neuvonen, K. M. & Ahola, T., 2009, In : Journal of Molecular Biology. 385, 1, p. 212-225 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Discovering protein kinase C active plants growing in Finland utilizing automated bioassay combined to LC/MS

Galkin, A., Jokela, J., Wahlsten, M., Tammela, P., Sivonen, K. & Vuorela, P., 2009, In : Natural Product Communications. 4, 1, p. 139-142 4 p.

Research output: Contribution to journalArticleScientificpeer-review

Functional screen reveals SARS coronavirus nonstructural protein nsp14 as a novel cap N7 methyltransferase

Chen, Y., Cai, H., Pan, J. A., Xiang, N., Tien, P., Ahola, T. & Guo, D., 2009, In : Proceedings of the National Academy of Sciences of the United States of America. 106, 9, p. 3484-3489 6 p.

Research output: Contribution to journalArticleScientificpeer-review

High diversity of cultivable heterotrophic bacteria in association with cyanobacterial water blooms

Berg, K., Lyra, C., Sivonen, K., Paulin, L., Suomalainen, S., Tuomi, P. & Rapala, J., 2009, In : ISME Journal. 3, 3, p. 314-325 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Identifying the Source of Unknown Microcystin Genes and Predicting Microcystin Variants by Comparing Genes within Uncultured Cyanobacterial Cells

Allender, C. J., LeCleir, G. R., Rinta-Kanto, J. M., Small, R. L., Satchwell, M. F., Boyer, G. L. & Wilhelm, S. W., 2009, In : Applied and Environmental Microbiology. 75, p. 3598-3604 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Influence of growth conditions on the nisin production of bioengineered Lactococcus lactis strains

Simsek, O., Con, A. H., Akkoc, N., Saris, P. E. J. & Akcelik, M., 2009, In : Journal of Industrial Microbiology and Biotechnology. 36, 4, p. 481-490 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Inhibition of toxicogenic Bacillus licheniformis 553/1 in Nigerian Wara soft cheese by nisin-producing Lactococcus lactis LAC309

Raheem, D. & Saris, P. E. J., 2009, In : International Journal of Food Science and Technology. 44, 2, p. 246-250 5 p.

Research output: Contribution to journalArticleScientificpeer-review

Interaction of a potyviral VPg with anionic phospholipid vesicles

Rantalainen, K., Christensen, P. A., Hafren, A., Otzen, D. E., Kalkkinen, N. & Mäkinen, K., 2009, In : Virology. 395, 1, p. 114-120 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Isolation of lactic acid bacteria from Lighvan cheese, a semihard cheese made from raw sheep milk in Iran

Navidghasemizad, S., Hesari, J., Saris, P. & Nahaei, M. R., 2009, In : International Journal of Dairy Technology Online. 62, 2, p. 260-264 5 p.

Research output: Contribution to journalArticleScientificpeer-review

Isolation of sensitive nisin-sensing GFP[sub uv] bioassay Lactococcus lactis strains using FACS

Abbas Hilmi, H. T., Hakkila, K. M. & Saris, P. E., 2009, In : Biotechnology Letters. 31, 1, p. 119-122 4 p.

Research output: Contribution to journalArticleScientificpeer-review

Lentiviral vector-derived shRNAs confer enhanced suppression of Semliki forest virus replication in BHK-21 cells compared to shRNAs expressed from plasmids

Zhang, K., Chen, Y., Pan, J., Ahola, T. & Guo, D., Apr 2009, In : Biotechnology Letters. 31, 4, p. 501-508 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Microcystin Production in the Tripartite Cyanolichen Peltigera leucophlebia

Kaasalainen, U., Jokela, J., Fewer, D. P., Sivonen, K. & Rikkinen, J., 2009, In : Molecular Plant - Microbe Interactions. 22, 6, p. 695-702 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Mu transposition complex mutagenesis in Lactococcus lactis: identification of genes affecting nisin production

Wu, Z., Xuanyuan, Z., Li, R., Jiang, D., Li, C., Xu, H., Bai, Y., Zhang, X., Turakainen, H., Saris, P. E. J., Savilahti, H. & Qiao, M., 2009, In : Journal of Applied Microbiology. 106, 1, p. 41-48 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Production of a recombinant full-length collagen type I -1 and of a 45-kDa collagen type I -1 fragment in barley seeds

Eskelin, K., Ritala, A., Suntio, T., Blumer, S., Holkeri, H., Wahlström, E. H., Baez, J., Mäkinen, K. & Nuutila, A. M., 2009, In : Plant biotechnology journal. 7, 7, p. 657-672 16 p.

Research output: Contribution to journalArticleScientificpeer-review

Production of a recombinant full-length collagen type I alpha-1 and of a 45-kDa collagen type I alpha-1 fragment in barley seeds.

Eskelin K, Ritala A, Suntio T, Blumer S, Holkeri H, Wahlström EH, Baez J, Mäkinen K, Maria NA, 2009, In : Plant biotechnology journal.

Research output: Contribution to journalArticleScientificpeer-review

Protein lysate microarray analysis to identify microRNAs regulating estrogen receptor signaling in breast cancer cell lines

Leivonen, S-K., Mäkelä, R., Ostling, P., Kohonen, P., Haapa-Paananen, S., Kleivi, K., Enerly, E., Aakula, A., Hellström, K., Sahlberg, N., Kristensen, V. N., Borresen-Dale, A-L., Saviranta, P., Perälä, M. & Kallioniemi, O., 2009, In : Oncogene. 28, 44, p. 3926-3936 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Survival of nisin activity in intestinal environment

Reunanen, J. & Saris, P. E. J., 2009, In : Biotechnology Letters. 31, 8, p. 1229-1232 4 p.

Research output: Contribution to journalArticleScientificpeer-review

The crystal structures of chikungunya and venezuelan equine encephalitis virus nsP3 macro domains define a conserved adenosine binding pocket

Malet, H., Coutard, B., Jamal, S., Dutartre, H., Papageorgiou, N., Neuvonen, K. M., Ahola, T., Forrester, N., Gould, E. A., Lafitte, D., Ferron, F., Lescar, J., Gorbalenya, A. E., de Lamballerie, X. & Canard, B., 2009, In : Journal of Virology. 83, 13, p. 6534-6545 12 p.

Research output: Contribution to journalArticleScientificpeer-review

The non-ribosomal assembly and frequent occurrence of the protease inhibitors spumigins in the bloom-forming cyanobacterium Nodularia spumigena

Fewer, D. P., Jokela, J., Rouhiainen, L., Wahlsten, M., Koskenniemi, K., Stal, L. J. & Sivonen, K., 2009, In : Molecular Microbiology. 73, 5, p. 924-937 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Widespread occurrence and lateral transfer of the cyanobactin biosynthesis gene cluster in cyanobacteria

Leikoski, N., Fewer, D. P. & Sivonen, K., 2009, In : Applied and Environmental Microbiology. 75, 3, p. 853-857 5 p.

Research output: Contribution to journalArticleScientificpeer-review

2008

A luciferase-based screening method for inhibitors of alphavirus replication applied to nucleoside analogues

Pohjala, L., Barai, V., Azhayev, A., Lapinjoki, S. & Ahola, T., 2008, In : Antiviral Research. 78, 3, p. 215-222 8 p.

Research output: Contribution to journalArticleScientificpeer-review

A sensitive recombinant cell-based bioluminescent assay for detection of androgen-like compounds

Michelini, E., Cevenini, L., Mezzanotte, L., Leskinen, P., Virta, M., Karp, M. & Roda, A., 2008, In : Nature Protocols. 3, 12, p. 1895 - 1902

Research output: Contribution to journalArticleScientificpeer-review

Atomic force microscopy of potato virus A

Obraztsova, E. A., Kalinina, N. O., Taliansky, M. E., Gabrenaite-Verkhovskaya, R., Mäkinen, K. & Yaminsky, I. V., 2008, In : Russian Academy of Sciences. Colloid Journal. 70, p. 199-201 3 p.

Research output: Contribution to journalArticleScientificpeer-review

Biologically produced bifunctional recombinant protein nanoparticles for immunoassays

Jääskelainen, A., Harinen, R-R., Soukka, T., Lamminmäki, U., Korpimäki, T. & Virta, M., 2008, In : Analytical Chemistry. 80, 3, p. 583-587 5 p.

Research output: Contribution to journalArticleScientificpeer-review

Cylindrical inclusion protein of potato virus A is associated with a subpopulation of particles isolated from infected plants

Gabrenaite-Verhovskaya, R., Andreev, I. A., Kalinina, N. O., Torrance, L., Taliansky, M. E. & Mäkinen, K., 2008, In : Journal of General Virology. 89, 3, p. 829-838 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Detecting AhR ligands in sedimets using bioluminescent reporter yeast

Leskinen, P., Hilscherova, K., Sidlova, T., Kiviranta, H., Pessala, P., Salo, S., Verta, M. & Virta, M., 2008, In : Biosensors & Bioelectronics. 23, 12, p. 1850-1855 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Evidence for positive selection acting on microcystin synthetase adenylation domains in three cyanobacterial genera

Tooming-Klunderud, A., Fewer, D. P., Rohrlack, T., Jokela, J., Rouhiainen, L., Sivonen, K., Kristensen, T. & Jakobsen, K. S., 2008, In : BMC Evolutionary Biology. 8, 256, [20] s

Research output: Contribution to journalArticleScientificpeer-review

Expression of the nodularin synthetase genes in the Baltic Sea bloom-former cyanobacterium Nodularia spumigena strain AV1

Jonasson, S., Vintila, S., Sivonen, K. & El-Shehawy, R., 2008, In : FEMS Microbiology Ecology. 65, 1, p. 31-39 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Genetic diversity in strains of the genus Anabaena isolated from planktonic and benthic habitats of the Gulf of Finland (Baltic Sea)

Halinen, K., Fewer, D. P., Sihvonen, L. M., Lyra, C., Eronen, E. & Sivonen, K., 2008, In : FEMS Microbiology Ecology. 64, p. 199-208 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Hydrophobic derivatives of 5-(hydroxymethyl)isophthalic acid that selectively induce apoptosis in leukemia cells but not in fibroblasts

Galkin, A., Surakka, A., Boije af Gennäs, G., Ruotsalainen, T., Kreander, K., Tammela, P., Sivonen, K., Yli-Kauhaluoma, J. & Vuorela, P., 2008, In : Drug Development Research. 69, 4, p. 185-195 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Identification of hepatotoxin-producing cyanobacteria by DNA-chip

Rantala, A., Rizzi, E., Castiglioni, B., de Bellis, G. & Sivonen, K., 2008, In : Environmental Microbiology. 10, 3, p. 653-664 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Inhibition of angiotensin converting enzyme I caused by autolysis of potato proteins by enzymatic activities confined to different parts of the potato tuber

Mäkinen, S., Kelloniemi, J., Pihlanto, A., Mäkinen, K., Korhonen, H., Hopia, A., Valkonen, J. P. T. & Valkonen, J., 2008, In : Journal of Agricultural and Food Chemistry. 56, 21, p. 9875-9883 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Interplay of different transporters in the mediation of divalent heavy metal resistance in Pseudomonas putida KT2440

Leedjärv, A., Ivask, A. & Virta, M., 2008, In : Journal of Bacteriology. 190, 8, p. 2680-2689 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Molecular defects caused by temperature-sensitive mutations in Semliki Forest virus nsP1

Lulla, V., Sawicki, D. L., Sawicki, S. G., Lulla, A., Merits, A. & Ahola, T., 2008, In : Journal of Virology. 82, 18, p. 9236-9244 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Natural occurrence of microcystin synthetase deletion mutants capable of producing microcystins in strains of the genus Anabaena (Cyanobacteria)

Fewer, D. P., Tooming-Klunderud, A., Jokela, J., Wahlsten, M., Rouhiainen, L., Kristensen, T., Rohrlack, T., Jakobsen, K. S. & Sivonen, K., 2008, In : Microbiology. 154, 4, p. 1007-1014 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Phosphorylation analysis of plant viral proteins

Makinen, K. M. & Ivanov, K. I., 2008, In : Methods in molecular biology. 451, p. 339-359 21 p.

Research output: Contribution to journalArticleScientificpeer-review

Potato virus A genome-linked protein VPg is an intrinsically disordered molten globule-like protein with a hydrophobic core

Rantalainen, K. I., Uversky, V. N., Permi, P., Kalkkinen, N., Dunker, A. K. & Mäkinen, K., 2008, In : Virology. 377, 2, p. 280-288 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Preserving accuracy in GenBank

Bidartondo, M. I., Bruns, T. D., Blackwell, M., Edwards, I., Taylor, A. F. S., Horton, T., Zhang, N., Koljalg, U., May, G., Kuyper, T. W., Bever, J. D., Gilbert, G., Taylor, J. W., DeSantis, T. Z., Pringle, A., Borneman, J., Thorn, G., Berbee, M., Mueller, G. M., Andersen, G. L. & 237 othersVellinga, E. C., Branco, S., Anderson, I., Dickie, I. A., Avis, P., Timonen, S., Kjoller, R., Lodge, D. J., Bateman, R. M., Purvis, A., Crous, P. W., Hawkes, C., Barraclough, T., Burt, A., Nilsson, R. H., Larsson, K-H., Alexander, I., Moncalvo, J-M., Berube, J., Spatafora, J., Lumbsch, H. T., Blair, J. E., Suh, S-O., Pfister, D. H., Binder, M., Boehm, E. W., Kohn, L., Mata, J. L., Dyer, P., Sung, G-H., Dentinger, B., Simmons, E. G., Baird, R. E., Volk, T. J., Perry, B. A., Kerrigan, R. W., Campbell, J., Rajesh, J., Reynolds, D. R., Geiser, D., Humber, R. A., Hausmann, N., Szaro, T., Stajich, J., Gathman, A., Peay, K. G., Henkel, T., Robinson, C. H., Pukkila, P. J., Nguyen, N. H., Villalta, C., Kennedy, P., Bergemann, S., Aime, M. C., Kauff, F., Porras-Alfaro, A., Gueidan, C., Beck, A., Andersen, B., Marek, S., Crouch, J. A., Kerrigan, J., Ristaino, J. B., Hodge, K. T., Kuldau, G., Samuels, G. J., Raja, H. A., Voglmayr, H., Gardes, M., Janos, D. P., Rogers, J. D., Cannon, P., Woolfolk, S. W., Kistler, H. C., Castellano, M. A., Maldonado-Ramirez, S. L., Kirk, P. M., Farrar, J. J., Osmundson, T., Currah, R. S., Vujanovic, V., Chen, W., Korf, R. P., Atallah, Z. K., Harrison, K. J., Guarro, J., Bates, S. T., Bonello, P. E., Bridge, P., Schell, W., Rossi, W., Stenlid, J., Frisvad, J. C., Miller, R. M., Baker, S. E., Hallen, H. E., Janso, J. E., Wilson, A. W., Conway, K. E., Egerton-Warburton, L., Wang, Z., Eastburn, D., Ho, W. W. H., Kroken, S., Stadler, M., Turgeon, G., Lichtwardt, R. W., Stewart, E. L., Wedin, M., Li, D-W., Uchida, J. Y., Jumpponen, A., Deckert, R. J., Beker, H. J., Rogers, S. O., Xu, J., Johnston, P., Shoemaker, R. A., Liu, M., Marques, G., Summerell, B., Sokolski, S., Thrane, U., Widden, P., Bruhn, J. N., Bianchinotti, V., Tuthill, D., Baroni, T. J., Barron, G., Hosaka, K., Jewell, K., Piepenbring, M., Sullivan, R., Griffith, G. W., Bradley, S. G., Aoki, T., Yoder, W. T., Ju, Y-M., Berch, S. M., Trappe, M., Duan, W., Bonito, G., Taber, R. A., Coelho, G., Bills, G., Ganley, A., Agerer, R., Nagy, L., Roy, B. A., Laessoe, T., Hallenberg, N., Tichy, H-V., Stalpers, J., Langer, E., Scholler, M., Krueger, D., Pacioni, G., Poeder, R., Pennanen, T., Capelari, M., Nakasone, K., Tewari, J. P., Miller, A. N., Decock, C., Huhndorf, S., Wach, M., Vishniac, H. S., Yohalem, D. S., Smith, M. E., Glenn, A. E., Spiering, M., Lindner, D. L., Schoch, C., Redhead, S. A., Ivors, K., Jeffers, S. N., Geml, J., Okafor, F., Spiegel, F. W., Dewsbury, D., Carroll, J., Porter, T. M., Pashley, C., Carpenter, S. E., Abad, G., Voigt, K., Arenz, B., Methven, A. S., Schechter, S., Vance, P., Mahoney, D., Kang, S., Rheeder, J. P., Mehl, J., Greif, M., Ngala, G. N., Ammirati, J., Kawasaki, M., Gwo-Fang, Y., Matsumoto, T., Smith, D., Koenig, G., Luoma, D., May, T., Leonardi, M., Sigler, L., Taylor, D. L., Gibson, C., Sharpton, T., Hawksworth, D. L., Dianese, J. C., Trudell, S. A., Paulus, B., Padamsee, M., Callac, P., Lima, N., White, M., Barreau, C., Juncai, M. A., Buyck, B., Rabeler, R. K., Liles, M. R., Estes, D., Carter, R., Herr, J. M., Chandler, G., Kerekes, J., Cruse-Sanders, J., Galan Marquez, R., Horak, E., Fitzsimons, M., Doering, H., Yao, S., Hynson, N., Ryberg, M., Arnold, A. E. & Hughes, K., 2008, In : Science Progress. 319, p. 1616-1616 1 p.

Research output: Contribution to journalArticleScientific

Production of a recombinant industrial protein using barley cell cultures

Ritala, A., Wahlström, E. H., Holkeri, H., Hafren, A., Mäkeläinen, K., Baez, J., Mäkinen, K. & Nuutila, A. M., 2008, In : Protein Expression and Purification. 59, 2, p. 274-281 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Purification of viral genome-linked protein VPg from potato virus A-infected plants reveals several post-translationally modified forms of the protein

Hafren, A. & Mäkinen, K., 2008, In : Journal of General Virology. 89, 6, p. 1509-1518 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Real-time monitoring of non-specific toxicity using a Saccharomyces cerevisiae reporter system

Välimaa, A-L., Kivistö, A., Virta, M. & Karp, M., 2008, In : Sensors. 8, 10, p. 6433-6447 15 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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The interaction between concrete pavement and corrosion-induced copper runoff from buildings

Bahar, B., Herting, G., Odnevall Wallinder, I., Hakkila, K., Leygraf, C. & Virta, M., 2008, In : Environmental Monitoring and Assessment. 140, 1/3, p. 175-189 15 p.

Research output: Contribution to journalArticleScientificpeer-review

Three heterologous proteins simultaneously expressed from a chimeric potyvirus: infectivity, stability and the correlation of genome and virion lenghts

Kelloniemi, J., Mäkinen, K., Valkonen, J. P. T. & Valkonen, J., 2008, In : Virus Research. 135, p. 282-291 10 p.

Research output: Contribution to journalArticleScientificpeer-review

2007

Bacterial diversity and function in the Baltic Sea with an emphasis on cyanobacteria

Sivonen, K., Halinen, K., Sihvonen, L. M., Koskenniemi, K., Sinkko, H., Rantasärkkä, K., Moisander, P. H. & Lyra, C., 2007, In : Ambio. 36, p. 180-185 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Determination of estrogens and estrogenic activity in wastewater effluent by chemical analysis and the bioluminescent yeast assay

Salste, L., Leskinen, P., Virta, M. & Kronberg, L., 2007, In : Science of the Total Environment. 378, 3, p. 343-351 9 p.

Research output: Contribution to journalArticleScientificpeer-review