• Finland

  • Finland

Publications 1981 2020

Filter
Article
2008

Atomic force microscopy of potato virus A

Obraztsova, E. A., Kalinina, N. O., Taliansky, M. E., Gabrenaite-Verkhovskaya, R., Mäkinen, K. & Yaminsky, I. V., 2008, In : Russian Academy of Sciences. Colloid Journal. 70, p. 199-201 3 p.

Research output: Contribution to journalArticleScientificpeer-review

Biologically produced bifunctional recombinant protein nanoparticles for immunoassays

Jääskelainen, A., Harinen, R-R., Soukka, T., Lamminmäki, U., Korpimäki, T. & Virta, M., 2008, In : Analytical Chemistry. 80, 3, p. 583-587 5 p.

Research output: Contribution to journalArticleScientificpeer-review

Cylindrical inclusion protein of potato virus A is associated with a subpopulation of particles isolated from infected plants

Gabrenaite-Verhovskaya, R., Andreev, I. A., Kalinina, N. O., Torrance, L., Taliansky, M. E. & Mäkinen, K., 2008, In : Journal of General Virology. 89, 3, p. 829-838 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Detecting AhR ligands in sedimets using bioluminescent reporter yeast

Leskinen, P., Hilscherova, K., Sidlova, T., Kiviranta, H., Pessala, P., Salo, S., Verta, M. & Virta, M., 2008, In : Biosensors & Bioelectronics. 23, 12, p. 1850-1855 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Evidence for positive selection acting on microcystin synthetase adenylation domains in three cyanobacterial genera

Tooming-Klunderud, A., Fewer, D. P., Rohrlack, T., Jokela, J., Rouhiainen, L., Sivonen, K., Kristensen, T. & Jakobsen, K. S., 2008, In : BMC Evolutionary Biology. 8, 256, [20] s

Research output: Contribution to journalArticleScientificpeer-review

Expression of the nodularin synthetase genes in the Baltic Sea bloom-former cyanobacterium Nodularia spumigena strain AV1

Jonasson, S., Vintila, S., Sivonen, K. & El-Shehawy, R., 2008, In : FEMS Microbiology Ecology. 65, 1, p. 31-39 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Genetic diversity in strains of the genus Anabaena isolated from planktonic and benthic habitats of the Gulf of Finland (Baltic Sea)

Halinen, K., Fewer, D. P., Sihvonen, L. M., Lyra, C., Eronen, E. & Sivonen, K., 2008, In : FEMS Microbiology Ecology. 64, p. 199-208 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Hydrophobic derivatives of 5-(hydroxymethyl)isophthalic acid that selectively induce apoptosis in leukemia cells but not in fibroblasts

Galkin, A., Surakka, A., Boije af Gennäs, G., Ruotsalainen, T., Kreander, K., Tammela, P., Sivonen, K., Yli-Kauhaluoma, J. & Vuorela, P., 2008, In : Drug Development Research. 69, 4, p. 185-195 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Identification of hepatotoxin-producing cyanobacteria by DNA-chip

Rantala, A., Rizzi, E., Castiglioni, B., de Bellis, G. & Sivonen, K., 2008, In : Environmental Microbiology. 10, 3, p. 653-664 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Inhibition of angiotensin converting enzyme I caused by autolysis of potato proteins by enzymatic activities confined to different parts of the potato tuber

Mäkinen, S., Kelloniemi, J., Pihlanto, A., Mäkinen, K., Korhonen, H., Hopia, A., Valkonen, J. P. T. & Valkonen, J., 2008, In : Journal of Agricultural and Food Chemistry. 56, 21, p. 9875-9883 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Interplay of different transporters in the mediation of divalent heavy metal resistance in Pseudomonas putida KT2440

Leedjärv, A., Ivask, A. & Virta, M., 2008, In : Journal of Bacteriology. 190, 8, p. 2680-2689 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Molecular defects caused by temperature-sensitive mutations in Semliki Forest virus nsP1

Lulla, V., Sawicki, D. L., Sawicki, S. G., Lulla, A., Merits, A. & Ahola, T., 2008, In : Journal of Virology. 82, 18, p. 9236-9244 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Natural occurrence of microcystin synthetase deletion mutants capable of producing microcystins in strains of the genus Anabaena (Cyanobacteria)

Fewer, D. P., Tooming-Klunderud, A., Jokela, J., Wahlsten, M., Rouhiainen, L., Kristensen, T., Rohrlack, T., Jakobsen, K. S. & Sivonen, K., 2008, In : Microbiology. 154, 4, p. 1007-1014 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Phosphorylation analysis of plant viral proteins

Makinen, K. M. & Ivanov, K. I., 2008, In : Methods in molecular biology. 451, p. 339-359 21 p.

Research output: Contribution to journalArticleScientificpeer-review

Potato virus A genome-linked protein VPg is an intrinsically disordered molten globule-like protein with a hydrophobic core

Rantalainen, K. I., Uversky, V. N., Permi, P., Kalkkinen, N., Dunker, A. K. & Mäkinen, K., 2008, In : Virology. 377, 2, p. 280-288 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Preserving accuracy in GenBank

Bidartondo, M. I., Bruns, T. D., Blackwell, M., Edwards, I., Taylor, A. F. S., Horton, T., Zhang, N., Koljalg, U., May, G., Kuyper, T. W., Bever, J. D., Gilbert, G., Taylor, J. W., DeSantis, T. Z., Pringle, A., Borneman, J., Thorn, G., Berbee, M., Mueller, G. M., Andersen, G. L. & 237 others, Vellinga, E. C., Branco, S., Anderson, I., Dickie, I. A., Avis, P., Timonen, S., Kjoller, R., Lodge, D. J., Bateman, R. M., Purvis, A., Crous, P. W., Hawkes, C., Barraclough, T., Burt, A., Nilsson, R. H., Larsson, K-H., Alexander, I., Moncalvo, J-M., Berube, J., Spatafora, J., Lumbsch, H. T., Blair, J. E., Suh, S-O., Pfister, D. H., Binder, M., Boehm, E. W., Kohn, L., Mata, J. L., Dyer, P., Sung, G-H., Dentinger, B., Simmons, E. G., Baird, R. E., Volk, T. J., Perry, B. A., Kerrigan, R. W., Campbell, J., Rajesh, J., Reynolds, D. R., Geiser, D., Humber, R. A., Hausmann, N., Szaro, T., Stajich, J., Gathman, A., Peay, K. G., Henkel, T., Robinson, C. H., Pukkila, P. J., Nguyen, N. H., Villalta, C., Kennedy, P., Bergemann, S., Aime, M. C., Kauff, F., Porras-Alfaro, A., Gueidan, C., Beck, A., Andersen, B., Marek, S., Crouch, J. A., Kerrigan, J., Ristaino, J. B., Hodge, K. T., Kuldau, G., Samuels, G. J., Raja, H. A., Voglmayr, H., Gardes, M., Janos, D. P., Rogers, J. D., Cannon, P., Woolfolk, S. W., Kistler, H. C., Castellano, M. A., Maldonado-Ramirez, S. L., Kirk, P. M., Farrar, J. J., Osmundson, T., Currah, R. S., Vujanovic, V., Chen, W., Korf, R. P., Atallah, Z. K., Harrison, K. J., Guarro, J., Bates, S. T., Bonello, P. E., Bridge, P., Schell, W., Rossi, W., Stenlid, J., Frisvad, J. C., Miller, R. M., Baker, S. E., Hallen, H. E., Janso, J. E., Wilson, A. W., Conway, K. E., Egerton-Warburton, L., Wang, Z., Eastburn, D., Ho, W. W. H., Kroken, S., Stadler, M., Turgeon, G., Lichtwardt, R. W., Stewart, E. L., Wedin, M., Li, D-W., Uchida, J. Y., Jumpponen, A., Deckert, R. J., Beker, H. J., Rogers, S. O., Xu, J., Johnston, P., Shoemaker, R. A., Liu, M., Marques, G., Summerell, B., Sokolski, S., Thrane, U., Widden, P., Bruhn, J. N., Bianchinotti, V., Tuthill, D., Baroni, T. J., Barron, G., Hosaka, K., Jewell, K., Piepenbring, M., Sullivan, R., Griffith, G. W., Bradley, S. G., Aoki, T., Yoder, W. T., Ju, Y-M., Berch, S. M., Trappe, M., Duan, W., Bonito, G., Taber, R. A., Coelho, G., Bills, G., Ganley, A., Agerer, R., Nagy, L., Roy, B. A., Laessoe, T., Hallenberg, N., Tichy, H-V., Stalpers, J., Langer, E., Scholler, M., Krueger, D., Pacioni, G., Poeder, R., Pennanen, T., Capelari, M., Nakasone, K., Tewari, J. P., Miller, A. N., Decock, C., Huhndorf, S., Wach, M., Vishniac, H. S., Yohalem, D. S., Smith, M. E., Glenn, A. E., Spiering, M., Lindner, D. L., Schoch, C., Redhead, S. A., Ivors, K., Jeffers, S. N., Geml, J., Okafor, F., Spiegel, F. W., Dewsbury, D., Carroll, J., Porter, T. M., Pashley, C., Carpenter, S. E., Abad, G., Voigt, K., Arenz, B., Methven, A. S., Schechter, S., Vance, P., Mahoney, D., Kang, S., Rheeder, J. P., Mehl, J., Greif, M., Ngala, G. N., Ammirati, J., Kawasaki, M., Gwo-Fang, Y., Matsumoto, T., Smith, D., Koenig, G., Luoma, D., May, T., Leonardi, M., Sigler, L., Taylor, D. L., Gibson, C., Sharpton, T., Hawksworth, D. L., Dianese, J. C., Trudell, S. A., Paulus, B., Padamsee, M., Callac, P., Lima, N., White, M., Barreau, C., Juncai, M. A., Buyck, B., Rabeler, R. K., Liles, M. R., Estes, D., Carter, R., Herr, J. M., Chandler, G., Kerekes, J., Cruse-Sanders, J., Galan Marquez, R., Horak, E., Fitzsimons, M., Doering, H., Yao, S., Hynson, N., Ryberg, M., Arnold, A. E. & Hughes, K., 2008, In : Science Progress. 319, p. 1616-1616 1 p.

Research output: Contribution to journalArticleScientific

Production of a recombinant industrial protein using barley cell cultures

Ritala, A., Wahlström, E. H., Holkeri, H., Hafren, A., Mäkeläinen, K., Baez, J., Mäkinen, K. & Nuutila, A. M., 2008, In : Protein Expression and Purification. 59, 2, p. 274-281 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Purification of viral genome-linked protein VPg from potato virus A-infected plants reveals several post-translationally modified forms of the protein

Hafren, A. & Mäkinen, K., 2008, In : Journal of General Virology. 89, 6, p. 1509-1518 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Real-time monitoring of non-specific toxicity using a Saccharomyces cerevisiae reporter system

Välimaa, A-L., Kivistö, A., Virta, M. & Karp, M., 2008, In : Sensors. 8, 10, p. 6433-6447 15 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

The interaction between concrete pavement and corrosion-induced copper runoff from buildings

Bahar, B., Herting, G., Odnevall Wallinder, I., Hakkila, K., Leygraf, C. & Virta, M., 2008, In : Environmental Monitoring and Assessment. 140, 1/3, p. 175-189 15 p.

Research output: Contribution to journalArticleScientificpeer-review

Three heterologous proteins simultaneously expressed from a chimeric potyvirus: infectivity, stability and the correlation of genome and virion lenghts

Kelloniemi, J., Mäkinen, K., Valkonen, J. P. T. & Valkonen, J., 2008, In : Virus Research. 135, p. 282-291 10 p.

Research output: Contribution to journalArticleScientificpeer-review

2007

Bacterial diversity and function in the Baltic Sea with an emphasis on cyanobacteria

Sivonen, K., Halinen, K., Sihvonen, L. M., Koskenniemi, K., Sinkko, H., Rantasärkkä, K., Moisander, P. H. & Lyra, C., 2007, In : Ambio. 36, p. 180-185 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Determination of estrogens and estrogenic activity in wastewater effluent by chemical analysis and the bioluminescent yeast assay

Salste, L., Leskinen, P., Virta, M. & Kronberg, L., 2007, In : Science of the Total Environment. 378, 3, p. 343-351 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Direct evidence for production of microcystins by Anabaena strains from the Baltic Sea

Halinen, K., Jokela, J., Fewer, D. P., Wahlsten, M., Sivonen, K. & Fewer, D. B., 2007, In : Applied and Environmental Microbiology. 73, 20, p. 6543-6550 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Enzymatic defects of the nsP2 proteins of Semliki Forest virus temperature-sensitive mutants

Balistreri, G., Caldentey, J., Kääriäinen, L. & Ahola, T., 2007, In : Journal of Virology. 81, 6, p. 2849-2860 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Fibre-optic bacterial biosensors and their application for the analysis of bioavailable Hg and As in soils and sediments from Aznalcollar mining area in Spain

Ivask, A., Green, T., Polyak, B., Mor, A., Kahru, A., Virta, M. & Marks, R., 2007, In : Biosensors & Bioelectronics. 22, 7, p. 1396-1402 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Identification of a new gene PA5017 involved in flagella-mediated motility, chemotaxis and biofilm formation in Pseudomonas aeruginosa

Li, Y., Xia, H., Bai, F., Xu, H., Yang, L., Yao, H., Zhang, L., Zhang, X., Bai, Y., Saris, P. E. J., Tolker-Nielsen, T. & Qiao, M., 2007, In : FEMS Microbiology Letters. 272, 2, p. 188-195 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Identification of the most abundant Lactobacillus species in the crop of 1- and 5-week-old broiler chickens

Hilmi, H. T. A., Surakka, A., Apajalahti, J. & Saris, P. E. J., 2007, In : Applied and Environmental Microbiology. 73, 24, p. 7867-7873 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Interaction effects of N:P ratios and frequency of nutrient supply on the plankton community in the northern Baltic Sea

Lagus, A., Suomela, J., Helminen, H., Lehtimäki, J. M., Sipura, J., Sivonen, K. & Suominen, L., 2007, In : Marine Ecology. Progress Series. 332, p. 77-92 16 p.

Research output: Contribution to journalArticleScientificpeer-review

Interlaboratory comparison of Taq Nuclease Assays for the quantification of the toxic cyanobacteria Microcystis sp

Schober, E., Werndl, M., Laakso, K., Korschineck, I., Sivonen, K. & Kurmayer, R., 2007, In : Journal of Microbiological Methods. 69, p. 122-128 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Molekyylitiedon avulla influenssaa vastaan

Kääriäinen, L. & Ahola, T., 2007, In : Duodecim. 123, p. 899-907 9 p.

Research output: Contribution to journalArticleScientific

Nisin biosynthesis in vitro

Cheng, F., Takala, T. M. & Saris, P. E. J., 2007, In : Journal of molecular microbiology and biotechnology : JMMB. 13, 4, p. 248-254 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Phosphorus limitation and diel control of nitrogen-fixing cyanobacteria in the Baltic Sea

Moisander, P. H., Paerl, H. W., Dyble, J. & Sivonen, K., 2007, In : Marine Ecology. Progress Series. 345, p. 41-50

Research output: Contribution to journalArticleScientificpeer-review

Production of apoferritin-based bioinorganic hybrid nanoparticles by bacterial fermentation followed by self-assembly

Jääskeläinen, A., Harinen, R-R., Lamminmäki, U., Korpimäki, T., Pelliniemi, L. J., Soukka, T. & Virta, M., 2007, In : Small. 3, 8, p. 1362-1367 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Quantification of ecotoxicological tests based on bioluminescence using Polaroid film

Tamminen, M. & Virta, M., 2007, In : Chemosphere. 66, 7, p. 1329-1335 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Quantitative real-time PCR detection of toxic Nodularia cyanobacteria in the Baltic Sea

Koskenniemi, K., Lyra, C., Rajaniemi-Wacklin, P., Jokela, J. & Sivonen, K., 2007, In : Applied and Environmental Microbiology. 73, 7, p. 2173-2179 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Recurrent adenylation domain replacement in the microcystin synthetase gene cluster

Fewer, D. P., Rouhiainen, L., Jokela, J., Wahlsten, M., Laakso, K., Wang, H. & Sivonen, K., 2007, In : BMC Evolutionary Biology. 7, p. 183 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Release and chemical speciation of copper from anti-fouling paints with different active copper compounds in artificial seawater

Sandberg, J., Odenvall Wallinder, I., Leygraf, C. & Virta, M., 2007, In : Materials and Corrosion. 58, 3, p. 165-172 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Role of the amphipathic peptide of Semliki Forest virus replicase protein nsP1 in membrane association and virus replication

Spuul, P., Salonen, A., Merits, A., Jokitalo, E., Kääriäinen, L. & Ahola, T., 2007, In : Journal of Virology. 81, 2, p. 872-883 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Strains of the cyanobacterial genera Calothrix and Rivularia isolated from the Baltic Sea display cryptic diversity and are distantly related to Gloeotrichia and Tolypothrix

Sihvonen, L. M., Lyra, C., Fewer, D. P., Rajaniemi-Wacklin, P., Lehtimäki, J. M., Wahlsten, M. & Sivonen, K., 2007, In : FEMS Microbiology Ecology. 61, p. 74-84 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Testing of internal translation initiation via dicistronic constructs in yeast is complicated by production of extraneous transcripts

Mäkeläinen, K. J. & Mäkinen, K., 2007, In : Gene. 391, p. 275-284 10 p.

Research output: Contribution to journalArticleScientificpeer-review

The characterization and application of Calotropis procera, a coagulant in Nigerian Wara cheese

Raheem, D., Suri, N. & Saris, P. E., 2007, In : International Journal of Food Science and Technology. 42, 2, p. 220-223 4 p.

Research output: Contribution to journalArticleScientificpeer-review

2006

Actinobacterial communities of boreal forest soil and lake water are rich in mycobacteria

Niva, M., Hernesmaa, A., Haahtela, K., Salkinoja-Salonen, M., Sivonen, K. & Haukka, K., 2006, In : Boreal Environment Research. 11, 1, p. 45-53 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Allelopathy of Baltic Sea cyanobacteria: no evidence for the role of nodularin

Suikkanen, S., Engström-Öst, J., Jokela, J., Sivonen, K. & Viitasalo, M., 2006, In : Journal of Plankton Research. 28, 6, p. 543-550 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Alteration of the canine small-intestinal lactic acid bacterium microbiota by feeding of potential probiotics

Manninen, T. J. K., Rinkinen, M. L., Beasley, S. S. & Saris, P. E. J., 2006, In : Applied and Environmental Microbiology. 72, 10, p. 6539-6543 5 p.

Research output: Contribution to journalArticleScientificpeer-review

Analysis of bioavailable phenols from natural samples by recombinant luminescent bacterial sensors

Leedjärv, A., Ivask, A., Virta, M. & Kahru, A., 2006, In : Chemosphere. 64, 11, p. 1910-1919 10 p.

Research output: Contribution to journalArticleScientificpeer-review

A novel function for a ubiquitous plant enzyme pectin methylesterase: The enhancer of RNA silencing

Dorokhov, Y. L., Frolova, O. Y., Skurat, E. V., Ivanov, P. A., Gasanova, T. V., Sheveleva, A. A., Ravin, N. V., Mäkinen, K. M., Klimyuk, V. I., Skryabin, K. G., Gleba, Y. Y. & Atabekov, J. G., 2006, In : FEBS Letters. 580, p. 3872-3878 7 p.

Research output: Contribution to journalArticleScientificpeer-review

An unusual structure at one end of potato potyvirus particles

Torrance, L., Andreev, I. A., Gabrenaite-Verhovskaya, R., Cowan, G., Mäkinen, K. & Taliansky, M. E., 2006, In : Journal of Molecular Biology. 357, 1, p. 1-8 8 p.

Research output: Contribution to journalArticleScientificpeer-review

A potyvirus-based gene vector allows producing active human S-COMT and animal GFP, but not human sorcin, in vector-infected plants

Kelloniemi, J., Mäkinen, K. & Valkonen, J., 2006, In : Biochimie. 88, p. 505-513 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Bioassay for nisin in milk, processed cheese, salad dressings, canned tomatoes, and liquid egg products

Hakovirta, J., Reunanen, J. & Saris, P. E. J., 2006, In : Applied and Environmental Microbiology. 72, p. 1001-1005 5 p.

Research output: Contribution to journalArticleScientificpeer-review