Doctoral school in biological, environmental and food sciences

  • Finland

  • Finland

Publications 1986 2020

2019

Fungi from Soomaa National Park: rarities and species new for Estonia

Põldmaa, K., Spirin, V., Miettinen, O., Runnel, K., Savchenko, A., Pärtel, K. & Kõljalg, U., 2019, In : Folia Cryptogamica Estonica. 56, p. 127-136 10 p.

Research output: Contribution to journalArticleScientificpeer-review

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Gametophytic transcriptomics of an early embryophyte (Blasia pusilla) and comparative landscape of gametophyte evolution

Sablok, G., He, X., Miranto, M., Peltomaa, E., Flores, J., Sleith, R., Karol, K., Delwiche, C., Bell, N., Paulin, L., Poczai, P. & Hyvönen, J., 26 Jun 2019.

Research output: Conference materialsPosterResearchpeer-review

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gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output

Kammonen, J. I., Smolander, O-P., Paulin, L., Pereira, P. A. B., Laine, P., Koskinen, P., Jernvall, J. & Auvinen, P., 9 Sep 2019, In : PLoS One. 14, 9, p. e0216885

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Generalist life cycle aids persistence of Alexandrium ostenfeldii (Dinophyceae) in seasonal coastal habitats of the Baltic Sea

Jerney, J., Ahonen, S. A., Hakanen, P., Suikkanen, S. & Kremp, A., 13 Sep 2019, In : Journal of Phycology. 0, ja

Research output: Contribution to journalArticleScientificpeer-review

Genome-wide association studies targeting the yield of extraembryonic fluid and production traits in Russian White chickens

Kudinov, A. A., Dementieva, N. V., Mitrofanova, O. V., Stanishevskaya, O. I., Fedorova, E. S., Larkina, T. A., Mishina, A. I., Plemyashov, K. V., Griffin, D. K. & Romanov, M. N., 4 Apr 2019, In : BMC Genomics. 20, 1, 12 p., 270.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Genome-wide DNA methylation and transcriptomic profiles in the lifestyle strategies and asexual development of the forest fungal pathogen Heterobasidion parviporum

Zeng, Z., Wu, J., Kovalchuk, A., Raffaello, T., Wen, Z., Liu, M. & Asiegbu, F. O., 2 Jan 2019, In : Epigenetics. 14, 1, p. 16-40 25 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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GHH framework for understanding wicked environmental problems

Willamo, R., Holmström, C., Helenius, L., Sandström, V., Huotari, E. T. I., Haapanen, L., Nuotiomäki, A., Kalliokoski, L., Salminen, P., Kaarre, K., Värre, U., Happonen, J. & Kolehmainen, L., 29 Aug 2019. 1 p.

Research output: Conference materialsPosterResearch

Heavy metal content and health risk assessment of commonly patronized herbal medicinal preparations from the Kumasi metropolis of Ghana

Adusei-Mensah, F., Essumang, D. K., Agjei, R. O., Kauhanen, J., Tikkanen-Kaukanen, C. & Ekor, M., 2019, In : Journal of environmental health science & engineering.

Research output: Contribution to journalArticleScientificpeer-review

Helsingin kantakaupungin kehittyminen 1550–2018 – historialliset kaupunkiroolit, kaupunkisuunnittelu ja arkkitehtuuri

Norppa, M. V., 19 Mar 2019, Helsingin yliopisto. 815 p. (Department of Geosciences and Geography A; no. 72)

Research output: Book/ReportBookScientificpeer-review

Hydnoporia, an older name for Pseudochaete and Hymenochaetopsis, and typification of the genus Hymenochaete (Hymenochaetales, Basidiomycota)

Miettinen, O., Larsson, K-H. & Spirin, V., 4 Jun 2019, In : Fungal Systematics and Evolution. 4, p. 77-96 20 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Immunoassay for serodiagnosis of Zika virus infection based on time-resolved Förster resonance energy transfer

Kareinen, L., Hepojoki, S., Huhtamo, E., Korhonen, E. M., Schmidt-Chanasit, J., Hedman, K., Hepojoki, J. & Vapalahti, O., 23 Jul 2019, In : PLoS One. 14, 7, p. e0219474

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Incorporating stakeholders' values into environmental decision support: A Bayesian Belief Network approach

Laurila-Pant, M., Mäntyniemi, S., Venesjärvi, R. & Lehikoinen, A., 21 Aug 2019, In : Science of the Total Environment.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Insights into the Phylogeny and Evolution of ColdShock Proteins: From Enteropathogenic Yersinia andEscherichia coli to Eubacteria

Tao, Y., Keto-Timonen, R., Jiang, X., Virtanen, J-P. & Korkeala, H., 20 Aug 2019, In : International Journal of Molecular Sciences. 20, 16, 14 p., 4059.

Research output: Contribution to journalArticleScientificpeer-review

Open Access

Integrating multi-level values and pro-environmental behavior in a U.S. protected area

van Riper, C., Winkler-Schor, S., Foelske, L., Keller, R., Braito, M., Raymond, C., Eriksson, M., Golebie, E. & Johnson, D., Mar 2019, In : Sustainability Science. p. 1-14 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Introduction to Special Issue of Molecular Plant Pathology - “Extracellular and intracellular perception of plant viruses”.

Aranda, M., Mäkinen, K. & Verchot, J., 2 Jun 2019, (Accepted/In press)

Research output: Book/ReportAnthology or special issueScientific

Kuinka rakentaa puusta hyvää asumista? How to use wood to build good living?

Miilumäki, N. & Autio, M., 2019, In : Puu : suomalaista puuarkkitehtuuria ja -rakentamista. 39, 1, p. 56-59 4 p.

Research output: Contribution to journalArticleGeneral public

Open Access

Label-Free Proteomics Approach Characterizes Plasma Protein Signature of Donor Brain Death

Lukac, J., Saraswat, M., Holmström, E., Dhaygude, K., Joenväärä, S., Krebs, R., Nykänen, A., Renkonen, R. & Lemström, K., Apr 2019, In : Journal of Heart and Lung Transplantation. 38, 4, Supplement, p. S159

Research output: Contribution to journalConference articleScientificpeer-review

Lepakkotiedeprojekti lukioluokille

Lundberg, P. K., Suominen, K. M. & Lilley, T. M., 22 Mar 2019, In : Natura. 2019, 1, p. 11 1 p.

Research output: Contribution to journalArticleProfessional

Light interception in experimental forests affected by tree diversity and structural complexity of dominant canopy

Rissanen, K., Martin-Guay, M-O., Riopel-Bouvier, A-S. & Paquette, A., 15 Jul 2019, In : Agricultural and Forest Meteorology. 278, 9 p., 107655.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Low toxin doses change plant size distribution in dense populations – Glyphosate exposed Hordeum vulgare as a greenhouse case study

Belz, R. G. & Sinkkonen, A., 8 Aug 2019, In : Environment International. 132

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Luontokosketus ehkäisee sairauksia

Puhakka, R., Roslund, M. & Sinkkonen, A., 2 Jun 2019, In : Etelä-Suomen Sanomat. p. B15 1 p.

Research output: Contribution to journalArticleGeneral public

Materialism, awareness of environmental consequences and environmental philanthropic behavior among potential donors

Lundberg, P. K., Vainio, S. A., Ojala, A. & Arponen, A. K. I., 2019, (Accepted/In press) In : Environmental Values.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Meat and bone meal as a novel biostimulation agent in hydrocarbon contaminated soils

Liu, X., Selonen, V., Steffen, K., Surakka, M., Rantalainen, A-L., Romantschuk, M. & Sinkkonen, A., 11 Mar 2019, In : Chemosphere. 225, p. 574-578 25 p.

Research output: Contribution to journalArticleScientificpeer-review

Microalgae are suitable protein feeds for lactating dairy cows

Lamminen, M., Halmemies-Beauchet-Filleau, A., Kokkonen, T., Jaakkola, S. & Vanhatalo, A., Sep 2019, p. 328. 1 p.

Research output: Conference materialsAbstractResearchpeer-review

Microsatellite Diversity, Complexity, and Host Range of Mycobacteriophage Genomes of the Siphoviridae Family

Alam, C. M., Iqbal, A., Sharma, A., Schulman, A. H. & Ali, S., 14 Mar 2019, In : Frontiers in Genetics. 10, 11 p., 207.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Mobiilisovellus vapaa-ajan asukkaiden osallisuuden parantamisen ja joukkoistamisen välineenä

Rantanen, M., Kujala, S. & Paulus, E. W., Sep 2019.

Research output: Conference materialsAbstractResearch

Mobile PEAR transcription factors integrate positional cues to prime cambial growth

Miyashima, S., Roszak, P., Sevilem, I., Toyokura, K., Blob, B., Heo, J., Mellor, N., Help-Rinta-Rahko, H., Otero, S., Smet, W., Boekschoten, M., Hooiveld, G., Hashimoto, K., Smetana, O., Siligato, R., Wallner, E-S., Mähönen, A. P., Kondo, Y., Melnyk, C. W., Greb, T. & 5 othersNakajima, K., Sozzani, R., Bishopp, A., De Rybel, B. & Helariutta, Y., 24 Jan 2019, In : Nature. 565, 7740, p. 490-+ 21 p.

Research output: Contribution to journalArticleScientificpeer-review

Modelling soil moisture - soil strength relationship of fine-grained upland forest soils

Uusitalo, J., Ala-Ilomaki, J., Lindeman, H., Toivio, J. & Siren, M., 2019, In : Silva Fennica. 53, 1, 16 p., 10050.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Movement seasonality in a desert-dwelling bat revealed by miniature GPS loggers

Conenna, I., López-Baucells, A., Rocha, R., Ripperger, S. & Cabeza, M., 16 Aug 2019, In : Movement Ecology. 7, 1, 10 p., 27.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Multiple-pollutant cost-efficiency: Coherent water and climate policy for agriculture

Lötjönen, S. & Ollikainen, M., 24 Sep 2019, In : Ambio.

Research output: Contribution to journalArticleScientificpeer-review

Open Access

Nauji plunksnu naudojimo vélyvojo mezolito ritualiniame kontekste jrodymai. Donkalio 2 kapo (Lietuva) mikroarcheologija (apie 6000 m. pr. Kr.(BC)).

Mannermaa, K., Kirkinen, T. & Juhola, T., 2019, Biržulis. Medžiotojai, žvejai ir senieji žemdirbiai X-II tūkstantmetyje pr. Kr. Paminklų tyrinėjimai. .. p. 374-381 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientific

Notebook: Customizable web forms for recording observations

Raitio, O. A., Juslén, A., Sirkiä, P., Lehikoinen, A., Tähtinen, M., Piirainen, E. & Riihikoski, V-M., 20 Aug 2019.

Research output: Conference materialsAbstractResearchpeer-review

Open Access

On the identity of Herbertus aduncus (Dicks.) Gray, a taxonomic update

Sun, Y. & He, X., Sep 2019, In : Acta Bryolichenologica Asiatica. 8, p. 145–161 16 p.

Research output: Contribution to journalArticleScientificpeer-review

Osmoprotectant-mediated abiotic stress tolerance: Recent advances and future perspectives

Hossain, M. A. (ed.), Kumar, V. (ed.), Burritt, D. (ed.), Fujita, M. (ed.) & Mäkelä, P., 29 Nov 2019, (Accepted/In press) Springer.

Research output: Book/ReportAnthology or special issueScientificpeer-review

Policy narratives on WMC as a construction sector innovation

Vihemäki, H., Toivonen, R. & Toppinen, A., 30 Sep 2019, (Unpublished).

Research output: Conference materialsPosterResearch

Potential of microalgae to replace conventional protein feeds for sustainable dairy cow nutrition

Lamminen, M. E., 2019, Helsinki: University of Helsinki. 85 p.

Research output: ThesisDoctoral ThesisCollection of Articles

Open Access

Prenylated indole alkaloids and benzoate derivatives in antibacterial extracts of Friesodielsia obovata Verdc. and Hexalobus monopetalus Engl. & Diels

Fyhrquist, P. J., Salih, E., Vuorela, H. & Julkunen-Tiitto, R., 1 Jul 2019, Reviews on Clinical Pharmacology and Drug Therapy (Indexed . Санкт-Петербург, p. 12 1 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Processed agrifood residues for phosphorus recycling in the field

Mäkelä, J. J., Ketoja, E., Kuisma, M. T., Salo, T., Yli-Halla, M. J. & Kahiluoto, H., 15 May 2019, In : Field Crops Research. 238, p. 93-112

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Open Access
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Quality and Safety of Bovine Raw Milk: Present Challenges and Technological Solutions

Munsch-Alatossava, P. & Alatossava, T., 17 Jul 2019, Milk Production, Processing and Marketing. Javed, K. (ed.). London: IntechOpen, 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Open Access
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Quantifying and easing conflicting goals between interest groups in natural resource planning

Eyvindson, K., Repo, A., Trivino, M., Pynnönen, S. & Mönkkönen, M., 27 Aug 2019, In : Canadian Journal of Forest Research. 49, p. 1233–1241

Research output: Contribution to journalArticleScientificpeer-review

Open Access

Reorganization of surviving mammal communities after the end-Pleistocene megafaunal extinction

Toth, A., Lyons, K., Barr, A., Behrensmayer, A., Blois, J. L., Bobe, R., Davis, M., Du, A., Eronen, J. T., Faith, J. T., Fraser, D., Gotelli, N., Graves, G., Jukar, A., Miller, J., Pineda-Munoz, S., Soul, L., Villasenor, A. & Alroy, J., 20 Sep 2019, In : Science. 365, 6459, p. 1305-1308 4 p.

Research output: Contribution to journalArticleScientificpeer-review

Research questions to facilitate the future development of European long-term ecosystem research infrastructures: A horizon scanning exercise

Musche, M., Adamescu, M., Angelstam, P., Bacher, S., Bäck, J., Buss, H. L., Duffy, C., Flaim, G., Gaillardet, J., Giannakis, G. V., Haase, P., Halada, L., Kissling, W. D., Lundin, L., Matteucci, G., Meesenburg, H., Monteith, D., Nikolaidis, N. P., Pipan, T., Pyšek, P. & 8 othersRowe, E. C., Roy, D. B., Sier, A., Tappeiner, U., Vilà, M., White, T., Zobel, M. & Klotz, S., 6 Sep 2019, In : Journal of Environmental Management. 250

Research output: Contribution to journalReview ArticleScientificpeer-review

Open Access
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Revealing the role of phenolic residues co-extracted with hemicelluloses as emulsion stabilizers

Lahtinen, M., Valoppi, F., Juntti, V., Kilpelainen, P. O. & Mikkonen, K. S., 2019.

Research output: Conference materialsAbstractResearchpeer-review

Role of Eelgrass in the Coastal Filter of Contrasting Baltic Sea Environments

Asmala, E., Gustafsson, C., Krause-Jensen, D., Norkko, A., Reader, H., Staehr, P. A. & Carstensen, J., 29 Jul 2019, In : Estuaries and Coasts.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Simulating solar-induced chlorophyll fluorescence in a boreal forest stand reconstructed from terrestrial laser scanning measurements

Liu, W., Atherton, J., Mõttus, M., Gastellu-Etchegorry, J-P., Malenovský, Z., Raumonen, P., Åkerblom, M., Mäkipää, R. & Porcar-Castell, A., 2 Jul 2019, (Accepted/In press) In : Remote Sensing of Environment.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Social information use about novel aposematic prey is not influenced by a predator's previous experience with toxins

Hamalainen, L., Mappes, J., Rowlane, H. M. & Thorogood, R., 10 Jul 2019, In : Functional Ecology. 11 p.

Research output: Contribution to journalArticleScientificpeer-review