Doctoral school in biological, environmental and food sciences

  • Finland

  • Finland

Publications 1986 2019

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2019

A case study on the re-establishment of the cyanolichen symbiosis: where do the compatible photobionts come from?

Cardós, J. L. H., Prieto, M., Jylhä, M. J., Aragón, G., Molina, M. C., Martínez, I. & Rikkinen, J., 22 Apr 2019, In : Annals of Botany. 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access

A cross-cultural survey of umami familiarity in European countries

Cecchini, M. P., Knaapila, A., Hoffmann, E., Boschi, F., Hummel, T. & Iannilli, E., 2019, In : Food Quality and Preference. 74, p. 172-178

Research output: Contribution to journalArticleScientificpeer-review

An annotated checklist of the bryophytes of Taita Hills region, Kenya

Enroth, J., Pocs, T., He, X., Nyqvist, P., Stam, Å. C. S., Malombe, I. & Rikkinen, J. K., 1 Jul 2019, In : Acta Musei Silesiae. Scientiae Naturales. 68, 1-2, p. 53–66 14 p.

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Antibacterial polymer fibres by rosin compounding and melt-spinning

Kanerva, M., Puolakka, A., Takala, T. M., Elert, A. M., Mylläri, V., Jönkkäri, I., Sarlin, E., Seitsonen, J., Ruokolainen, J., Saris, P. & Vuorinen, J., 8 May 2019, In : Materials Today Communications.

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Antibody response in snakes with boid inclusion body disease

Windbichler, K., Michalopoulou, E., Palamides, P., Pesch, T., Jelinek, C., Vapalahti, O., Kipar, A., Hetzel, U. & Hepojoki, J., 9 Sep 2019, In : PLoS One. 14, 9, p. e0221863

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Association of Shoot and Root Responses to Water Deficit in Young Faba Bean (Vicia faba L.) Plants

Belachew, K. Y., Nagel, K. A., Poorter, H. & Stoddard, F. L., 4 Sep 2019, In : Frontiers in plant science. 10

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Beyond rest and quiescence (endo‐ and ecodormancy): a novel model for quantifying plant‐environment interaction in bud dormancy release

Lundell, R., Hänninen, H., Saarinen, T., Åström, H. & Zhang, R., 31 Aug 2019, (Accepted/In press) In : Plant, Cell and Environment.

Research output: Contribution to journalArticleScientificpeer-review

Can we really predict a catastrophic worldwide decline of entomofauna and its drivers?

Cardoso, P., Branco, V. V., Chichorro, F., Fukushima, C. S. & Macías-Hernández, N., 9 Apr 2019, In : Global Ecology and Conservation. 20, 2 p., e00621.

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Carbon revenue in the profitability of agroforestry relative to monocultures

Waldén, P., Ollikainen, M. & Kahiluoto, H., 19 Feb 2019, In : Agroforestry Systems.

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Characterization of the interaction of the antifungal and cytotoxic cyclic glycolipopeptide hassallidin with sterol-containing lipid membranes.

Humisto, A., Jokela, J., Teigen, K., Wahlsten, M., Permi, P., Sivonen, K. & Herfindal, L., 1 Aug 2019, In : Biochimica et Biophysica Acta. Biomembranes. 1861, p. 1510-1521 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Comparing economic and biological management objectives in the commercial Baltic salmon fisheries

Holma, M., Lindroos, M., Romakkaniemi, A. & Oinonen, S., Feb 2019, In : Marine Policy. 100, p. 207-214 8 p.

Research output: Contribution to journalArticleScientificpeer-review

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Consumers’ perceptions on the properties of wood affecting their willingness to live in and prejudices against houses made of timber

Lähtinen, K., Harju, C. & Toppinen, A., 31 May 2019, In : Wood Material Science and Engineering. 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Cost function approach to water protection in forestry

Miettinen, J., Ollikainen, M., Nieminen, M. & Valsta, L., 4 Sep 2019, In : Water Resources and Economics.

Research output: Contribution to journalArticleScientificpeer-review

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Detection of the dispersion and residence of volcanic SO2⁠ and sulfate aerosol from Nabro in 2011

Liu, Y., Pellikka, P., Li, H. & Fang, X., 15 Jan 2019, In : Atmospheric Environment. 197, p. 36-44 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access

Detection thresholds for quinine, PTC, and PROP measured using taste strips

Cavazzana, A., Knaapila, A., Roßkopf, F., Han, P. & Hummel, T., 2019, In : European Archives of Oto-Rhino-Laryngology. 276, p. 753–759

Research output: Contribution to journalArticleScientificpeer-review

Differential regulation of auxin and cytokinin during the secondary vascular tissue regeneration in Populus trees

Chen, J-J., Wang, L-Y., Immanen, J., Nieminen, K., Spicer, R., Helariutta, Y., Zhang, J. & He, X-Q., 2 Aug 2019, In : New Phytologist. 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Diverse Environmental Microbiota as a Tool to Augment Biodiversity in Urban Landscaping Materials

Hui, N., Grönroos, M., Roslund, M. I., Parajuli, A., Vari, H. K., Soininen, L., Laitinen, O. H., Sinkkonen, A. & The ADELE Research Group, 22 Mar 2019, In : Frontiers in Microbiology. 10, 10 p., 536.

Research output: Contribution to journalArticleScientificpeer-review

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Draft genome sequences of three monokaryotic isolates of the white-rot basidiomycete fungus Dichomitus squalens

Casado López, S., Peng, M., Daly, P., Andreopoulos, B., Pangilinan, J., Lipzen, A., Riley, R., Ahrendt, S., Ng, V., Barry, K., Daum, C., Grigoriev, I. V., Hilden, S. K., Mäkelä, M. R. & de Vries, R. P., 2019, (Accepted/In press) In : Microbiology Resource Announcements.

Research output: Contribution to journalArticleScientificpeer-review

Dual RNA-seq analysis provides new insights into interactions between Norway spruce and necrotrophic pathogen Heterobasidion annosum s.l.

Kovalchuk, A., Zeng, Z., Ghimire, R. P., Kivimäenpää, M., Raffaello, T., Liu, M., Mukrimin, M., Kasanen, R. A. O., Sun, H., Julkunen-Tiitto, R., Holopainen, J. K. & Asiegbu, F. O., 3 Jan 2019, In : BMC Plant Biology. 19, 2, 17 p., 2.

Research output: Contribution to journalArticleScientificpeer-review

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Economic Insights in Ecological Compensations: Market Analysis With an Empirical Application to the Finnish Economy

Kangas, J. & Ollikainen, M., May 2019, In : Ecological Economics. 159, p. 54-67 14 p.

Research output: Contribution to journalArticleScientificpeer-review

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Ecosystem responses to increased organic carbon concentration: comparing results based on longterm monitoring and whole-lake experimentation

Kankaala, P., Arvola, L., Hiltunen, M., Huotari, J., Jones, R. I., Hannu, N., Ojala, A., Olin, M., Peltomaa, E., Peura, S., Rask, M., Tulonen, T. & Vesala, S., 30 Jul 2019, In : Inland waters.

Research output: Contribution to journalArticleScientificpeer-review

Effect of canopy structure on the performance of tree mapping methods in urban parks

Tanhuanpää, T., Yu, X., Luoma, V., Saarinen, N., Raisio, J., Hyyppä, J., Kumpula, T. & Holopainen, M., 23 Aug 2019, In : Urban Forestry & Urban Greening.

Research output: Contribution to journalArticleScientificpeer-review

Effect of water deficit stress on seedling biomass and physio-chemical characteristics in different species of wheat possessing the D genome.

Pour-Aboughadareh, A., Omidi, M., Naghavi, M., Etminan, A., Mehrabi, AA., Poczai, P. & Biat, H., 2019, (Accepted/In press) In : Agronomy.

Research output: Contribution to journalArticleScientificpeer-review

Effects of allochthonous DOM input on microbial composition and nitrogen cycling genes at two contrasting estuarine sites

Happel, E. M., Trine, M., Teikari, J., Huchaiah, V., Alneberg, J., Andersson, A. F., Sivonen, K., Middelboe, M., Kisand, V. & Riemann, L., 2019, (Accepted/In press) In : FEMS Microbiology Ecology.

Research output: Contribution to journalArticleScientificpeer-review

ELIMÄKI locus is required for mechanosensing and proprioception in birch trees

Helariutta, Y., 2019, (Submitted) In : Nature plants.

Research output: Contribution to journalArticleScientificpeer-review

Eliminating vicine and convicine, the main anti-nutritional factors restricting faba bean usage

Khazaei, H., Purves, R. W., Hughes, J., Link, W., O'Sullivan, D. M., Schulman, A. H., Björnsdotter, E., Geu-Flores, F., Nadzieja, M., Andersen, S. U., Stougaard, J., Vandenberg, A. & Stoddard, F. L., 2 Aug 2019, In : Trends in Food Science & Technology. 91, p. 549-556 8 p.

Research output: Contribution to journalArticleScientificpeer-review

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Enrichment of intracellular sulphur cycle –associated bacteria in intertidal benthic foraminifera revealed by 16S and aprA gene analysis

Salonen, I., Chronopoulou, M., Bird, C., Reichart, G-J. & Koho, K., 12 Aug 2019, In : Scientific Reports. 9, 11692.

Research output: Contribution to journalArticleScientificpeer-review

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Environmentally-compatible alkyd paints stabilized by wood hemicelluloses

Mikkonen, K. S., Kirjoranta, S., Xu, C., Hemming, J., Pranovich, A., Bhattarai, M., Peltonen, L., Kilpeläinen, P., Maina, N., Tenkanen, M., Lehtonen, M. & Willför, S., 16 Mar 2019, In : Industrial Crops and Products. 133, p. 212-220

Research output: Contribution to journalArticleScientificpeer-review

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Open Access
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Evidence for natural selection and barrier leakage in candidate loci underlying speciation in wood ants

Kulmuni, J., Nouhaud, P., Pluckrose, L., Satokangas, I., Dhaygude, K. & Butlin, RK., 1 Jan 2019, In : bioRxiv : the preprint server for biology .

Research output: Contribution to journalArticleScientificpeer-review

Extensive Coverage of Marine Mineral Concretions Revealed in Shallow Shelf Sea Areas

Kaikkonen, L., Virtanen, E. A., Kostamo, K., Lappalainen, J. & Kotilainen, A. T., 4 Sep 2019, In : Frontiers in Marine Science. 6

Research output: Contribution to journalArticleScientificpeer-review

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Fecal pollution can explain antibiotic resistance gene abundances in anthropogenically impacted environments

Karkman, A., Parnanen, K. & Larsson, D. G. J., 8 Jan 2019, In : Nature Communications. 10, 8 p., 80.

Research output: Contribution to journalArticleScientificpeer-review

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Festetics’ ‘Genetic laws of Nature’ considered in relation to the prevailing concept of blood inheritance.

Wood, R. J., T. Szabó, A. & Poczai, P., 2019, (Submitted) In : Journal of the History of Biology.

Research output: Contribution to journalArticleScientificpeer-review

Forage Fish as Food: Consumer Perceptions on Baltic Herring

Pihlajamäki, M-E., Asikainen, A., Ignatius, S., Haapasaari, P. & Tuomisto, J., 2019, In : Sustainability. 11, p. 1-17 17 p.

Research output: Contribution to journalArticleScientificpeer-review

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FORESAIL-1 cubesat mission to measure radiation belt losses and demonstrate de-orbiting

Palmroth, M., Praks, J., Vainio, R., Janhunen, P., Kilpua, E. K. J., Ganushkina, N. Y., Afanasiev, A., Ala-Lahti, M., Alho, A., Asikainen, T., Asvestari, E., Battarbee, M., Binios, A., Bosser, A., Brito, T., Envall, J., Ganse, U., George, H., Gieseler, J., Good, S. & 39 othersGrandin, M., Haslam, S., Hedman, H-P., Hietala, H., Jovanovic, N., Kakakhel, S., Kalliokoski, M., Kettunen, V. V., Koskela, T., Lumme, E., Meskanen, M., Morosan, D., Mughal, M. R., Niemelä, P., Nyman, S., Oleynik, P., Osmane, A., Palmerio, E., Pfau-Kempf, Y., Peltonen, J., Plosila, J., Polkko, J., Poluianov, S., Pomoell, J., Price, D., Punkkinen, A., Punkkinen, R., Riwanto, B., Salomaa, L., Slavinskis, A., Säntti, T., Tammi, J., Tenhunen, H., Toivanen, P., Tuominen, J., Turc, L., Valtonen, E., Virtanen, P. & Westerlund, T., 21 May 2019, (Accepted/In press) In : Journal of geophysical research. Space physics. 0, ja

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Fourier-transform infrared (FT-IR) spectroscopy analysis discriminates asymptomatic and symptomatic Norway spruce trees

Mukrimin, M., Conrad, A. O., Kovalchuk, A., Julkunen-Tiitto, R., Bonello, P. & Asiegbu, F. O., 3 Sep 2019, In : Plant Science. 289

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gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output

Kammonen, J. I., Smolander, O-P., Paulin, L., Pereira, P. A. B., Laine, P., Koskinen, P., Jernvall, J. & Auvinen, P., 9 Sep 2019, In : PLoS One. 14, 9, p. e0216885

Research output: Contribution to journalArticleScientificpeer-review

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Genome-wide association studies targeting the yield of extraembryonic fluid and production traits in Russian White chickens

Kudinov, A. A., Dementieva, N. V., Mitrofanova, O. V., Stanishevskaya, O. I., Fedorova, E. S., Larkina, T. A., Mishina, A. I., Plemyashov, K. V., Griffin, D. K. & Romanov, M. N., 4 Apr 2019, In : BMC Genomics. 20, 1, 12 p., 270.

Research output: Contribution to journalArticleScientificpeer-review

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Open Access
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Greening of Daycare Yards with Biodiverse Materials Affords Well-Being, Play and Environmental Relationships

Puhakka, R., Rantala, O., Roslund, M., Rajaniemi, J., Laitinen, O. H. & Sinkkonen, A., 16 Aug 2019, In : International Journal of Environmental Research and Public Health. 16, 16, 16 p., 2948.

Research output: Contribution to journalArticleScientificpeer-review

Open Access

Heavy metal content and health risk assessment of commonly patronized herbal medicinal preparations from the Kumasi metropolis of Ghana

Adusei-Mensah, F., Essumang, D. K., Agjei, R. O., Kauhanen, J., Tikkanen-Kaukanen, C. & Ekor, M., 2019, In : Journal of environmental health science & engineering.

Research output: Contribution to journalArticleScientificpeer-review

How to improve governance of a complex social-ecological problem? Dioxins in Baltic salmon and herring

Haapasaari, P., Ignatius, S., Pihlajamäki, M-E., Sarkki, S., Tuomisto, J. & Delaney, A., 10 Sep 2019, In : Journal of Environmental Policy & Planning. p. 1-13 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access

Hydnoporia, an older name for Pseudochaete and Hymenochaetopsis, and typification of the genus Hymenochaete (Hymenochaetales, Basidiomycota)

Miettinen, O., Larsson, K-H. & Spirin, V., 4 Jun 2019, In : Fungal Systematics and Evolution. 4, p. 77-96 20 p.

Research output: Contribution to journalArticleScientificpeer-review

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Immunoassay for serodiagnosis of Zika virus infection based on time-resolved Förster resonance energy transfer

Kareinen, L., Hepojoki, S., Huhtamo, E., Korhonen, E. M., Schmidt-Chanasit, J., Hedman, K., Hepojoki, J. & Vapalahti, O., 23 Jul 2019, In : PLoS One. 14, 7, p. e0219474

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Incorporating stakeholders' values into environmental decision support: A Bayesian Belief Network approach

Laurila-Pant, M., Mäntyniemi, S., Venesjärvi, R. & Lehikoinen, A., 21 Aug 2019, In : Science of the Total Environment.

Research output: Contribution to journalArticleScientificpeer-review

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Insights into the Phylogeny and Evolution of ColdShock Proteins: From Enteropathogenic Yersinia andEscherichia coli to Eubacteria

Tao, Y., Keto-Timonen, R., Jiang, X., Virtanen, J-P. & Korkeala, H., 20 Aug 2019, In : International Journal of Molecular Sciences. 20, 16, 14 p., 4059.

Research output: Contribution to journalArticleScientificpeer-review

Open Access