Publications 2001 2019

2019

A Festetics rejtély: A Genetika Története és Festetics Imre Elfeledett Hagyatéka

Poczai, P., 2019, Kőszeg: Felsőbbfokú Tanulmányok Intézete . 159 p.

Research output: Book/ReportBookScientificpeer-review

An annotated checklist of the bryophytes of Taita Hills region, Kenya

Enroth, J., Pocs, T., He, X., Nyqvist, P., Stam, Å. C. S., Malombe, I. & Rikkinen, J. K., 1 Jul 2019, In : Acta Musei Silesiae. Scientiae Naturales. 68, 1-2, p. 53–66 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

Complete plastid genome sequence of African nightshade (Solanum scabrum) and comparative plastomics across Solanales

Sablok, G., Orejuela, A., He, X., Hyvönen, J., Särkinen, T. & Poczai, P., 19 Aug 2019.

Research output: Conference materialsPosterResearchpeer-review

File

Effect of water deficit stress on seedling biomass and physio-chemical characteristics in different species of wheat possessing the D genome.

Pour-Aboughadareh, A., Omidi, M., NAGHAVI, M., Etminan, A., MEHRABI, AA., Poczai, P. & BIAT, H., 2019, (Submitted) In : Agronomy.

Research output: Contribution to journalArticleScientificpeer-review

Exploring plant meiosis: a bioinformatics perspective

Sablok, G., He, X. & Hyvönen, J. T., 2019, (Submitted) In : Frontiers in plant science.

Research output: Contribution to journalArticleScientificpeer-review

Festetics’ ‘Genetic laws of Nature’ considered in relation to the prevailing concept of blood inheritance.

Wood, R. J., T. Szabó, A. & Poczai, P., 2019, (Submitted) In : Journal of the History of Biology.

Research output: Contribution to journalArticleScientificpeer-review

Gametophytic transcriptomics of an early embryophyte (Blasia pusilla) and comparative landscape of gametophyte evolution

Sablok, G., He, X., Miranto, M., Peltomaa, E., Flores, J., Sleith, R., Karol, K., Delwiche, C., Bell, N., Paulin, L., Poczai, P. & Hyvönen, J., 26 Jun 2019.

Research output: Conference materialsPosterResearchpeer-review

File

High levels of auxin signalling define the stem-cell organizer of the vascular cambium

Smetana, O., Mäkilä, R., Lyu, M., Amiryousefi, A., Rodriguez, F. S., Wu, M-F., Sole-Gil, A., Gavarron, M. L., Siligato, R., Miyashima, S., Roszak, P., Blomster, T., Reed, J. W., Broholm, S. & Mähönen, A. P., 24 Jan 2019, In : Nature. 565, 7740, p. 485-+ 20 p.

Research output: Contribution to journalArticleScientificpeer-review

iPASTIC: An online toolkit to estimate plant abiotic stress indices

Pour-Aboughadareh, A., Yousefian, M., Moradkhani, H., Poczai, P. & Siddique, K. HM., 2019, In : Applications in Plant Sciences. 7, 7, 6 p., e11278.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

Mitogenomics of Blasia pusilla as a tool for agricultural productivity

Sablok, G., He, X., Miranto, M. J., Flores, J. R., Peltomaa, E. T., Sleith, R., Karol, K., Delwiche, C., Bell, N., Paulin, L. G., Poczai, P. & Hyvönen, J. T., 24 Mar 2019.

Research output: Conference materialsPosterResearchpeer-review

Open Access
File

Molecular diversity and phytochemical variability in the Iranian poppy (Papaver bracteatum Lindl.): A baseline for conservation and utilization in future breeding programmes

Qaderi, A., Omidi, M., Pour-Aboughadareh, A., Poczai, P., Shaghaghi, J., MehrAfarin, A., Nohooji, M. G. & Etminan, A., Apr 2019, In : Industrial Crops and Products. 130, p. 237-247 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Phylogeny of the family Cladoniaceae (Lecanoromycetes, Ascomycota) based on sequences of multiple loci

Stenroos, S., Pino-Bodas, R., Hyvonen, J., Lumbsch, H. T. & Ahti, T., Aug 2019, In : Cladistics - the international journal of the Willi Hennig Society. 35, 4, p. 351-384 34 p.

Research output: Contribution to journalArticleScientificpeer-review

Protocols for miRNA Target Prediction in Plants

Sablok, G., Yang, K. & Wen, X., 2019, MicroRNA Target Identification: Methods and Protocols. Laganà, A. (ed.). New York: Humana Press, p. 65-73 9 p. (Methods in Molecular Biology ; vol. 1970).

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Sequencing the plastid genome of giant ragweed (Ambrosia trifida, Asteraceae) from a herbarium specimen

Sablok, G., Amiryousefi, A., He, X., Hyvönen, J. T. & Poczai, P., 28 Feb 2019, In : Frontiers in plant science. 10, 18 p., 218.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

STABILITYSOFT: a new online program to calculate parametric and non-parametric stability statistics for crop traits

Pour-Aboughadareh, A., Yousefian, M., Moradkhani, H., Poczai, P. & Siddique, K. HM., 15 Jan 2019, In : Applications in Plant Sciences. 7, 1, 6 p., 1211.

Research output: Contribution to journalEditorialScientificpeer-review

Open Access
File

Testing the feasibility of assisted migration as an ex situ conservation tool on selected threatened bryophytes

Laaka-Lindberg, S. & He, X., 2019, (In preparation) In : Biological Conservation.

Research output: Contribution to journalArticleScientificpeer-review

The emergence of genetics from Festetics’ sheep through Mendel’s peas to Bateson’s chickens

T. Szabó, A. & Poczai, P., Jun 2019, In : Journal of Genetics. 98, 2, 7 p., 63.

Research output: Contribution to journalArticleScientificpeer-review

The Good, the Coachman and the Sheep Breeders’ Society of Moravia: How Political Repression Stifled the Nascent Foundations of Heredity Research Prior to Mendel

Poczai, P., Sekerák, J., Bariska, I. & T. Szabó, A., 2019, (Submitted) In : Journal of the History of Biology.

Research output: Contribution to journalArticleScientificpeer-review

Unraveling salinity stress responses in ancestral and neglected wheat species: a baseline for conservation and utilization in future wheat improvement programs

Ahmadi, J., Pour-Aboughadareh, A., Fabriki-Ourang, S., Khalili, P. & Poczai, P., 2019, (Submitted) In : Physiology and Molecular Biology of Plants.

Research output: Contribution to journalArticleScientificpeer-review

2018

A revision of the Old World Black Nightshades (Morelloid clade of Solanum L., Solanaceae)

Särkinen, T., Poczai, P., Barboza, G., van der Weerden, G. M., Baden, M. & Knapp, S., 25 Jul 2018, In : PhytoKeys. 106, p. 1-223 223 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

Comparative assessment of chloroplast transcriptional responses highlights conserved and unique patterns across Triticeae members under salt stress

Mirzaei, S., Mansouri, M., Mohammadi‐Nejad, G. & Sablok, G., Jun 2018, In : Photosynthesis Research. 136, 3, p. 357-369 13 p.

Research output: Contribution to journalArticleScientificpeer-review

iMEC: Online Marker Efficiency Calculator

Amiryousefi, A., Hyvönen, J. & Poczai, P., Jun 2018, In : Applications in Plant Sciences. 6, 6, e1159.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

In silico identification and characterization of a diverse subset of conserved microRNAs in bioenergy crop Arundo donax L.

Jike, W., Sablok, G., Bertorelle, G., Li, M. & Varotto, C., 12 Nov 2018, In : Scientific Reports. 8, 13 p., 16667.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

IRscope: An online program to visualize the junction sites of chloroplast genomes

Amiryousefi, A., Hyvönen, J. T. & Poczai, P., 2018, In : Bioinformatics. 34, 17, p. 3030-3031 2 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

New national and regional biological records for Finland 9. Contributions to Bryophyta and Marchantiophyta 8.

Juutinen, R., Ulvinen, T., Kypärä, T., Huttunen, S., Vuorinen, K., Kuitunen, T., Parnela, A., Korvenpää, T., Syrjänen, K., Pihlaja, K., Köckinger, H., Konstantinova, N. A., Kestilä, A., Ervasti, E., He, X., Häyhä, T., Karttunen, K., Laaka-Lindberg, S., Torniainen, J., Vainio, O. & 2 othersVasander, H. & Vuorinen, E., 30 Nov 2018, In : Memoranda Societatis pro Fauna et Flora Fennica. 2018, 94, p. 84-99 16 p., 76604.

Research output: Contribution to journalArticleScientificpeer-review

On the identity of Herbertus aduncus (Dicks.) Gray, a taxonomic update

Sun, Y. & He, X., 2018, (Submitted) In : Acta Bryolichenologica Asiatica.

Research output: Contribution to journalArticleScientificpeer-review

Plastomics of charophycean Coleochaete orbicularis and embryophyte Blasia pusilla

Sablok, G., He, X., Miranto, M. J., Peltomaa, E., Bell, N., Sleith, R., Karol, K., Delwiche, C., Paulin, L. G., Poczai, P. & Hyvönen, J. T., 2018, p. 541. 1 p.

Research output: Conference materialsPosterResearchpeer-review

Shedding new light on the origin and spread of the brinjal eggplant (Solanum melongena L.; Solanaceae) and its wild relatives

Aubriot, X., Knapp, S., Syfert, M., Poczai, P. & Buerki, S., Jul 2018, In : American Journal of Botany. 105, 7, p. 1175-1187 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

Taxonomy based on science is necessary for global conservation

Thomson, S., Pyle, R., T. Ahyong, S., A. Alonso-Zarazaga, M., Ammirati, J., Ascher, J. S., Audisio, T. L., Azvedo-Santos, V. M., Bailly, N., Baker, W. J., Balke, M., Barclay, M. V. L., Barrett, R. L., Benine, R. C., Bickerstaff, J. R. M., Bouchard, P., Bour, R., Bourgoin, T., Boyoko, C. B., Breure, A. S. H. & 168 othersBrothers, D. J., Buffington, M. L., Byng, J. W., Campbell, D., Ceriaco, L. M. P., Cernák, I., Cerretti, P., Chang, C-H., Cho, S., Copus, J. M., Costello, M. J., Cseh, A., Csúzi, C., Culham, A., D'Elia, G., d'Udekem d'Acoz, C., Daneliya, M. E., M. de Vos, J., Dekker, R., Dickinson, E. C., Dickinson, T. A., Dijkstra, K-D. B., Dima, B., Dmitriev, D. A., Duistermaat, L., Dumbacher, J. P., Eiserhardt, W. L., Ekrem, T., Evenhuis, N. L., Faille, A., Fernández-Triana, J. L., Fiesler, E., Fishbein, M., Fordham, B. G., Freitas, A. V. L., Friol, N. R., Fritz, U., Frøslev, T., Funk, V. A., Gaimari, S. D., Garbino, G. S. T., Gardes, M., Garraffoni, A. R. S., Geml, J., C. Gill, A., Gray, A., Grazziotin, F. G., Greenslade, P., Gutiérrez, E. E., Harvey, M. S., Hazevoet, C. J., He, K., He, X., Helfer, S., Helgen, K. M., Heller, K., Garcia, F. H., Holstein, N., Horváth, M. K., Hovenkamp, P. H., Hwang, W. S., Hyvönen, J. T., Islam, M. B., Iverson, J. B., Ivie, M. A., Jaafar, Z., Jackson, M. D., Jayat, J. P., Johnson, N. F., Kaiser, H., Klitgård, B. B., Knapp, D. G., Kojima, J., Kõljalg, U., Kontschán, J., Krell, F-T., Krisai-Greihuber, I., Kullander, S., Latella, L., Lattke, J. E., Lencioni, V., Lewis, G. P., Lhano, M. G., Lujan, N. K., Luksenburg, J. A., Mariaux, J., Marinho-Filho, J., Marshall, C. J., Mate, J. F., McDonough, M. M., Michel, E., Miranda, V. F. O., Mitroiu, M-D., Molinari, J., Monks, S., Moore, A. J., Moratelli, R., Moreau, P-A., Murányi, D., Nakano, T., Nihei, S. S., Noyes, J., Ohl, M., Oleas, N. H., Orrell, T., Páll-Gergely, B., Pape, T., Papp, V., Parenti, L. R., Patterson, D., Pavlinov, I. Y., Pine, R. H., Poczai, P., Prado, J., Prathapan, D., Rabeler, R. K., Randall, J. E., Rheindt, F. E., Rhodin, A. G. J., Rodríguez, S. M., Rogers, D. C., de O. Roque, F., Rowe, K. C., Ruedas, L. A., Salazar-Bravo, J., Salvador, R. B., Sangster, G., Sarmiento, C. E., Schigel, D. S., Schmidt, S., Schueler, F. W., Segers, H., Snow, N., Souza-Dias, P. G. B., Stals, R., Stenroos, S. K., Stone, R. D., Sturm, C. F., Štys, P., Teta, P., Thomas, D. C., Timm, R. M., Tindall, B. J., Todd, J. A., Triebel, D., Valdecasas, A. G., van Dijk, P. P., van Heteren, A. H., Vizzini, A., Vorontsova, M., Wagner, P., Watling, L., Weakley, A., Walter-Schultes, F., Whitmore, D., Wilding, N., Will, K., Williams, J., Wilson, K., Winston, J. E., Wüster, W., Yanega, D., Yeates, D. K., Zaher, H., Zhang, G., Zhang, Z-Q., Zhou, H-Z. & Zhu, C-D., 2018, In : PLoS Biology. 16, 3, e2005075.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

The chloroplast genome sequence of bittersweet (Solanum dulcamara): plastid genome structure evolution in Solanaceae

Amiryousefi, A., Hyvönen, J. T. & Poczai, P., 2018, In : PLoS One. 13, 4, 23 p., e0196069.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

The first draft genome of Blasia pusilla using SMRT sequencing

Sablok, G., He, X., Miranto, M. J., Peltomaa, E., Bell, N., Paulin, L. G., Poczai, P. & Hyvönen, J. T., 2018, p. 74. 1 p.

Research output: Conference materialsPosterResearchpeer-review

File
2017

Action C.5 Milestone, Bryophyte ex situ conservation scheme

Laaka-Lindberg, S. & He, X., 2017, Helsinki: University of Helsinki. 12 p.

Research output: Book/ReportCommissioned reportProfessional

Complete chloroplast genome sequence of Coyote tobacco (Nicotiana attenuata, Solanaceae)

Poczai, P., Amiryousefi, A. & Hyvönen, J., 2017, In : Mitochondrial DNA Part B, Resources. 2, 2, p. 761-762 2 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

Contrasting patterns of postglacial range shifts between the northern and southern hemisphere in Herbertus (Herbertaceae, Marchantiophyta)

He, X. & Sun, Y., 2017, In : Systematics and Biodiversity. 15, 6, p. 541-551 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Description and phylogenetic investigation of Pogonatum shevockii N.E.Bell & Hyvönen (Polytrichaceae), a new East Asian species with a unique leaf morphology

Bell, N. E., Hyvonen, J., Yao, K-Y. & Ma, W-Z., 2017, In : Journal of Bryology. 39, 3, p. 235-246 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Emerging Roles and Landscape of Translating mRNAs in Plants

Sablok, G., Powell, J. J. & Kazan, K., 1 Sep 2017, In : Frontiers in plant science. 8, 9 p., 1443.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch

Salojärvi, J., Smolander, O-P., Nieminen, K., Rajaraman, S., Safronov, O., Safdari, P., Lamminmäki, A., Immanen, J., Lan, T., Tanskanen, J., Rastas, P., Amiryousefi, A., Jayaprakash, B., Kammonen, J. I., Hagqvist, R., Eswaran, G., Ahonen, V. H., Serra, J. A., Asiegbu, F. O., Barajas-Lopez, J. D. D. & 65 othersBlande, D., Blokhina, O., Blomster, T., Broholm, S., Brosche, M., Cui, F., Dardick, C., Ehonen, S. E., Elomaa, P., Escamez, S., Fagerstedt, K. V., Fujii, H., Gauthier, A., Gollan, P. J., Halimaa, P., Heino, P. I., Himanen, K., Hollender, C., Kangasjarvi, S., Kauppinen, L., Kelleher, C. T., Kontunen-Soppela, S., Koskinen, J. P., Kovalchuk, A., Karenlampi, S. O., Kärkönen, A. K., Lim, K-J., Leppälä, J., Macpherson, L., Mikola, J., Mouhu, K., Mähönen, A. P., Niinemets, U., Oksanen, E., Overmyer, K., Palva, E. T., Pazouki, L., Pennanen, V., Puhakainen, T., Poczai, P., Possen, B. J. H. M., Punkkinen, M., Rahikainen, M. M., Rousi, M., Ruonala, R., van der Schoot, C., Shapiguzov, A., Sierla, M., Sipilä, T. P., Sutela, S., Teeri, T. H., Tervahauta, A. I., Vaattovaara, A., Vahala, J., Vetchinnikova, L., Welling, A., Wrzaczek, M., Xu, E., Paulin, L. G., Schulman, A. H., Lascoux, M., Albert, V. A., Auvinen, P., Helariutta, Y. & Kangasjarvi, J., 8 May 2017, In : Nature Genetics. 49, 6, p. 904-912 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

Global biogeographic patterns in bipolar moss species

Biersma, E. M., Jackson, J. A., Hyvonen, J., Koskinen, S., Linse, K., Griffiths, H. & Convey, P., Jul 2017, In : Royal Society Open Science. 4, 7, 13 p., 170147.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

Rare sporophyte found in Europe for Herbertus sendtneri with a range expansion to Africa and Malesia

He, X. & Sun, Y., 6 Oct 2017, In : Phytotaxa. 324, 1, p. 42-50 9 p.

Research output: Contribution to journalArticleScientificpeer-review

The complete chloroplast genome sequence of the CAM epiphyte Spanish moss (Tillandsia usneoides, Bromeliaceae) and its comparative analysis

Poczai, P. & Hyvönen, J. T., 2017, In : PLoS One. 12, 11, 25 p., e0187199.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

The plastid genome of the invasive plant common ragweed (Ambrosia artemisiifolia, Asteraceae)

Amiryousefi, A., Hyvönen, J. & Poczai, P., 2017, In : Mitochondrial DNA Part B, Resources. 22, p. 753-754 2 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

The plastid genome of Vanillon (Vanilla pompona, Orchidaceae)

Amiryousefi, A., Hyvönen, J. & Poczai, P., 2017, In : Mitochondrial DNA Part B, Resources. 2, 2, p. 689-691 3 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

tRNA Derived smallRNAs: smallRNAs Repertoire Has Yet to Be Decoded in Plants

Sablok, G., Yang, K., Chen, R. & Wen, X., 25 Jul 2017, In : Frontiers in plant science. 8, 4 p., 1167.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
2016

Hitupihtisammalta etsimässä

Laaka-Lindberg, S., Ryömä, R. & He, X., Aug 2016, Metsän salainen elämä. Hallanaro, E-L., Kuusela, S., Juslén, A. & Ryttäri, T. (eds.). Helsinki: Gaudeamus Helsinki University Press, p. 126-137 12 p. 9

Research output: Chapter in Book/Report/Conference proceedingChapterGeneral public

Liverworts collected from Tuntsa, Eastern Finnish Lapland in 2016.

He, X., 2016, In : Bryobrotherella. 19, p. 44-51 7 p.

Research output: Contribution to journalArticleScientific

Metsäteiden maksasammalia Pohjois-Karjalassa ja huomioita aiemmin heimoon Jungermanniaceae kuuluneiden lajien taksonomiasta

Laaka-Lindberg, S., Räsänen, J. & He, X., 2016, In : Bryobrotherella. 19, p. 62–70 8 p.

Research output: Contribution to journalArticleScientific

New national and regional biological records for Finland 7. Contributions to Bryophyta and Marchantiophyta

Juutinen, R., Ulvinen, T., Syrjänen, K., Kypärä, T., Kuitunen, T., Parnela, A., Heikkilä, R., Suoknuuti, R., Marsh, T., Arkkio, H., He, X., Huttunen, S., Tahvanainen, T., Häyhä, T., Jääskeläinen, K. J. & Vainio, O., 2016, In : Memoranda Societatis pro Fauna et Flora Fennica. 92, p. 35–47 12 p.

Research output: Contribution to journalArticleScientific

Rusorahtusammal ja sen kaverit

Oldén, A., Ryömä, R., He, X. & Laaka-Lindberg, S., Aug 2016, Metsän salainen elämä. Hallanaro, E-L., Kuusela, S., Juslén, A. & Ryttäri, T. (eds.). Helsinki: Gaudeamus Helsinki University Press, p. 348-359 12 p. 26

Research output: Chapter in Book/Report/Conference proceedingChapterGeneral public

Will bryophytes survive in a warming world?

He, X., He, K. S. & Hyvönen, J., Apr 2016, In : Perspectives in Plant Ecology, Evolution and Systematics. 19, p. 49-60 12 p.

Research output: Contribution to journalArticleScientificpeer-review