Publications 2011 2019

  • 42 Article
  • 7 Conference contribution
  • 3 Commissioned report
  • 1 Master's thesis
2019

A comprehensive evaluation of predictive performance of 33 species distribution models at species and community levels

Norberg, A., Abrego Antia, N., Blanchet, F. G., Adler, F. R., Anderson, B. J., Anttila, J., Araújo, M. B., Dallas, T. A., Dunson, D., Elith, J., Foster, S., Fox, R., Franklin, J., Godsoe, W., Guisan, A., O'Hara, B., Hill, N. A., Holt, R. D., Hui, F. K. C., Husby, M. & 15 othersKålås, J. A., Lehikoinen, A., Luoto, M., Mod, H. K., Newell, G., Renner, I., Roslin, T. V., Soininen, J., Thuiller, W., Vanhatalo, J. P., Warton, D., White, M., Zimmermann, N. E., Gravel, D. & Ovaskainen, O. T., Aug 2019, In : Ecological Monographs. 89, 3, 24 p., 01370.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Additive multivariate Gaussian processes for joint species distribution modeling with heterogeneous data

Vanhatalo, J. P., Hartmann, M. & Veneranta, L., 2019, In : Bayesian analysis.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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A Gaussian process model and Bayesian variable selection for mapping function-valued quantitative traits with incomplete phenotype data

Vanhatalo, J. P., Li, Z. & Sillanpää, M., 2019, In : Bioinformatics.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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EcoMem: An R package for quantifying ecological memory

Itter, M. S., Vanhatalo, J. & Finley, A. O., 2019, In : Environmental Modelling & Software. 119, p. 305-308 4 p.

Research output: Contribution to journalArticleScientificpeer-review

Index-based approach for estimating vulnerability of Arctic biota to oil spills

Nevalainen, M. K., Vanhatalo, J. & Helle, I., 2019, (Accepted/In press) In : Ecosphere.

Research output: Contribution to journalArticleScientificpeer-review

Integrating experimental and distribution data to predict future species patterns

Kotta, J., Vanhatalo, J. P., Jänes, H., Orav-Kotta, H., Rugiu, L., Jormalainen, V., Bobsien, I., Viitasalo, M., Virtanen, E., Nyström Sandman, A., Isaeus, M., Leidenberger, S., Jonsson, P. R. & Johannesson, K., 12 Feb 2019, In : Scientific Reports. 9, 14 p., 1821.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Laplace approximation and natural gradient for Gaussian process regression with heteroscedastic Student-t model

Hartmann, M. & Vanhatalo, J., Jul 2019, In : Statistics and Computing. 29, 4, p. 753–773 21 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Non-stationary Gaussian models with physical barriers

Bakka, H., Vanhatalo, J., Illian, J. B., Simpson, D. & Rue, H., Mar 2019, In : Spatial statistics. 29, p. 268-288 21 p.

Research output: Contribution to journalArticleScientificpeer-review

2018

Correcting Boundary Over-Exploration Deficiencies In Bayesian Optimization With Virtual Derivative Sign Observations

Siivola, E., Vehtari, A., Vanhatalo, J., Gonzalez, J. & Andersen, M., Nov 2018, 2018 IEEE 28th International Workshop on Machine Learning for Signal Processing (MLSP). Pustelnik, N., Ma, Z., Tan, ZH. & Larsen, J. (eds.). IEEE, Vol. 28. 6 p. (IEEE International Workshop on Machine Learning for Signal Processing).

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Estimating the acute impacts of Arctic marine oil spills using expert elicitation

Nevalainen, M., Helle, I. & Vanhatalo, J., Jun 2018, In : Marine Pollution Bulletin. 131, p. 782-792 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Hierarchical Bayesian model reveals the distributional shifts of Arctic marine mammals

Mäkinen, J. & Vanhatalo, J., Oct 2018, In : Diversity and Distributions. 24, 10, p. 1381-1394 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Inferring dispersal across a fragmented landscape using reconstructed families in the Glanville fritillary butterfly

Fountain, T., Husby, A., Nonaka, E., DiLeo, M., Korhonen, J. H., Rastas, P., Schulz, T. M., Saastamoinen, M. A. K. & Hanski, I. A., Mar 2018, In : Evolutionary Applications. 11, 3, p. 287-297 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Predicting local ice loads on ship bow as a function of ice and operational conditions in the Southern Sea

Kotilainen, M., Vanhatalo, J., Suominen, M. & Kujala, P., 2 Apr 2018, In : Ship technology research. 65, 2, p. 87-101 15 p.

Research output: Contribution to journalArticleScientificpeer-review

2017

Bayesian inference for generalized extreme value distributions via Hamiltonian Monte Carlo

Hartmann, M. & Ehlers, R. S., 2017, In : Communications in Statistics: Simulation and Computation. 46, 7, p. 5285-5302 18 p.

Research output: Contribution to journalArticleScientificpeer-review

Ecological and genetic basis of metapopulation persistence of the Glanville fritillary butterfly in fragmented landscapes

Hanski, I., Schulz, T., Wong, S. C., Ahola, V., Ruokolainen, A. & Ojanen, S. P., 17 Feb 2017, In : Nature Communications. 8, 11 p., 14504.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Gaussian processs framework for temporal dependence and discrepancy functions in Ricker-type population growth models

Hartmann, M., Hosack, G. R., Hillary, R. M. & Vanhatalo, J. P., Sep 2017, In : Annals of Applied Statistics. 11, 3, p. 1375-1402 28 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Impacts of eutrophication and oil spills on the Gulf of Finland herring stock

Rahikainen, M. K., Hoviniemi, K-M., Mäntyniemi, S. H. P., Vanhatalo, J. P., Helle, S. I., Lehtiniemi, M., Pönni, J. & Kuikka, O. S., 2017, In : Canadian Journal of Fisheries and Aquatic Sciences. 74, 8, p. 1218-1232 15 p.

Research output: Contribution to journalArticleScientificpeer-review

Modeling the spatial distribution of larval fish abundance provides essential information for management

Kallasvuo, M., Vanhatalo, J. & Veneranta, L., May 2017, In : Canadian Journal of Fisheries and Aquatic Sciences. 74, 5, p. 636-649 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Predicting ice-induced load amplitudes on ship bow conditional on ice thickness and ship speed in the Baltic Sea

Kotilainen, M., Vanhatalo, J. P., Suominen, M. & Kujala, P., Mar 2017, In : Cold Regions Science and Technology. 135, p. 116–126 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Preparing for the unprecedented - Towards quantitative oil risk assessment in the Arctic marine areas

Nevalainen, M., Helle, I. & Vanhatalo, J., 15 Jan 2017, In : Marine Pollution Bulletin. 114, 1, p. 90-101 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Spatiotemporal modelling of crown-of-thorns starfish outbreaks on the Great Barrier Reef to inform control strategies

Vanhatalo, J. P., Hosack, G. & Sweatman, H., Jan 2017, In : Journal of Applied Ecology. 54, 1, p. 188-197

Research output: Contribution to journalArticleScientificpeer-review

Open Access
2016

Detailed temperature mapping-Warming characterizes archipelago zones

Veneranta, L., Vanhatalo, J. & Urho, L., 5 Dec 2016, In : Estuarine, Coastal and Shelf Science. 182, p. 123-135 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Downscaling and extrapolating dynamic seasonal marine forecasts for coastal ocean users

Vanhatalo, J. P., Hobday, A. J., Little, L. R. & Spillman, C. M., Apr 2016, In : Ocean Modelling. 100, p. 20-30 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Hydrographic responses to regional covariates across the Kara Sea

Mäkinen, J. A-E. & Vanhatalo, J. P., Dec 2016, In : Journal of Geophysical Research : Oceans. 121, 12, p. 8872-8887 16 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Karanmeren ravintoverkot - hajanaista tietoa ja valikoituja veikkauksia

Nevalainen, M. K., 2016, In : Natura. 53, 2, p. 40-42 3 p.

Research output: Contribution to journalArticleProfessional

Open Access
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2015

Education of maritime doctoral students as part of international university network

Kujala, P., Veitch, B., Ehlers, S., Leira, B., Khan, F. & Vanhatalo, J., 10 Dec 2015, International Conference on Education and Professional Development of Engineers in the Maritime Industry 2015. London: The Royal Institution of Naval Architects, p. 59-65 7 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientific

General state-space population dynamics model for Bayesian stock assessment

Mäntyniemi, S. H. P., Whitlock, R. E., Perälä, T. A., Blomstedt, P. A., Vanhatalo, J. P., Rincón, M. M., Kuparinen, A. K., Pulkkinen, H. P. & Kuikka, O. S., 7 Aug 2015, In : ICES Journal of Marine Science. 72, 8, p. 2209-2222 14 p.

Research output: Contribution to journalArticleScientificpeer-review

2014

By-Catch of Grey Seals (Halichoerus grypus) in Baltic Fisheries-A Bayesian Analysis of Interview Survey

Vanhatalo, J., Vetemaa, M., Herrero, A., Aho, T. & Tiilikainen, R., 2014, In : PLoS One. 9, 11, 16 p., 113836.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Experiences in Bayesian Inference in Baltic Salmon Management

Kuikka, S., Vanhatalo, J., Mäntyniemi, S., Pulkkinen, H. & Corander, J., May 2014, In : Statistical Science. 29, 1, p. 42-49

Research output: Contribution to journalArticleScientificpeer-review

Scenario based risk management for arctic shipping and operations

Ehlers, S., Kujula, P., Veitch, B., Khan, F. & Vanhatalo, J., 8 Jun 2014, ASME 2014 33rd International Conference on Ocean, Offshore and Arctic Engineering: Polar and Arctic Science and Technology. California, USA: The American Society of Mechanical Engineers, Vol. 10. 8 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Toward Integrative Management Advice of Water Quality, Oil Spills, and Fishery in the Gulf of Finland: A Bayesian Approach

Rahikainen, M., Helle, I., Haapasaari, P., Oinonen, S., Kuikka, S., Vanhatalo, J., Mantyniemi, S. & Hoviniemi, K-M., Feb 2014, In : Ambio. 43, 1, p. 115-123 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Vain ongelmayksilöihin kohdistuva hylkeenmetsästys vähentää kalavahinkoja

Ahola, M., Jounela, P., Kauhala, K. & Vanhatalo, J., 20 Dec 2014, In : Turun Sanomat. 2014

Research output: Contribution to journalArticleGeneral public

2013

Experiences in developing risk analysis tools for oil spills in the Gulf of Finland – how to create learning systems to oil spill risk analysis?

Kuikka, S., Helle, I., Lehikoinen, A., Rahikainen, M., Vanhatalo, J., Mäntyniemi, S. & Hänninen, M., 2013, Asian Simulation and Modeling 2013 (ASIMMOD 2013). Bangkok: Centre of Excellence in Mathematics (CEM), p. 19-25

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

GPstuff: Bayesian Modeling with Gaussian Processes

Vanhatalo, J., Riihimäki, J., Hartikainen, J., Jylänki, P., Tolvanen, V. & Vehtari, A., Apr 2013, In : Journal of Machine Learning Research. 14, p. 1175-1179 5 p.

Research output: Contribution to journalArticleScientificpeer-review

Havslekande sikens och siklöjans yngelproduktionsområden

Hudd, R., Veneranta, L. & Vanhatalo, J., Apr 2013, Helsinki: Riista- ja kalatalouden tutkimuslaitos. 38 p. (Vilt- och fiskeriforskningsinstitutes arbetsrapporter; vol. 2013, no. 7)

Research output: Book/ReportCommissioned reportProfessional

Merikutuisen siian ja muikun poikastuotantoalueet

Veneranta, L., Hudd, R. & Vanhatalo, J., Apr 2013, Helsinki: Riista- ja kalatalouden tutkimuslaitos. 40 p. (RKTL:n työraportteja; vol. 2013, no. 8)

Research output: Book/ReportCommissioned reportProfessional

Probabilistic Ecosystem Model for Predicting the Nutrient Concentrations in the Gulf of Finland under Diverse Management Actions

Vanhatalo, J., Tuomi, L., Inkala, A., Helle, I. & Pitkänen, H., 2013, In : Environmental Science & Technology. 47, 1, p. 334–341 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Reproduction areas of sea-spawning coregonids reflect the environment in shallow coastal waters

Veneranta, L., Hudd, R. & Vanhatalo, J., 12 Mar 2013, In : Marine Ecology. Progress Series. 477, p. 231-250 20 p.

Research output: Contribution to journalArticleScientificpeer-review

Siiat tarvitsevat puhtaita matalikkoja

Veneranta, L., Hudd, R. & Vanhatalo, J., Apr 2013, In : Suomen kalastuslehti. 2013, 4, p. 8-10

Research output: Contribution to journalArticleProfessional

2012

Bayesian Modeling with Gaussian Processes using the MATLAB Toolbox GPstuff (v3.4)

Vanhatalo, J., Riihimäki, J., Hartikainen, J., Jylänki, P., Tolvanen, V. & Vehtari, A., 5 Oct 2012, 58 p.

Research output: Book/ReportCommissioned reportProfessional

Bayesian spatial multispecies modelling to assess pelagic fish stocks from acoustic- and trawl-survey data

Juntunen, T., Vanhatalo, J., Peltonen, H. & Mäntyniemi, S., 2012, In : ICES Journal of Marine Science. 69, 1, p. 95-104

Research output: Contribution to journalArticleScientificpeer-review

Integrated Bayesian risk analysis of ecosystem management in the Gulf of Finland, the Baltic Sea: How to do it?

Helle, I., Vanhatalo, J., Rahikainen, M., Mäntyniemi, S. & Kuikka, S., 2012, Joint ICES/PICES Session I Multidisciplinary perspectives in the use (and misuse) of science and scientific advice in Marine Spatial Planning. International Council for the Exploration of the Sea, 16 p. (ICES CM; vol. I, no. 04).

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientific

Itämeren suojelussa tarvitaan numeroita

Vanhatalo, J., Helle, I. & Mäntyniemi, S., 9 Feb 2012, In : Helsingin Sanomat.

Research output: Contribution to journalArticleGeneral public

Species distribution modeling with Gaussian processes: A case study with the youngest stages of sea spawning whitefish (Coregonus lavaretus L. s.l.) larvae

Vanhatalo, J., Veneranta, L. & Hudd, R., 2012, In : Ecological Modelling. 228, p. 49-58 10 p.

Research output: Contribution to journalArticleScientificpeer-review

The Value of Reducing Eutrophication in European Marine Areas - A Bayesian Meta-analysis

Ahtiainen, H. & Vanhatalo, J., 2012, In : Ecological Economics. 83, p. 1-10 10 p.

Research output: Contribution to journalArticleScientificpeer-review

2011

Additive Gaussian process model to predict the spatial presence of the youngest stages of sea spawning whitefish (Coregonus lavaretus L. s.l.) larvae

Vanhatalo, J., Veneranta, L. & Hudd, R., Sep 2011, ICES Annual Science Conference 2011. International Council for the Exploration of the Sea, 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientific