Faculty of Biological and Environmental Sciences

  • Viikinkaari 9

    HELSINKI

    Finland

Publications 1966 2020

2019

Social media data for conservation science: A methodological overview

Toivonen, T., Heikinheimo, V., Fink, C., Hausmann, A., Hiippala, T., Järv, O., Tenkanen, H. & Di Minin, E., May 2019, In : Biological Conservation. 233, p. 298-315 18 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Open Access
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Socio-cultural values as a dimension of fisheries governance: The cases of Baltic salmon and herring

Ignatius, S. H. M., Delaney, A. & Haapasaari, P. E., Apr 2019, In : Environmental Science & Policy. 94, p. 1-8 8 p.

Research output: Contribution to journalArticleScientificpeer-review

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Soil exposure modifies the gut microbiota and supports immune tolerance in a mouse model

Ottman, N., Ruokolainen, L., Suomalainen, A., Sinkko, H., Karisola, P., Lehtimaki, J., Lehto, M., Hanski, I., Alenius, H. & Fyhrquist, N., Mar 2019, In : Journal of Allergy and Clinical Immunology. 143, 3, p. 1198-1206.e12 21 p.

Research output: Contribution to journalArticleScientificpeer-review

Soil fertility in boreal forest relates to root-driven nitrogen retention and carbon sequestration in the mor layer

Kyaschenko, J., Ovaskainen, O., Ekblad, A., Hagenbo, A., Karltun, E., Clemmensen, K. E. & Lindahl, B. D., Feb 2019, In : New Phytologist. 221, 3, p. 1492-1502 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Soil nematode abundance and functional group composition at a global scale

van den Hoogen, J., Geisen, S., Routh, D., Ferris, H., Traunspurger, W., Wardle, D. A., de Goede, R. G. M., Adams, B. J., Ahmad, W., Andriuzzi, W. S., Bardgett, R. D., Bonkowski, M., Campos-Herrera, R., Cares, J. E., Caruso, T., Caixeta, L. D. B., Chen, X., Costa, S. R., Creamer, R., da Cunha Castro, J. M. & 50 othersDam, M., Djigal, D., Escuer, M., Griffiths, B. S., Gutierrez, C., Hohberg, K., Kalinkina, D., Kardol, P., Kergunteuil, A., Korthals, G., Krashevska, V., Kudrin, A. A., Li, Q., Liang, W., Magilton, M., Marais, M., Rodriguez Martin, J. A., Matveeva, E., Mayad, E. H., Mulder, C., Mullin, P., Neilson, R., Nguyen, T. A. D., Nielsen, U. N., Okada, H., Palomares Rius, J. E., Pan, K., Peneva, V., Pellissier, L., Pereira da Silva, J. C., Pitteloud, C., Powers, T. O., Powers, K., Quist, C. W., Rasmann, S., Sanchez Moreno, S., Scheu, S., Setala, H., Sushchuk, A., Tiunov, A. V., Trap, J., van der Putten, W., Vestergard, M., Villenave, C., Waeyenberge, L., Wall, D. H., Wilschut, R., Wright, D. G., Yang, J. & Crowther, T. W., 8 Aug 2019, In : Nature. 572, 7768, p. 194-+ 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Sokerin biokemiaa pitää tarkentaa

Translated title of the contribution: Sugar biochemistry needs to be revisedHaltia, J. T., 27 Mar 2019, In : Tiede. 39, 4/2019, p. 6 1 p.

Research output: Contribution to journalComment/debateGeneral public

Solar UV-A radiation and blue light enhance tree leaf litter decomposition in a temperate forest

Pieristè, M., Chauvat, M., Kotilainen, T. K., Jones, A. G., Aubert, M., Robson, T. M. & Forey, E., 30 Jul 2019, In : Oecologia.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Spatial Modeling of Local-Scale Biogenic and Anthropogenic Carbon Dioxide Emissions in Helsinki

Jarvi, L., Havu, M., Ward, H. C., Bellucco, V., McFadden, J. P., Toivonen, T., Heikinheimo, V., Kolari, P., Riikonen, A. & Grimmond, C. S. B., 16 Aug 2019, In : Journal of Geophysical Research : Atmospheres. 124, 15, p. 8363-8384 22 p.

Research output: Contribution to journalArticleScientificpeer-review

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Spatio-temporal impact of salinated mine water on Lake Jormasjärvi, Finland

Leppänen, J. J., Luoto, T. P. & Weckström, J., Apr 2019, In : Environmental Pollution. 247, p. 1078-1088 11 p.

Research output: Contribution to journalArticleScientificpeer-review

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Spatio-temporal scaling of biodiversity in acoustic tropical bird communities

de Camargo, U., Roslin, T. & Ovaskainen, O., 9 Sep 2019, In : Ecopgraphy. 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Special Section: Advancing the Role of Cities in Climate Governance - Promise, Limits and Politics

van der Heijden, J., Patterson, J., Juhola, S. K. & Wolfram, M., 2019, In : Journal of Environmental Planning and Management. 62, 3, p. 365-373 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access

Sphingolipid biosynthesis modulates plasmodesmal ultrastructure and phloem unloading

Yan, D., Yadav, S., Paterlini, A., Nicolas, W. J., Petit, J. D., Brocard, L., Belevich, I., Grison, M. S., Vaten, A., Karami, L., El-Showk, S., Lee, J-Y., Murawska, G. M., Mortimer, J., Knoblauch, M., Jokitalo, E., Markham, J. E., Bayer, E. M. & Helariutta, Y., 10 Jun 2019, In : Nature plants. 5, 6, p. 604-615 12 p.

Research output: Contribution to journalArticleScientificpeer-review

SPIKEPIPE: A metagenomic pipeline for the accurate quantification of eukaryotic species occurrences and intraspecific abundance change using DNA barcodes or mitogenomes

Ji, Y., Huotari, T., Roslin, T., Schmidt, N. M., Wang, J., Yu, D. W. & Ovaskainen, O., 7 Aug 2019, In : Molecular Ecology Resources. 12 p.

Research output: Contribution to journalArticleScientificpeer-review

STABILITYSOFT: a new online program to calculate parametric and non-parametric stability statistics for crop traits

Pour-Aboughadareh, A., Yousefian, M., Moradkhani, H., Poczai, P. & Siddique, K. HM., 15 Jan 2019, In : Applications in Plant Sciences. 7, 1, 6 p., 1211.

Research output: Contribution to journalEditorialScientificpeer-review

Open Access
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Stress responses upon starvation and exposure to bacteria in the ant Formica exsecta

Stucki, D., Freitak, D., Bos, N. & Sundstrom, L., 18 Feb 2019, In : PeerJ. 7, 17 p., 6428.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Structural basis for assembly of vertical single β-barrel viruses

Santos-Perez, I., Charro, D., Gil-Carton, D., Azkargorta, M., Elortza, F., Bamford, D. H., Oksanen, H. M. & Abrescia, N. G. A., 12 Mar 2019, In : Nature Communications. 10, 9 p., 1184.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Structural comparison strengthens the higher-order classification of proteases related to chymotrypsin

Mönttinen, H. A. M., Ravantti, J. & Poranen, M., 17 May 2019, In : PLoS One. 14, 5, 16 p., 0216659.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Structure of the UspA1 protein fragment from Moraxella catarrhalis responsible for C3d binding

Mikula, K. M., Kolodziejczyk, R. & Goldman, A., 7 Aug 2019, In : Journal of Structural Biology.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Sukkulamadot

Translated title of the contribution: NematodesSetälä, H., 2019, Elämää maan kätköissä. Huhta, V. & Hallanaro, E-L. (eds.). Tallinna: Gaudeamus, p. 211-226 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapterGeneral public

Sunagoke Moss (Racomitrium japonicum) Used for Greening Roofs Is Severely Damaged by Sclerotium delphinii and Protected by a Putative Bacillus amyloliquefaciens Isolate

Tamura, M., Tanabe, M., Valkonen, J. P. T. & Akita, M., 28 Feb 2019, In : Frontiers in Microbiology. 10, 10 p., 372.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Suoliston kantasolut

Andersson, S., Luopajärvi, K., Pentinmikko, N. & Katajisto, P., 2019, In : Duodecim. 135, 7, p. 647-653 7 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Systematic evidence synthesis as part of a larger process: a response to comments on Berger-Tal et al.

Berger-Tal, O., Greggor, A. L., Macura, B., Adams, C. A., Blumenthal, A., Bouskila, A., Candolin, U., Doran, C., Fernandez-Juricic, E., Gotanda, K. M., Price, C., Putman, B. J., Segoli, M., Snijders, L., Wong, B. B. M. & Blumstein, D. T., 2019, In : Behavioral Ecology. 30, 1, p. 14-15 2 p.

Research output: Contribution to journalComment/debateScientific

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Systematic reviews and maps as tools for applying behavioral ecology to management and policy

Berger-Tal, O., Greggor, A., Macura, B., Adams, C. A., Blumenthal, A., Bouskila, A., Candolin, U., Doran, C., Gotanda, K., Price, C., Putman, B., Segoli, M., Snijders, L., Wong, B. B. M. & Blumstein, D. T., 4 Mar 2019, In : Behavioral Ecology. 30, 1, p. 1-8 8 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Open Access
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Tail colour signals performance in blue tit nestlings

Class, B., Kluen, E. & Brommer, J. E., Sep 2019, In : Journal of Evolutionary Biology. 32, 9, p. 913-920 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Tape-stripping alters the microbe-host correlations in mouse skin

Karisola, P., Suomalainen, A., Fortino, V., Ottman, N., Vendelin, J., Wolff, H. J., Ruokolainen, L., Greco, D., Fyhrquist, N. & Alenius, H., Mar 2019, In : Allergy : European journal of allergy and clinical immunology. 74, 3, p. 617-621 5 p.

Research output: Contribution to journalLetterScientific

Teaching and learning using technology – Enhanced and mismatched

Folger, P. D. A., Merenmies, J. & Pyörälä, E., 24 Aug 2019.

Research output: Conference materialsPaperResearchpeer-review

Technical and social knowledge discontinuities in the multi-objective management of private forests in Finland

Pynnönen, S., Salomaa, A., Rantala, S. & Hujala, T., 21 Aug 2019, In : Land Use Policy. 88

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Technical note: Interferences of volatile organic compounds (VOCs) on methane concentration measurements

Kohl, L., Koskinen, M., Rissanen, K., Haikarainen, I., Polvinen, T. H., Hellén, H. & Pihlatie, M., 4 Sep 2019, In : Biogeosciences. 16, 17, p. 3319-3332 14 p.

Research output: Contribution to journalArticleScientificpeer-review

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Temperature change as a driver of spatial patterns and long‐term trends in chironomid (Insecta: Diptera) diversity

Engels, S., Medeiros, A., Axford, Y., Brooks, S. J., Heiri, O., Luoto, T. P., Nazarova, L., Porinchu, D. F., Quinlan, R. & Self, A. E., 9 Oct 2019, (Accepted/In press) In : Global Change Biology.

Research output: Contribution to journalArticleScientificpeer-review

Temporal and Spatial Variation in Scots Pine Resin Pressure and Composition

Rissanen, K., Hölttä, T., Barreira, L. F. M., Hyttinen, N., Kurtén, T. & Bäck, J., 17 May 2019, In : Frontiers in Forests and Global Change. 2, 14 p., 23.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Temporally replicated DNA methylation patterns in great tit using reduced representation bisulfite sequencing

Mäkinen, H., Viitaniemi, H. M., Visser, M. E., Verhagen, I., van Oers, K. & Husby, A., 24 Jul 2019, In : Scientific data . 6, 7 p., 136.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Temporal patterns of phytoplankton phenology across high latitude lakes unveiled by long-term time series of satellite data

Maeda, E. E., Lisboa, F., Kaikkonen, L. M., Koponen, S., Kallio, K., Brotas, V. & Kuikka, O. S., Feb 2019, In : Remote Sensing of Environment. 221, p. 609-620 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Temporal sampling and abundance measurement influences support for occupancy-abundance relationships

Dallas, T. A., Poyry, J., Leinonen, R. & Ovaskainen, O., 28 Sep 2019, In : Journal of Biogeography. 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Temporal variation in indoor transfer of dirt-associated environmental bacteria in agricultural and urban areas

Parajuli, A., Hui, N., Puhakka, R., Grönroos, M., Selonen, V. A. O., Roslund, M., Vari, H., Siter, N., Nurminen, N., Oikarinen, S., Laitinen, O., Rajaniemi, J., Hyöty, H. & Sinkkonen, A., 2019, In : Environment International. 132, 105069

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Termite mound architecture regulates nest temperature and correlates with species identities of symbiotic fungi.

Vesala, R., Harjuntausta, A., Hakkarainen, A., Rönnholm, P., Pellikka, P. & Rikkinen, J., 16 Jan 2019, In : PeerJ. 6, 20 p., 6237.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Terrestrial organic matter quantity or decomposition state does not compensate for its poor nutritional quality for Daphnia

Hiltunen, M., Peltomaa, E., Brett, M. T., Aalto, S. L., Strandberg, U., Oudenampsen, J., Burgwal, L. M. & Taipale, S. J., Oct 2019, In : Freshwater Biology. 64, 10, p. 1769-1786 18 p.

Research output: Contribution to journalArticleScientificpeer-review

Testing the feasibility of assisted migration as an ex situ conservation tool on selected threatened bryophytes

Laaka-Lindberg, S. & He, X., 2019, (In preparation) In : Biological Conservation.

Research output: Contribution to journalArticleScientificpeer-review

The antecedents of place attachment in the context of an Australian national park

van Riper, C. J., Yoon, J. I., Kyle, G. T., Wallen, K. E., Landon, A. C. & Raymond, C., Feb 2019, In : Journal of Environmental Psychology. 61, p. 1-9 9 p.

Research output: Contribution to journalArticleScientificpeer-review

The Art of Mushroom Foraging: A Phenomenological Inquiry

Kaaronen, R. O., 2019, The Side View Journal. Robbert, A. (ed.). 1 ed. Bay Area, California: The Side View Press, Vol. 1. p. 22-26 5 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientific

The art of note taking with mobile devices in medical education

Pyörälä, E., Mäenpää, S., Heinonen, L., Folger, D., Masalin, T. & Hervonen, H., 2 Apr 2019, In : BMC Medical Education. 19, 10 p., 96.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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The avocado genome informs deep angiosperm phylogeny, highlights introgressive hybridization, and reveals pathogen-influenced gene space adaptation

Rendón-Anaya, M., Ibarra-Laclette, E., Méndez-Bravo, A., Lan, T., Zheng, C., Carretero-Paulet, L., Perez-Torres, C. A., Chacón-López, A., Hernandez-Guzmán, G., Chang, T-H., Farr, K. M., Barbazuk, W. B., Chamala, S., Mutwil, M., Shivhare, D., Alvarez-Ponce, D., Mitter, N., Hayward, A., Fletcher, S., Rozas, J. & 9 othersSánchez Gracia, A., Kuhn, D., Barrientos-Priego, A. F., Salojärvi, J., Librado, P., Sankoff, D., Herrera-Estrella, A., Albert, V. A. & Herrera-Estrella, L., 20 Aug 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 34

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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The beaver facilitates species richness and abundance of terrestrial and semi-aquatic mammals

Nummi, P., Liao, W., Huet, O., Scarpulla, E. & Sundell, J., 2019, In : Global Ecology and Conservation. 20, 10 p.

Research output: Contribution to journalArticleScientificpeer-review

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The biogeography and ecology of common diatom species in the northern North Atlantic, and their implications for paleoceanographic reconstructions

Oksman, M., Juggins, S., Miettinen, A. I., Witkowski, A. & Weckström, K., Apr 2019, In : Marine Micropaleontology. 148, p. 1-28 28 p.

Research output: Contribution to journalArticleScientificpeer-review

The Chromosome-Level Genome Assembly of European Grayling Reveals Aspects of a Unique Genome Evolution Process Within Salmonids

Sävilammi, T., Primmer, C. R., Varadharajan, S., Guyomard, R., Guiguen, Y., Sandve, S. R., Vollestad, L. A., Papakostas, S. & Lien, S., May 2019, In : G3 - Genes genomes genetics. 9, 5, p. 1283-1294 12 p.

Research output: Contribution to journalArticleScientificpeer-review

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The coevolutionary biology of brood parasitism: a call for integration

Thorogood, R., Spottiswoode, C. N., Portugal, S. J. & Gloag, R., 11 Feb 2019, In : Philosophical Transactions of the Royal Society. Biological Sciences. 374, 1769, 7 p., 20180190.

Research output: Contribution to journalEditorialScientificpeer-review

The contributions of Indigenous Peoples and local communities to ecological restoration

Reyes-García, V., Fernandez-Llamazares, A., McElwee, P., Molnar, Z., Öllerer, K., Wilson, S. J. & Brondizio, E. S., Jan 2019, In : Restoration Ecology. 27, 1, p. 3-8 6 p.

Research output: Contribution to journalArticleScientificpeer-review

The diversity of benthic diatoms affects ecosystem productivity in heterogeneous coastal environments

Virta, L., Gammal, J., Järnström, M., Bernard, G., Soininen, J., Norkko, J. & Norkko, A., 8 Jul 2019, In : Ecology. 100, 9, p. e02765 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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