Faculty of Biological and Environmental Sciences

  • Viikinkaari 9

    HELSINKI

    Finland

Publications 1966 2020

2018

Abrupt high-latitude climate events and decoupled seasonal trends during the Eemian

Salonen, J. S., Helmens, K. F., Brendryen, J., Kuosmanen, N., Väliranta, M., Goring, S., Korpela, M., Kylander, M., Philip, A., Plikk, A., Renssen, H. & Luoto, M., 20 Jul 2018, In : Nature Communications. 9, 10 p., 2851.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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A Caribbean epiphyte community preserved in Miocene Dominican amber

Kaasalainen, U. S., Heinrichs, J., Renner, M., Hedenäs, L., Schäfer-Verwimp, A., Lee, G., Ignatov, M., Rikkinen, J. & Schmidt, A., Jan 2018, In : Earth and Environmental Science Transactions of the Royal Society of Edinburgh. 107, 2-3, p. 321-331 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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A Case Study of Street Tree Soil Aeration in Two Different Soil Types

Kämäräinen, A. S., Riikonen, A., Simojoki, A. J. & Lindén, L., 2 Jul 2018, In : Arboriculture and Urban Forestry. 44, 4, p. 174-184 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Accounting for heteroscedasticity and censoring in chromosome partitioning analyses

Kemppainen, P. & Husby, A., Dec 2018, In : Evolution Letters. 2, 6, p. 599-609 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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A cellular passage to the root interior

El-Showk, S. & Mahonen, A. P., 22 Mar 2018, In : Nature. 555, 7697, p. 454-455 2 p.

Research output: Contribution to journalEditorialScientificpeer-review

A Century of Legacy Phosphorus Dynamics in a Large Drainage Basin

McCrackin, M. L., Muller-Karulis, B., Gustafsson, B. G., Howarth, R. W., Humborg, C., Svanbäck, A. & Swaney, D. P., Jul 2018, In : Global Biogeochemical Cycles. 32, 7, p. 1107-1122 16 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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A complex genomic locus drives mtDNA replicase POLG expression to its disease-related nervous system regions

Nikkanen, J., Landoni, J. C., Balboa, D., Haugas, M., Partanen, J., Paetau, A., Isohanni, P., Brilhante, V. & Suomalainen, A., Jan 2018, In : EMBO molecular medicine. 10, 1, p. 13-21 9 p.

Research output: Contribution to journalArticleScientificpeer-review

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Actinobacteria associated with Chinaberry tree are diverse and show antimicrobial activity

Zhao, K., Li, J., Shen, M., Chen, Q., Liu, M., Ao, X., Liao, D., Gu, Y., Xu, K., Ma, M., Yu, X., Xiang, Q., Chen, J., Zhang, X. & Penttinen, P., 23 Jul 2018, In : Scientific Reports. 8, 10 p., 11103.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Actinobacteria associated with Glycyrrhiza inflata Bat. are diverse and have plant growth promoting and antimicrobial activity

Zhao, K., Li, J., Zhang, X., Chen, Q., Liu, M., Ao, X., Gu, Y., Liao, D., Xu, K., Ma, M., Yu, X., Xiang, Q., Chen, J., Zhang, X. & Penttinen, P., 12 Sep 2018, In : Scientific Reports. 8, 13 p., 13661.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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ADA2 deficiency: Clonal lymphoproliferation in a subset of patients

Trotta, L., Martelius, T., Siitonen, T., Hautala, T., Hämäläinen, S., Juntti, H., Taskinen, M., Ilander, M., Andersson, E. I., Zavialov, A., Kaustio, M., Keski-Filppula, R., Hershfield, M., Mustjoki, S., Tapiainen, T., Seppänen, M. & Saarela, J., Apr 2018, In : Journal of Allergy and Clinical Immunology. 141, 4, p. 1534-+ 12 p.

Research output: Contribution to journalLetterScientificpeer-review

Adaptation to environmental light conditions in mysid shrimps

Viljanen, M. L. M., 2018, 62 p.

Research output: ThesisDoctoral ThesisCollection of Articles

Open Access

Adaptation to fluctuations in temperature by nine species of bacteria

Saarinen, K., Laakso, J., Lindström, L. & Ketola, T., Mar 2018, In : Ecology and Evolution. 8, 5, p. 2901-2910 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Adaptedness of Behavior

Candolin, U., 26 May 2018, Encyclopedia of Animal Cognition and Behavior. Vonk, J. & Shackelford, T. K. (eds.). Cham: Springer International Publishing AG

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

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Addressing the Legacy of Colonialism: Seminar report

Hakala, E. S., 3 May 2018, Helsinki: Historians Without Borders. (HWB Reports; no. 2)

Research output: Book/ReportCommissioned reportProfessional

Open Access
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Affimer proteins inhibit immune complex binding to Fc gamma RIIIa with high specificity through competitive and allosteric modes of action

Robinson, J. I., Baxter, E. W., Owen, R. L., Thomsen, M., Tomlinson, D. C., Waterhouse, M. P., Win, S. J., Nettleship, J. E., Tiede, C., Foster, R. J., Owens, R. J., Fishwick, C. W. G., Harris, S. A., Goldman, A., McPherson, M. J. & Morgan, A. W., 2 Jan 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 1, p. E72-E81 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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A Gene Encoding Scots Pine Antimicrobial Protein Sp-AMP2 (PR-19) Confers Increased Tolerance against Botrytis cinerea in Transgenic Tobacco

Jaber, E., Kovalchuk, A., Raffaello, T., Keriö, S., Teeri, T. & Asiegbu, F. O., Jan 2018, In : Forests. 9, 1, 15 p., 10.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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A Genome-Wide Association Study for Host Resistance to Ostreid Herpesvirus in Pacific Oysters (Crassostrea gigas)

Gutierrez, A. P., Bean, T. P., Hooper, C., Stenton, C. A., Sanders, M. B., Paley, R. K., Rastas, P., Bryrom, M., Matika, O. & Houston, R. D., Apr 2018, In : G3 - Genes genomes genetics. 8, 4, p. 1273-1280 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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A high-throughput method for orthophosphate determination of thermostable membrane-bound pyrophosphatase activity

Vidilaseris, K., Kellosalo, J. & Goldman, A., 14 Feb 2018, In : Analytical Methods. 10, 6, p. 646-651 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Airborne Hyperspectral Evaluation of Maximum Gross Photosynthesis, Gravimetric Water Content, and CO2 Uptake Efficiency of the Mer Bleue Ombrotrophic Peatland

Arroyo-Mora, J. P., Kalacska, M., Soffer, R. J., Moore, T. R., Roulet, N. T., Juutinen, S., Ifimov, G., Leblanc, G. & Inamdar, D., Apr 2018, In : Remote Sensing. 10, 4, 20 p., 565.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Allo-parental care in Damaraland mole-rats is female biased and age dependent, though independent of testosterone levels

Zöttl, M., Vullioud, P., Goddard, K., Torrents-Ticó, M., Gaynor, D., Bennett, N. C. & Clutton-Brock, T., 1 Sep 2018, In : Physiology & Behavior. 193, Part A, p. 149-153 5 p.

Research output: Contribution to journalArticleScientificpeer-review

Alterations of autophagy in the peripheral neuropathy Charcot-Marie-Tooth type 2B

Colecchia, D., Stasi, M., Leonardi, M., Manganelli, F., Nolano, M., Veneziani, BM., Santoro, L., Eskelinen, E-L., Chiariello, M. & Bucci, C., 2018, In : Autophagy. 14, 6, p. 930-941 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Altering the 3'UTR to increase endogenous GDNF and BDNF expression

Mätlik, K., 2018, Helsinki: Helsingin yliopisto.

Research output: ThesisDoctoral ThesisCollection of Articles

Open Access

Amber inclusions from New Zealand

Schmidt, A., Kaulfuss, U., Bannister, J., Baronov, V., Beimforde, C., Bleile, N., Borkent, A., Busch, A., Conran, J., Engel, M., Harvey, M., Kennedy, E., Kerr, P., Kettunen, E. J., Kiecksee, A., Lengeling, F., Lindqvist, J., Maraun, M., Mildenhall, D., Perrichot, V. & 7 othersRikkinen, J., Sadowski, E-M., Seyfullah, L., Stebner, F., Szwedo, J., Ulbrich, P. & Lee, D., Apr 2018, In : Gondwana Research. 56, p. 135-146 12 p.

Research output: Contribution to journalArticleScientificpeer-review

A multi-parent faba bean (Vicia faba L.) population for future genomic studies

Khazaei, H., Stoddard, F. L., Purves, R. W. & Vandenberg, A., Oct 2018, In : Plant Genetic Resources. 16, 5, p. 419-423 5 p.

Research output: Contribution to journalArticleScientificpeer-review

Anaerobic Microbial Dechlorination of Polychlorinated Dibenzo-p-dioxins and Dibenzofurans in Contaminated Kymijoki River Sediments

Mäntynen, S., 2018, Helsinki: Helsingin yliopisto.

Research output: ThesisDoctoral ThesisCollection of Articles

Open Access

Analysing Ecological Communities with Joint Species Distribution Models

Norberg, A., 2018, Helsinki: Helsingin yliopisto.

Research output: ThesisDoctoral ThesisCollection of Articles

Open Access

Ancient Fennoscandian genomes reveal origin and spread of Siberian ancestry in Europe

Lamnidis, T. C., Majander, K., Jeong, C., Salmela, E., Wessman, A., Moiseyev, V., Khartanovich, V., Balanovsky, O., Ongyerth, M., Weihmann, A., Sajantila, A., Kelso, J., Pääbo, S., Onkamo, P., Haak, W., Krause, J. & Schiffels, S., 27 Nov 2018, In : Nature Communications. 9, 12 p., 5018.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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An Extended Targeted Copy Number Variation Detection Array Including 187 Genes for the Diagnostics of Neuromuscular Disorders

Sagath, L., Lehtokari, V-L., Välipakka, S., Udd, B., Wallgren-Pettersson, C., Pelin, K. & Kiiski, K., 2018, In : Journal of Neuromuscular Diseases. 5, 3, p. 307-314 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Animal Sound Identifier (ASI): software for automated identification of vocal animals

Ovaskainen, O., de Camargo, U. M. & Somervuo, P., Aug 2018, In : Ecology Letters. 21, 8, p. 1244-1254 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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An intercomparison of oceanic methane and nitrous oxide measurements

Wilson, S. T., Bange, H. W., Arevalo-Martinez, D. L., Barnes, J., Borges, A., Brown, I., Bullister, J. L., Burgos, M., Capelle, D. W., Casso, M., de la Paz, M., Farias, L., Fenwick, L., Ferron, S., Garcia, G., Glockzin, M., Karl, D. M., Kock, A., Laperriere, S., Law, C. S. & 11 othersManning, C. C., Marriner, A., Myllykangas, J-P., Pohlman, J. W., Rees, A. P., Santoro, A. E., Tortell, P. D., Upstill-Goddard, R. C., Wisegarver, D. P., Zhang, G-L. & Rehder, G., 5 Oct 2018, In : Biogeosciences. 15, 19, p. 5891-5907 17 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Anno Domini 2019

Syrjänen, P. (ed.) & Rikkinen, J., Jun 2018, Otava. 192 p. (Anno Domini)

Research output: Book/ReportBookGeneral public

An overview of Cladoceran studies conducted in mine water impacted lakes

Leppänen, J. J., 23 Aug 2018, In : International aquatic research. 10, 3, p. 207-221 15 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Anthropogenic and climatic impacts on a coastal environment in the Baltic Sea over the last 1000 years

Ning, W., Nielsen, A. B., Norbäck Ivarsson, L., Jilbert, T. S., Åkesson, C., Slomp, C. P., Andren, E., Broström, A. & Filipsson, H. L., Mar 2018, In : Anthropocene. 21, p. 66-79 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Antibiotic-Resistance Genes in Waste Water

Karkman, A. V., Thuy Do, T., Walsh, F. & Virta, M. P. J., Mar 2018, In : Trends in Microbiology. 26, 3, p. 220-228 9 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

A plant pathogen modulates the effects of secondary metabolites on the performance and immune function of an insect herbivore

Rosa, E., Woestmann, L., Biere, A. & Saastamoinen, M., Oct 2018, In : Oikos. 127, 10, p. 1539-1549 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Application of an enzyme digestion method reveals microlitter in Mytilus trossulus at a wastewater discharge area

Railo, S., Talvitie, J., Setälä, O., Koistinen, A. & Lehtiniemi, M., May 2018, In : Marine Pollution Bulletin. 130, p. 206-214 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Application of steric exclusion chromatography on monoliths for separation and purification of RNA molecules

Levanova, A. & Poranen, M. M., 2 Nov 2018, In : Journal of Chromatography. A. 1574, p. 50-59 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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A quantitative framework for evaluating the impact of biodiversity offset policies

Peterson, H., Maron, M., Moilanen, A., Bekessy, S. & Gordon, A., Aug 2018, In : Biological Conservation. 224, p. 162-169 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Aquatic Invertebrates in Särkkäniemi

Liao, W., 2018, 5 p.

Research output: Book/ReportCommissioned reportProfessional

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Arabidopsis downy mildew effector HaRxL106 suppresses plant immunity by binding to RADICAL-INDUCED CELL DEATH1

Wirthmueller, L., Asai, S., Rallapalli, G., Sklenar, J., Fabro, G., Kim, D. S., Lintermann, R., Jaspers, P., Wrzaczek, M., Kangasjärvi, J., MacLean, D., Menke, F. L. H., Banfield, M. J. & Jones, J. D. G., Oct 2018, In : New Phytologist. 220, 1, p. 232-248 17 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Arabidopsis MLO2 is a negative regulator of sensitivity to extracellular reactive oxygen species

Cui, F., Wu, H., Safronov, O., Zhang, P., Kumar, R., Kollist, H., Salojärvi, J. T., Panstruga, R. & Overmyer, K. L., Apr 2018, In : Plant, Cell and Environment. 41, 4, p. 782-796 15 p.

Research output: Contribution to journalArticleScientificpeer-review

Arctic hydroclimate variability during the last 2000 years: current understanding and research challenges

Linderholm, H. W., Nicolle, M., Francus, P., Gajewski, K., Helama, S., Korhola, A., Solomina, O., Yu, Z., Zhang, P., D'Andrea, W. J., Debret, M., Divine, D. V., Gunnarson, B. E., Loader, N. J., Massei, N., Seftigen, K., Thomas, E. K., Werner, J., Andersson, S., Berntsson, A. & 4 othersLuoto, T. P., Nevalainen, L., Saarni, S. & Valiranta, M., 10 Apr 2018, In : Climate of the Past. 14, 4, p. 473-514 42 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Open Access
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Are sacred caves still safe havens for the endemic bats of Madagascar?

Fernandez-Llamazares, A., Lopez-Baucells, A., Rocha, R., Andriamitandrina, S. F. M., Andriatafika, Z. E., Burgas, D., Temba, E. M., Torrent, L. & Cabeza, M., Apr 2018, In : Oryx. 52, 2, p. 271-275 5 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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A retrospective study of fatty acid composition in Baltic herring (Clupea harengus membras) caught at three locations in the Baltic Sea (1973-2009)

Lind, Y., Huovila, T. & Käkelä, R., 2018, In : ICES Journal of Marine Science. 75, 1, p. 330-339 10 p.

Research output: Contribution to journalArticleScientificpeer-review

A revision of the Old World Black Nightshades (Morelloid clade of Solanum L., Solanaceae)

Särkinen, T., Poczai, P., Barboza, G., van der Weerden, G. M., Baden, M. & Knapp, S., 25 Jul 2018, In : PhytoKeys. 106, p. 1-223 223 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Argo Floats as a Novel Part of the Monitoring the Hydrography of the Bothnian Sea

Haavisto, N., Tuomi, L., Roiha, P., Siiria, S-M., Alenius, P. & Purokoski, T., 18 Sep 2018, In : Frontiers in Marine Science. 5, 12 p., 324.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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A Simple Strategy to Determine the Dependence of Membrane-Bound Pyrophosphatases on K+ as a Cofactor

Strauss, J., Wilkinson, C., Vidilaseris, K., Harborne, S. P. D. & Goldman, A., 2018, Phosphatases. Allen, K. N. (ed.). ACADEMIC PRESS INC ELSEVIER SCIENCE, p. 131-156 26 p. (Methods in Enzymology; vol. 607).

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review