Faculty of Biological and Environmental Sciences

  • Viikinkaari 9

    HELSINKI

    Finland

Publications 1966 2021

2019

Developments and opportunities in fungal strain engineering for the production of novel enzymes and enzyme cocktails for plant biomass degradation

Kun, R., Gomes, A. C. S., Hilden, S. K., Salazar Cerezo, S., Mäkelä, M. R. & de Vries, R., 27 Feb 2019, In : Biotechnology Advances.

Research output: Contribution to journalReview ArticleScientificpeer-review

Dietary transitions among three contemporary hunter-gatherers across the tropics

Reyes-Garcia, V., Powell, B., Diaz-Reviriego, I., Fernandez-Llamazares, A., Gallois, S. & Gueze, M., Feb 2019, In : Food Security: The Science, Sociology and Economics of Food Production and Access to Food. 11, 1, p. 109-122 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Different aspects of trade mark confusion with respect to distribution of CAD files in the era of 3D printing

Pihlajarinne, T. E. & Oker-Blom, M., 25 Jan 2019, Online Distribution of Content in the EU. Pihlajarinne, T., Vesala, J. & Honkkila, O. (eds.). Edward Elgar, p. 153–170 18 p. 10

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Differential abundance analyses of human microbiota in Parkinson’s disease

Aho, V. T. E., 29 Mar 2019, Helsinki: University of Helsinki. 72 p.

Research output: ThesisDoctoral ThesisCollection of Articles

Diff isomiRs: Large-scale detection of differential isomiRs for understanding non-coding regulated stress omics in plants

Yang, K., Wen, X., Mudunuri, S., Varma, G. P. S. & Sablok, G., 5 Feb 2019, In : Scientific Reports. 9, 12 p., 1406.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Discovering heritable modes of MEG spectral power

Leppaaho, E., Renvall, H., Salmela, E., Kere, J., Salmelin, R. & Kaski, S., 1 Apr 2019, In : Human Brain Mapping. 40, 5, p. 1391-1402 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Discovery of Small Molecules that Activate RNA Methylation through Cooperative Binding to the METTL3-14-WTAP Complex Active Site

Selberg, S., Blokhina, D., Aatonen, M., Koivisto, P., Siltanen, A., Mervaala, E., Kankuri, E. & Karelson, M., 26 Mar 2019, In : Cell Reports. 26, 13, p. 3762-+ 15 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Distinct co-occurrence patterns and driving forces of rare and abundant bacterial subcommunities following a glacial retreat in the eastern Tibetan Plateau

Jiang, Y., Song, H., Lei, Y., Korpelainen, H. & Li, C., May 2019, In : Biology and Fertility of Soils. 55, 4, p. 351-364 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Distinct fatty acid signatures in infrapatellar fat pad and synovial fluid of patients with osteoarthritis versus rheumatoid arthritis

Mustonen, A-M., Käkelä, R., Lehenkari, P., Huhtakangas, J., Turunen, S., Joukainen, A., Kaariainen, T., Paakkonen, T., Kroger, H. & Nieminen, P., 22 May 2019, In : Arthritis research & therapy. 21, 11 p., 124.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Diurnal and Seasonal Solar Induced Chlorophyll Fluorescence and Photosynthesis in a Boreal Scots Pine Canopy

Nichol, C. J., Drolet, G., Porcar-Castell, A., Wade, T., Sabater, N., Middleton, E. M., MacLellan, C., Levula, J., Mammarella, I., Vesala, T. & Atherton, J., 1 Feb 2019, In : Remote Sensing. 11, 3, 22 p., 273.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Diurnal Changes in Leaf Photochemical Reflectance Index in Two Evergreen Forest Canopies

Mõttus, M., Aragão, L., Bäck, J. K., Clemente, R. H., Maeda, E. E., Markiet, V. R. L., Nichol, C., Oliveira, R. C. & Restrepo-Coupe, N., 14 Feb 2019, In : IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Diverse and variable virus communities in wild plant populations revealed by metagenomic tools

Susi, H., Filloux, D., Frilander, M. J., Roumagnac, P. & Laine, A-L., 11 Jan 2019, In : PeerJ. 7, 24 p., 6140.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Diverse Environmental Microbiota as a Tool to Augment Biodiversity in Urban Landscaping Materials

Hui, N., Grönroos, M., Roslund, M. I., Parajuli, A., Vari, H. K., Soininen, L., Laitinen, O. H., Sinkkonen, A. & The ADELE Research Group, 22 Mar 2019, In : Frontiers in Microbiology. 10, 10 p., 536.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Diversity in warning coloration: selective paradox or the norm?

Briolat, E. S., Burdfield-Steel, E. R., Paul, S. C., Rönkä, K. H., Seymore, B. M., Stankowich, T. & Stuckert, A. M. M., Apr 2019, In : Biological Reviews. 94, 2, p. 388-414 27 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Open Access
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Diversity patterns of native and exotic fish species suggest homogenization processes, but partly fail to highlight extinction threats

Gavioli, A., Milardi, M., Castaldelli, G., Fano, E. A. & Soininen, J., Jun 2019, In : Diversity and Distributions. 25, 6, p. 983-994 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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DNA methylation changes and somatic mutations as tumorigenic events in Lynch syndrome-associated adenomas retaining mismatch repair protein expression

Mäki-Nevala, S., Valo, S., Ristimaki, A., Sarhadi, V., Knuutila, S., Nyström, M., Renkonen-Sinisalo, L., Lepistö, A., Mecklin, J-P. & Peltomäki, P., Jan 2019, In : EBioMedicine. 39, p. 280-291 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Does it Make a Difference? The Effects of Volunteering from the Viewpoint of Recipients: A Literature Review

Grönlund, H. & Falk, H., 2019, (Accepted/In press) In : Diaconia. The Journal for the Study of Christian Social Practice .

Research output: Contribution to journalArticleScientificpeer-review

DOF2.1 Controls Cytokinin-Dependent Vascular Cell Proliferation Downstream of TMO5/LHW

Smet, W., Sevilem, I., de Luis Balaguer, MA., Wybouw, B., Mor, E., Miyashima, S., Blob, B., Roszak, P., Jacobs, TB., Boekschoten, M., Hooiveld, G., Sozzani, R., Helariutta, Y. E. & De Rybel, B., 4 Feb 2019, In : Current Biology. 29, 3, p. 520-+ 16 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Dominantly inherited distal nemaline/cap myopathy caused by a large deletion in the nebulin gene

Kiiski, K. J., Lehtokari, V-L., Vihola, A. K., Laitila, J. M., Huovinen, S., Sagath, L. J., Evilä, A. E., Paetau, A. E., Sewry, C. A., Hackman, P. B., Pelin, K. B., Wallgren-Pettersson, C. & Udd, B., Feb 2019, In : Neuromuscular Disorders. 29, 2, p. 97-107 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Dose-dependent effects of isoflurane on TrkB and GSK3β signaling: Importance of burst suppression pattern

Theilmann, W., Alitalo, O. A., Yorke, I. & Rantamäki, T. P. J., 16 Feb 2019, In : Neuroscience Letters. 694, p. 29-33 5 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Draft genome sequences of three monokaryotic isolates of the white-rot basidiomycete fungus Dichomitus squalens

Casado López, S., Peng, M., Daly, P., Andreopoulos, B., Pangilinan, J., Lipzen, A., Riley, R., Ahrendt, S., Ng, V., Barry, K., Daum, C., Grigoriev, I. V., Hilden, S. K., Mäkelä, M. R. & de Vries, R. P., 2019, (Accepted/In press) In : Microbiology Resource Announcements.

Research output: Contribution to journalArticleScientificpeer-review

Driving next-generation autophagy researchers towards translation (DRIVE), an international PhD training program on autophagy

Kraft, C., Boya, P., Codogno, P., Elazar, Z., Eskelinen, E-L., Farres, J., Kirkin, V., Jungbluth, H., Martinez, A., Pless, O., Primard, C., Proikas-Cezanne, T., Simonsen, A. & Reggiori, F., 1 Feb 2019, In : Autophagy. 15, 2, p. 347-351 5 p.

Research output: Contribution to journalComment/debateScientific

Open Access
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Drought impacts on tree phloem: from cell-level responses to ecological significance

Salmon, Y., Dietrich, L., Sevanto, S., Hölttä, T., Dannoura, M. & Epron, D., Feb 2019, In : Tree Physiology. 39, 2, p. 173-191 19 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Dual RNA-seq analysis provides new insights into interactions between Norway spruce and necrotrophic pathogen Heterobasidion annosum s.l.

Kovalchuk, A., Zeng, Z., Ghimire, R. P., Kivimäenpää, M., Raffaello, T., Liu, M., Mukrimin, M., Kasanen, R. A. O., Sun, H., Julkunen-Tiitto, R., Holopainen, J. K. & Asiegbu, F. O., 3 Jan 2019, In : BMC Plant Biology. 19, 2, 17 p., 2.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Dwelling in Political Landscapes: Contemporary Anthropological Perspectives

Lounela, A. (ed.), Berglund, E. K. (ed.) & Kallinen, T. P. (ed.), 2019, Helsinki: Suomalaisen Kirjallisuuden Seura. 293 p. (Studia Fennica Anthropologica; vol. 2019, no. 4)

Research output: Book/ReportAnthology or special issueScientificpeer-review

Open Access

Dysregulated Ca2+-Permeable AMPA Receptor Signaling in Neural Progenitors Modeling Fragile X Syndrome

Danesi, C., Keinänen, K. P. & Castren, M. L., 8 Feb 2019, In : Frontiers in Synaptic Neuroscience. 11, 8 p., 2.

Research output: Contribution to journalReview ArticleScientificpeer-review

Open Access
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Ecological intensification by integrating biogas production into nutrient cycling: Modeling the case of Agroecological Symbiosis

Koppelmäki, K. V., Parviainen, T. O., Virkkunen, E., Winquist, E., Schulte, R. & Helenius, J. P., 1 Mar 2019, In : Agricultural Systems. 170, p. 39-48 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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EcoMem: An R package for quantifying ecological memory

Itter, M. S., Vanhatalo, J. & Finley, A. O., 2019, In : Environmental Modelling & Software. 119, p. 305-308 4 p.

Research output: Contribution to journalArticleScientificpeer-review

Economics, education and citizenship

Obeng-Odoom, F., 25 Feb 2019, In : Australian Universities' Review. 61, 1, p. 3-11 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Economics of boreal conifer species in continuous cover and rotation forestry

Parkatti, V-P. M., Assmuth, A. E., Rämö, J. & Tahvonen, O. I., Mar 2019, In : Forest Policy and Economics. 100, C, p. 55-67 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Editorial: Changing Plankton Communities: Causes, Effects and Consequences

Spilling, K., Tedesco, L., Klais, R. & Olli, K., 28 May 2019, In : Frontiers in Marine Science. 6

Research output: Contribution to journalEditorialScientificpeer-review

Open Access
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Effect of water deficit stress on seedling biomass and physio-chemical characteristics in different species of wheat possessing the D genome.

Pour-Aboughadareh, A., Omidi, M., NAGHAVI, M., Etminan, A., MEHRABI, AA., Poczai, P. & BIAT, H., 2019, (Submitted) In : PLoS One.

Research output: Contribution to journalArticleScientificpeer-review

Effect of wet storage conditions on potato tuber transcriptome, phytohormones and growth

Peivastegan, B., Hadizadeh, I., Nykyri, J., Nielsen, K. L., Somervuo, P., Sipari, N., Tran, C. & Pirhonen, M., 17 Jun 2019, In : BMC Plant Biology. 19, 18 p., 262.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Effects of a glyphosate-based herbicide on soil animal trophic groups and associated ecosystem functioning in a northern agricultural field

Hagner, M., Mikola, J., Saloniemi, I., Saikkonen, K. & Helander, M., 2019, In : Scientific Reports.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Effects of Biochar on Fluxes and Turnover of Carbon in Boreal Forest Soils

Zhao, P., Palviainen, M., Koster, K., Berninger, F., Bruckman, V. J. & Pumpanen, J., 2019, In : Soil Science Society of America Journal. 83, 1, p. 126-136 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Effects of competition and phosphorus fertilization on leaf and root traits of late-successional conifers Abies fabri and Picea brachytyla

Yu, L., Song, M., Lei, Y., Korpelainen, H., Niinemets, U. & Li, C., Jun 2019, In : Environmental and Experimental Botany. 162, p. 14-24 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Effects of Lobbying Among Urban Planners in Finland: Views on Multi-Storey Wooden Building

Lähtinen, K., Toppinen, A. & Malm, N., 1 Jun 2019, In : BioProducts Business. 4, 7, p. 77-92

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Efficient Inhibition of Avian and Seasonal Influenza A Viruses by a Virus-Specific Dicer-Substrate Small Interfering RNA Swarm in Human Monocyte-Derived Macrophages and Dendritic Cells

Jiang, M., Osterlund, P., Westenius, V., Guo, D., Poranen, M. M., Bamford, D. H. & Julkunen, I., Feb 2019, In : Journal of Virology. 93, 4, 21 p., 01916.

Research output: Contribution to journalArticleScientificpeer-review

ELIMÄKI locus is required for mechanosensing and proprioception in birch trees

Helariutta, Y., 2019, (Submitted) In : Nature plants.

Research output: Contribution to journalArticleScientificpeer-review

Elintarvikkeiden Oiva-valvontaa pitää kehittää

Kaskela, J. A., Ollila, S. A., Vainio, S. A. & Lunden, J. M., 2019, In : Kehittyvä Elintarvike. 30, 1, p. 30-31 2 p.

Research output: Contribution to journalArticleProfessional

Emerging urban mobility technologies through the lens of everyday urban aesthetics: Case of self-driving robots

Mladenovic, M., Lehtinen, S., Martens, K. & Soh, E., 2019, (Accepted/In press) In : Essays in Philosophy. Special issue: The Philosophical Dimensions of Urban Transportation (ed. Shane Epting), Volume 21, Number 2, 15 p.

Research output: Contribution to journalArticleScientificpeer-review