Faculty of Biological and Environmental Sciences

Publications

Research output per year 1962 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014 2015 2016 2017 2018 2019 2020 2021 2022 2023 2024

• 15318 Article
• 1479 Chapter
• 690 Review Article
• 664 Doctoral Thesis
• 2329 More
  • 533 Conference contribution
  • 377 Commissioned report
  • 317 Book
  • 184 Paper
  • 130 Editorial
  • 99 Conference article
  • 86 Master's thesis
  • 77 Abstract
  • 74 Anthology or special issue
  • 60 Poster
  • 58 Meeting Abstract
  • 58 Other articles
  • 56 Letter
  • 52 Digital or Visual Products
  • 38 Other contribution
  • 34 Comment/debate
  • 21 Software
  • 13 Entry for encyclopedia / dictionary
  • 11 Patent
  • 10 Bachelor's thesis
  • 10 Working paper
  • 9 Book/Film/Article review
  • 6 Foreword / postscript
  • 3 Other conference material
  • 3 Performance
  • 3 Web publication/site
  • 3 Licenciate's thesis
  • 3 Preprint
  • 1 Literature review (scientific)

Research output per year

Research output per year

Search results

• 2022

  A conserved membrane-integral pyrophosphatase anionic membrane fingerprint identified by multi-scale molecular dynamics simulations

  Holmes, A. O. M., Goldman, A. & Kalli, A., 11 Feb 2022, In: Biophysical Journal. 121, 3, p. 312A-312A 1 p.

  Research output: Contribution to journal › Meeting Abstract › peer-review

• Distribution, population density and behavior of Taita Dwarf Galago

  Rosti, H., Heiskanen, J., Bearder, S., Pellikka, P. & Rikkinen, J., Apr 2022, In: American journal of biological anthropology. 177, S73, p. 155-155 1 p.

  Research output: Contribution to journal › Meeting Abstract › peer-review

• Fertilization rate and maturation of porcine IVP embryos from lactational sows on restricted or full feed

  Oztash, T., Han, T., Kuure, S., Venhoranta, H., Goericke-Pesch, S., Kareskoski, M., Björkman, S. & Peltoniemi, O., Feb 2022, In: Reproduction in Domestic Animals. 57, Suppl 1, p. 126-127 2 p.

  Research output: Contribution to journal › Meeting Abstract › peer-review

• Hepatic insulin resistance is the basis of bile acid dysmetabolism in non-alcoholic fatty liver disease

  Qadri, S., Vartiainen, E., Ahlholm, N., Porthan, K., Juuti, A., Sammalkorpi, H., Penttilä, A., Arola, J., Tukiainen, T., Oresic, M., Hyötyläinen, T. & Yki-Järvinen, H., 25 Jun 2022, In: Journal of Hepatology. 77, Suppl. 1, p. S694-S695 2 p.

  Research output: Contribution to journal › Meeting Abstract

  Open Access

• Hepsin promotes breast tumor growth signaling via TGF beta-EGFR axis

  Tervonen, T., Belitskin, D., Munne, P., Pant, S., Anttila, J., Belitskina, K., Pouwels, J. & Klefström, J., Oct 2022, In: European Journal of Cancer. 174, Supplement 1 , p. S98 1 p.

  Research output: Contribution to journal › Meeting Abstract › peer-review

  Open Access

• SKOR2 expressing gabaergic neurons in the periaqueductal gray and mesencephalic reticular formation may be involved in the regulation of REM sleep

  Lelkes, Z., Kirjavainen, A., Singh, P., Lahti, L., Kilpinen, S., Stenberg, T., Achim, K. & Partanen, J., Oct 2022, In: Journal of Sleep Research. 31, 2 p.

  Research output: Contribution to journal › Meeting Abstract › peer-review

• 2021

  Children with familial hypercholesterolemia display changes in LDL and HDL function: A Cross-sectional study

  Christensen, J. J., Narverud, I., Ruuth, M., Heier, M., Jauhiainen, M., Ulven, S. M., Bogsrud, M. P., Kovanen, P. T., Halvorsen, B., Oda, M., Wium, C., Retterstol, K., Oorni, K. & Holven, K. B., Aug 2021, In: Atherosclerosis. 331, p. E22-E22 1 p.

  Research output: Contribution to journal › Meeting Abstract › peer-review

• Exploiting epigenetic therapy to improve viral-based platforms for cancer immunotherapy.

  Russo, S., Feola, S., Chiaro, J., Hamdan, F., Feodoroff, M., Fusciello, M., Antignani, G., Ylosmaki, E., Gronholm, M. & Cerullo, V., Oct 2021, In: Human Gene Therapy. 32, 19-20, p. A98-A98 1 p.

  Research output: Contribution to journal › Meeting Abstract › peer-review

• PeptiCHIP: A Novel Microfluidic-Based Chip Platform for Tumour Antigen Landscape Identification

  Feola, S., Haapala, M., Peltonen, K., Capasso, C., Martins, B., Antignani, G., Federico, A., Pietiainen, V., Chiaro, J., Feodoroff, M., Ranniko, A., Fusciello, M., Koskela, S., Partanen, J., Hamdan, F., Tahka, S., Ylosmaki, E., Greco, D., Gronholm, M., Kekarainen, T., & 7 othersEshaghi, M., Gurvich, O. L., Yla-Herttuala, S., Branca, R. M. M., Lehtio, J., Sikanen, T. & Cerullo, V., 27 Apr 2021, In: Molecular therapy. 29, 4, p. 330-330 1 p.

  Research output: Contribution to journal › Meeting Abstract › peer-review

• PeptiCHIP: A novel microfluidic-based chip platform for tumor antigen landscape identification.

  Feola, S., Happala, M., Peltonen, K., Capasso, C., Antignani, G., Federico, A., Pietiainen, V., Chiaro, J., Feodoroff, M., Ranniko, A., Fusciello, M., Koskela, S., Partanen, J., Hamdan, F., Tahka, S., Ylosmaki, E., Greco, D., Gronholm, M., Branca, R. M. M., Lehtio, J., & 2 othersSiikanen, T. & Cerullo, V., Jul 2021, In: Cancer Research. 81, 13, 2 p.

  Research output: Contribution to journal › Meeting Abstract › peer-review

• 2020

  Acetazolamide as a potential treatment for birth asphyxia seizures

  Pospelov, A., Ala-Kurikka, T., Voipio, J. & Kaila, K., Nov 2020, In: European Neuropsychopharmacology. 40, p. S359-S359 1 p.

  Research output: Contribution to journal › Meeting Abstract › peer-review

• Overview of the software for species distribution modelling

  Guilbault, E. P. & Renner, I., 2020, In: Biometric Bulletin. 37, 4, p. 10-12

  Research output: Contribution to journal › Meeting Abstract

• P499 Objectively assessed disease activity during ustekinumab treatment in a nationwide real-life Crohn’s disease cohort

  af Björkesten, C. G., Ilus, T., Hallinen, T., Soini, E., Eberl, A., Hakala, K., Heikura, M., Hirsi, E., Jussila, A., Kellokumpu, M., Koskela, R., Koskinen, I., Moilanen, V., Nielsen, C., Nieminen, U., Nuutinen, H., Heikkinen, M., Suhonen, U. M., Tillonen, J., Utriainen, K., & 6 othersVihriälä, I., Wennerström, C., Borsi, A., Nissinen, R., Koivunen, M. & Sipponen, T., 1 Jan 2020, In: Journal of Crohn's and Colitis. 14, Supplement_1, p. S434-S435 2 p., P499.

  Research output: Contribution to journal › Meeting Abstract › peer-review

• Retinal loss sets a fundamental limit to the variance of visual signals originating from single-photon stimulation

  Tiihonen, J. S., Tavala, A., Dovzhik, K. & Ala-Laurila, P., Jun 2020, In: Investigative Ophthalmology & Visual Science. 61, 7, 1106.

  Research output: Contribution to journal › Meeting Abstract

  Open Access
• 2019

  Brain region-dependent variation in myelin-related gene expression and myelin thickness in chronic psychosocial stress

  Laine, M. A., Trontti, K., Misiewicz, Z., Sokolowska, E., Kulesskaya, N., Heikkinen, A., Saarnio, S., Balcells, I., Ameslon, P., Greco, D., Mattila, P., Ellonen, P., Paulin, L., Auvinen, P., Jokitalo, E. & Hovatta, I., Jul 2019, In: Glia. 67, p. E450-E451 2 p.

  Research output: Contribution to journal › Meeting Abstract › peer-review

• LP(A)-DEPENDENT INFLAMMASOME ACTIVATION AS A DRIVER OF ITS ATHEROGENICITY

  Oorni, K., Lorey, M. B., Borelli, M., Tigistu-Sahle, F., Ruuth, M., Aikas, L., Kakela, R., Boffa, M. B. & Koschinsky, M. L., Aug 2019, In: Atherosclerosis. 287, p. E282-E282 1 p.

  Research output: Contribution to journal › Meeting Abstract › peer-review

• Ticagrelor decreases concentrations of prothrombotic extracellular vesicles compared to clopidogrel

  Gasecka, A., Nieuwland, R., Budnik, M., Dignat-George, F., Eyileten, C., Harrison, P., Kaplon-Cieslicka, A., Lacroix, R., Opolski, G., Van der Pol, E., Postula, M., Leroyer, A., Siljander, P., Sturk, A. & Filipiak, K., Oct 2019, In: European Heart Journal. 40, p. 75-75 1 p.

  Research output: Contribution to journal › Meeting Abstract › peer-review

• 2018

  Digital leap project – students’ perceptions of summative online assessment pilot

  Siirilä, S., Rostila, A., Mervaala, E., Baumann, M., Merenmies, J. & Pyörälä, E., 12 Mar 2018, In: The Journal of the Islamic International Medical College. 13, Supplement, p. 100 1 p.

  Research output: Contribution to journal › Meeting Abstract › peer-review

  Open Access

• Genome-Scale CRISPR Screens Identify Essential Genes for Sensitivity to Natural Killer Cells in Hematological Malignancies

  Dufva, O., Klievink, J., Saeed, K., Kankainen, M., Ilander, M., Hannunen, T., Lagstrom, S., Ellonen, P., Lee, D. A. & Mustjoki, S., 29 Nov 2018, In: Blood. 132, 2 p.

  Research output: Contribution to journal › Meeting Abstract › peer-review

• Health promoting materials to manage urban pollution and immune-mediated diseases

  Roslund, M. I., Rajaniemi, J., Hyöty, H., Puhakka, R., Grönroos, M., Parajuli, A., Siter, N., Nurminen, N., Lin, J., Oikarinen, S., Laitinen, O-H. & Sinkkonen, A. T., 2018, In: Journal of Biotechnology. 280S, S12–S31, p. S17 1 p.

  Research output: Contribution to journal › Meeting Abstract › peer-review

• Interactions of Polyporales fungi: enzyme activities, release of VOCs and progress of spruce wood decomposition upon three-species cohabitation experiments

  Mali, T., Mäki, M., Hellén, H., Heinonsalo, J., Bäck, J. & Lundell, T., 2018, In: Luonnonvara- ja biotalouden tutkimus. p. 69

  Research output: Contribution to journal › Meeting Abstract › peer-review

  Open Access

• MCM3AP in recessive axonal neuropathy and mild intellectual disability

  Ylikallio, E., Woldegebriel, R., Tumiati, M., Isohanni, P., Ryan, M. M., Stark, Z., Maie, W., Sawyer, S. L., Bell, K. M., Oshlack, A., Lockhart, P. L., Shcherbii, M., Estrada-Cuzcano, A., Atkinson, D., Hartley, T., Tetreault, M., Cuppen, I., van der Pol, W. L., Candayan, A., Battaloglu, E., & 8 othersParman, Y., van Gassen, K. L. I., van den Boogaard, M. H., Boycott, K. M., Kauppi, L., Jordanova, A., Lonnqvist, T. & Tyynismaa, H., 2018, In: European Journal of Human Genetics. 26, p. 40-41 2 p.

  Research output: Contribution to journal › Meeting Abstract › peer-review

• Nature-derived microbial exposure as a novel strategy to modify immune modulation among urban dwellers

  Sinkkonen, A. T., Hyöty, H., Rajaniemi, J., Puhakka, R., Grönroos, M., Parajuli, A., Roslund, M. I., Siter, N., Nurminen, N., Oikarinen, S., Lin, J. & Laitinen, O-H., 2018, In: Journal of Biotechnology. 280S, S12-S31, p. S17 1 p.

  Research output: Contribution to journal › Meeting Abstract › peer-review

• Quantitative Multiplex Immunohistochemistry Identifies Immunosuppression in the AML Bone Marrow and NK-Cells As Prognostic Biomarker in Intermediate-Risk Patients

  Bruck, O., Dufva, O., Blom, S., Turkki, R., Ilander, M., Siitonen, S. M., Kovanen, P., Pallaud, C., Ramos, P. M., Lähteenmaki, H., Valimaki, K., Ribeiro, A., Kallioniemi, O., Porkka, K., Pellinen, T. & Mustjoki, S., 29 Nov 2018, In: Blood. 132, 3 p.

  Research output: Contribution to journal › Meeting Abstract › peer-review

• Time-course of left ventricle function during mild therapeutic hypothermia in out-of-hospital cardiac arrest patients

  Ballo, H., Saraste, A., Laitio, R., Arola, O., Airaksinen, J., Pietila, M., Harjola, V., Varpula, M., Vahlberg, T. & Laitio, T., Aug 2018, In: European Heart Journal. 39, p. 1374-1374 1 p.

  Research output: Contribution to journal › Meeting Abstract › peer-review

  Open Access

  File
• 2017

  A novel copy number variation detection array for the diagnostics of neuromuscular disorders

  Sagath, L., Lehtokari, V., Wallgren-Pettersson, C., Pelin, K. & Kiiski, K., Oct 2017, In: Neuromuscular Disorders. 27, p. S182-S182 1 p.

  Research output: Contribution to journal › Meeting Abstract › peer-review

• A translational model of moderate perinatal asphyxia reveals lasting behavioral deficits in the absence of focal neuronal loss

  Sipos, E., Kerenyi, A., Orsolits, B., Demeter, K., Bakos, P., Pottyondi, P., Paszthy-Szabo, B., Aliczki, M., Balogh, Z., Bhavesh, R., Yazdanparast, E., Rabanal, F. H., Ruiz-Capello, J., Szigeti, K., Mathe, D., Szabo, M., Fekete, A., Kaila, K., Mikics, E. & Denes, A., Apr 2017, In: Journal of Cerebral Blood Flow and Metabolism. 37, p. 470-471 2 p.

  Research output: Contribution to journal › Meeting Abstract › peer-review

• DISC1 GENE NETWORK MUTATIONS IN MAJOR MENTAL ILLNESS

  Sinha, V., Ortega-Alonso, A., Ukkola-Vuoti, L., Hovatta, I., Haukka, J., Torniainen, M., Therman, S., Cannon, T., Kaprio, J., Lonnqvist, J., Partonen, T., Isometsa, E., Paunio, T., Suvisaari, J. & Hennah, W., Oct 2017, In: European Neuropsychopharmacology. 27, p. S406-S407 2 p., M57.

  Research output: Contribution to journal › Meeting Abstract › peer-review

• Effects of arginine vasopressin on hippocampal network activity in a rat model of birth asphyxia

  Prokic, E., Summanen, M., Hartung, H., Alafuzoff, A., Voipio, J. & Kaila, K., Apr 2017, In: Journal of Cerebral Blood Flow and Metabolism. 37, p. 322-323 2 p.

  Research output: Contribution to journal › Meeting Abstract › peer-review

• The living environment shapes intestinal microbial communities and immune responses in a mouse model

  Ottman, N., Ruokolainen, L., Suomalainen, A., Karisola, P., Lehtimäki, J., Lehto, M., Hanski, I., Alenius, H. & Fyhrquist, N., Aug 2017, In: Allergy : European journal of allergy and clinical immunology. 72, p. 497-497 1 p.

  Research output: Contribution to journal › Meeting Abstract › peer-review

• tRNA modification as a virulence factor in pathogenic Candida species

  Böttcher, B., Morgner, B., Sarin, L. P., Allert, S., Jacobsen, I. D., Drexler, H. C., Leidel, S. A. & Brunke, S., Aug 2017, In: Mycoses. 60, SI, p. 13-14 1 p.

  Research output: Contribution to journal › Meeting Abstract

• Uptake and functionality of prostate cancer extracellular vesicles depends on the metastatic stage of the parent cells

  Lazaro Ibanez, E., Neuvonen, K. M., Takatalo-Laine, S. M., Thanigai Arasu, U., Capasso, C., Rhim, J., Rilla, K., Yliperttula, M. L. & Siljander, P. R-M., May 2017, In: Journal of Extracellular Vesicles. 6, sup1

  Research output: Contribution to journal › Meeting Abstract › peer-review

  Open Access
• 2016

  Complex processing of titin C-terminus by alternative cleavage of the is7 domain

  Vihola, A., Luque, H., Jonson, P., Sarparanta, J. & Udd, B., Oct 2016, In: Neuromuscular Disorders. 26, p. S114-S114 1 p.

  Research output: Contribution to journal › Meeting Abstract

• UNSTABLE LDL - NOVEL MECHANISM OF ATHEROGENESIS AND LINK TO CARDIOVASCULAR DEATHS

  Ruuth, M., Nguyen, S. D., Vihervaara, T., Laajala, T. D., Uusitupa, M., Schwab, U., Savolainen, M., Sinisalo, J., Aittokallio, T., Kakela, R., Jauhiainen, M., Kovanen, P. & Oorni, K., Sep 2016, In: Atherosclerosis. 252, p. E208-E208 1 p.

  Research output: Contribution to journal › Meeting Abstract › peer-review

• 2015

  Structure of the bacteriophage phi6 nucleocapsid solved to 3.9 angstrom resolution using electron cryomicroscopy

  Sun, Z., Sun, X., Ilca, S., De Colibus, L., Stuart, D. I., Poranen, M. M. & Huiskonen, J. T., Jul 2015, In: The FEBS Journal. 282, S1, p. 51-52 2 p.

  Research output: Contribution to journal › Meeting Abstract

• 2014

  Acinetobacter in the skin microbiota protects from atopic sensitisation

  Fyhrquist, N. T., Ruokolainen, L., Suomalainen, A., Lehtimaki, S., Veckman, V., Vendelin, J., Karisola, P., Savinko, T., Lehto, M., Jarva, H., Kosunen, T., Corander, J., Petri, A., von Hertzen, L., Laatikainen, T., Mäkelä, M., Haahtela, T., Greco, D., Hanski & Alenius, H., Sep 2014, In: Allergy : European journal of allergy and clinical immunology. 69, p. 4-5 2 p.

  Research output: Contribution to journal › Meeting Abstract › peer-review

• Characterization of the Microrna Expression Profiles of Paired Primary and Relapsed Diffuse Large B-Cell Lymphoma (DLBCL) By Next-Generation Sequencing

  Leivonen, S-K., Icay, K., Liu, C., Taskinen, M., Lehtonen, R., Karjalainen-Lindsberg, M-L., Delabie, J., Holte, H., Hautaniemi, S. & Leppa, S., 6 Dec 2014, In: Blood. 124, 21, 3 p.

  Research output: Contribution to journal › Meeting Abstract › peer-review

• 2013

  Cross-talk of circadian and immune system in neuropeptide S receptor 1 deficient mice

  Pulkkinen, V., Savinko, T., Karisola, P., Hyytia, P., Greco, D., Hovatta, I., Kere, J., Mandelin, J. & Alenius, H., 1 Sep 2013, In: European Respiratory Journal. 42, Suppl. 57, p. 1264 1 p., P531.

  Research output: Contribution to journal › Meeting Abstract

• Safety of biological treatment among patients with rheumatic diseases in Finland: a prospective cohort study

  Joensuu, J., Aaltonenle, K. J., Virkki, L., Tuompo, R., Hirvonen, H., Lahteenmaki, J., Valiviita, T., Vasala, M., Yli-Kerttula, U., Peltomaa, R., Malmi, T. & Nordstrom, D., 2013, In: Scandinavian Journal of Rheumatology. 42, 5, p. 426-426 1 p.

  Research output: Contribution to journal › Meeting Abstract › peer-review

• 2012

  Characterization of the structural and functional determinants of MANF/CDNF proteins using Drosophila model

  Lindstrom, R., Lindholm, P., Yu, L. -Y., Kallijarvi, J., Arumae, U., Saarma, M. & Heino, T., Dec 2012, In: Journal of Neurogenetics. 26, p. 73-74 2 p.

  Research output: Contribution to journal › Meeting Abstract › peer-review

• Identification of Personalized Therapeutic Strategies and Associated Biomarkers in Adult Acute Myeloid Leukemia Using a Functional Drug Sensitivity and Resistance Testing Platform

  Pemovska, T., Yadav, B., Kulesskiy, E., Kontro, M., Heckman, C., Knowles, J., Porkka, K., Aittokallio, T., Kallioniemi, O. & Wennerberg, K., Nov 2012, In: European Journal of Cancer. 48, p. 142-143 2 p.

  Research output: Contribution to journal › Meeting Abstract › peer-review

• 2011

  Fluorescence lifetime as a tool to study protein-protein interactions of GroEL and PRD1 viral proteins

  Karttunen, J., Mäntynen, S., Oksanen, H. M., Ihalainen, J. & Bamford, J., Aug 2011, In: European Biophysics Journal. 40, p. S49-S50 2 p., P-051.

  Research output: Contribution to journal › Meeting Abstract › peer-review

  Open Access
• 2010

  DmMANF studies using the Drosophila adult brain model tissue

  Stratoulias, V. & Heino, T., Dec 2010, In: Journal of Neurogenetics. 24, p. 74-74 1 p.

  Research output: Contribution to journal › Meeting Abstract › peer-review

• Overexpression of Glutamate Transporter (GLT1) by Adeno-Associated Viral Vector Reduces Extracellular Glutamate Overflow and Cerebral Infarction After Transient Middle Cerebral Artery Occlusion in Rats

  Harvey, B. K., Airavaara, M. T., Hinzman, J., Chiocco, M. J., Shen, H., Howard, D. B., Gerhardt, G. A., Hoffer, B. J. & Wang, Y., 2010, In: Cell Transplantation. 19, 3, p. 343-343 1 p.

  Research output: Contribution to journal › Meeting Abstract › peer-review

• Study of DmMANF, the Evolutionarily Conserved Drosophila Neurotrophic Factor

  Palgi, M., Lindstrom, R., Stratoulias, V., Saarma, M. & Heino, T. I., Dec 2010, In: Journal of Neurogenetics. 24, p. 84-84 1 p.

  Research output: Contribution to journal › Meeting Abstract › peer-review

• Survival of benthic foraminifera (Globobulimina turgida) through intracellular nitrate respiration: A laboratory experiment

  Koho, K. A., Pina-Ochoa, E., Geslin, E. & Risgaard-Petersen, N., Jun 2010, In: Geochimica et Cosmochimica Acta. 74, 12, p. A528-A528 1 p.

  Research output: Contribution to journal › Meeting Abstract

• 2009

  Abscence of CCR4 Exacerbates Skin Inflammation in the Oxazolone Induced Contact Hypersensitivity Model

  Lehtimaki, S., Tillander, S., Puustinen, A., Matikainen, S., Nyman, T., Wolff, H., Alenius, H. & Lauerma, A., Sep 2009, In: Journal of Investigative Dermatology. 129, p. S3-S3 1 p.

  Research output: Contribution to journal › Meeting Abstract › peer-review

• Linking increasing hypoxia to phosphorus chemistry across redox gradients in the sediment

  Lukkari, K., Norkko, J. & Norkko, A., Jun 2009, In: Geochimica et Cosmochimica Acta. 73, 13, p. A800-A800 1 p.

  Research output: Contribution to journal › Meeting Abstract › peer-review

• Mutations in TPM2 and TPM3 causing nemaline myopathy or arthrogryposis

  Lehtokari, V. L., Kalimo, H., Pelin, K. & Wallgren-Pettersson, C., 2009, In: Neuromuscular Disorders. 19, 8-9, p. 587-588 2 p.

  Research output: Contribution to journal › Meeting Abstract › peer-review
• 2007

  alpha(m)beta(2) integrin modulator inhibits lymphoma growth in vivo and reduces squamous cell carcinoma tumor invasion by blocking leukocyte infiltration

  Suojanen, J., Salo, T., Sorsa, T. & Koivunen, E., 2007, In: Tumor Biology. 28, p. 87-87 1 p.

  Research output: Contribution to journal › Meeting Abstract › peer-review