Faculty of Biological and Environmental Sciences

  • Viikinkaari 9

    HELSINKI

    Finland

Publications

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Review Article
2020

A roadmap for research in octoploid strawberry

Whitaker, V. M., Knapp, S. J., Hardigan, M. A., Edger, P. P., Slovin, J. P., Bassil, N. V., Hytönen, T., Mackenzie, K. K., Lee, S., Jung, S., Main, D., Barbey, C. R. & Verma, S., 15 Mar 2020, In : Horticulture Research. 7, 1, 17 p., 33.

Research output: Contribution to journalReview ArticleScientificpeer-review

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Brood recognition and discrimination in ants

Schultner, E. & Pulliainen, U., 22 Jan 2020, In : Insectes Sociaux. 67, 1, p. 11-34 24 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

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Determinants and Consequences of Dispersal in Vertebrates with Complex Life Cycles: A Review of Pond-Breeding Amphibians

Cayuela, H., Valenzuela-Sanchez, A., Teulier, L., Martinez-Solano, I., Lena, J-P., Merilä, J., Muths, E., Shine, R., Quay, L., Denoel, M., Clobert, J. & Schmidt, B. R., 1 Mar 2020, In : Quarterly Review of Biology. 95, 1, p. 1-36 36 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Factors regulating the coastal nutrient filter in the Baltic Sea

Carstensen, J., Conley, D. J., Almroth-Rosell, E., Asmala, E., Bonsdorff, E., Fleming-Lehtinen, V., Gustafsson, B. G., Gustafsson, C., Heiskanen, A-S., Janas, U., Norkko, A., Slomp, C., Villnäs, A., Voss, M. & Zilius, M., Jun 2020, In : Ambio. 49, 6, p. 1194-1210 17 p.

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Historical shifts in local attitudes towards wildlife by Maasai pastoralists of the Amboseli Ecosystem (Kenya): insights from three conservation psychology theories

Fernández-Llamazares, Á., Western, D., Galvin, K. A., McElwee, P. & Cabeza, M., Feb 2020, In : Journal for Nature Conservation. 53, 11 p., 125763.

Research output: Contribution to journalReview ArticleScientificpeer-review

Immunogenicity of trimeric autotransporter adhesins and their potential as vaccine targets

Thibau, A., Dichter, A. A., Vaca, D. J., Linke, D., Goldman, A. & Kempf, V. A. J., Jun 2020, In : Medical Microbiology and Immunology. 209, 3, p. 243-263 21 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

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Linking Plant Functional Ecology to Island Biogeography

Ottaviani, G., Keppel, G., Götzenberger, L., Harrison, S., Opedal, O. H., Conti, L., Liancourt, P., Klimesova, J., Silveira, F. A. O., Jimenez-Alfaro, B., Negoita, L., Dolezal, J., Hajek, M., Ibanez, T., Mendez-Castro, F. E. & Chytry, M., Apr 2020, In : Trends in Plant Science. 25, 4, p. 329-339 11 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Mapping place values: 10 lessons from two decades of public participation GIS empirical research

Brown, G., Reed, P. & Raymond, C. M., Mar 2020, In : Applied Geography. 116, 8 p., 102156.

Research output: Contribution to journalReview ArticleScientificpeer-review

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Mechanisms of Carbon Sequestration in Highly Organic Ecosystems – Importance of Chemical Ecology

Adamczyk, B., Heinonsalo, J. & Simon, J., 14 Apr 2020, In : Chemistryopen. 9, 4, p. 464-469 6 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

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Neuromuscular Diseases Due to Chaperone Mutations: A Review and Some New Results

Sarparanta, J., Jonson, P. H., Kawan, S. & Udd, B., Feb 2020, In : International Journal of Molecular Sciences. 21, 4, 78 p., 1409.

Research output: Contribution to journalReview ArticleScientificpeer-review

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Pleomorphic archaeal viruses: the family Pleolipoviridae is expanding by seven new species

Demina, T. & Oksanen, H. M., 2020, (Accepted/In press) In : Archives of Virology.

Research output: Contribution to journalReview ArticleScientificpeer-review

Storm impacts on phytoplankton community dynamics in lakes

Stockwell, J. D., Doubek, J. P., Adrian, R., Anneville, O., Carey, C. C., Carvalho, L., Domis, L. D. S., Dur, G., Frassl, M. A., Grossart, H-P., Ibelings, B. W., Lajeunesse, M. J., Lewandowska, A., Llames, M. E., Matsuzaki, S-I. S., Nodine, E. R., Noges, P., Patil, V. P., Pomati, F., Rinke, K. & 19 others, Rudstam, L. G., Rusak, J. A., Salmaso, N., Seltmann, C. T., Straile, D., Thackeray, S. J., Thiery, W., Urrutia-Cordero, P., Venail, P., Verburg, P., Woolway, R. I., Zohary, T., Andersen, M. R., Bhattacharya, R., Hejzlar, J., Janatian, N., Kpodonu, A. T. N. K., Williamson, T. J. & Wilson, H. L., May 2020, In : Global Change Biology. 26, 5, p. 2756-2784 29 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

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Taxonomy of prokaryotic viruses: 2018-2019 update from the ICTV Bacterial and Archaeal Viruses Subcommittee

Adriaenssens, E. M., Sullivan, M. B., Knezevic, P., van Zyl, L. J., Sarkar, BL., Dutilh, B. E., Alfenas-Zerbini, P., Lobocka, M., Tong, Y., Brister, J. R., Moreno Switt, A. I., Klumpp, J., Aziz, R. K., Barylski, J., Uchiyama, J., Edwards, R. A., Kropinski, A. M., Petty, N. K., Clokie, M. R. C., Kushkina, A. I. & 16 others, Morozova, V. V., Duffy, S., Gillis, A., Rumnieks, J., Kurtböke, İ., Chanishvili, N., Goodridge, L., Wittmann, J., Lavigne, R., Jang, H. B., Prangishvili, D., Enault, F., Turner, D., Poranen, M., Oksanen, H. M. & Krupovic, M., 2020, In : Archives of Virology. 165, 5, p. 1253-1260 8 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Open Access
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TIGIT as an emerging immune checkpoint

Harjunpää, H. & Guillerey, C., May 2020, In : Clinical and Experimental Immunology. 200, 2, p. 108-119 12 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Understanding Admixture: Haplodiploidy to the Rescue

Nouhaud, P., Blanckaert, A., Bank, C. & Kulmuni, J., Jan 2020, In : Trends in Ecology & Evolution. 35, 1, p. 34-42 9 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

2019

A collaborative approach to bring insights from local observations of climate change impacts into global climate change research

Reyes-Garcia, V., Garcia-del-Amo, D., Benyei, P., Fernandez-Llamazares, A., Gravani, K., Junqueira, A. B., Labeyrie, V., Li, X., Matias, D. M. S., McAlvay, A., Mortyn, P. G., Porcuna-Ferrer, A., Schlingmann, A. & Soleymani-Fard, R., Aug 2019, In : Current Opinion in Environmental Sustainability. 39, p. 1-8 8 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

A critical review of discursive approaches in energy transitions

Isoaho, K. L. H. & Karhunmaa, K. M. A., May 2019, In : Energy Policy. 128, p. 930-942 13 p., 128.

Research output: Contribution to journalReview ArticleScientificpeer-review

Open Access
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Adenovirus flow in host cell networks

Flatt, J. W. & Butcher, S. J., Feb 2019, In : Open biology. 9, 2, 11 p., 190012.

Research output: Contribution to journalReview ArticleScientificpeer-review

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Advances in high‑throughput methods for the identification of virus receptors

Barrass, S. & Butcher, S., 21 Dec 2019, In : Medical Microbiology and Immunology.

Research output: Contribution to journalReview ArticleScientificpeer-review

Open Access
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Alternative respiratory chain enzymes: Therapeutic potential and possible pitfalls

Saari, S., Garcia, G. S., Bremer, K., Chioda, M. M., Andjelković, A., Debes, P. V., Nikinmaa, M., Szibor, M., Dufour, E., Rustin, P., Oliveira, M. T. & Jacobs, H. T., 1 Apr 2019, In : Biochimica et Biophysica Acta. Molecular Basis of Disease. 1865, 4, p. 854-866 13 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

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Application of the isotope pairing technique in sediments: Use, challenges, and new directions

Robertson, E. K., Bartoli, M., Bruechert, V., Dalsgaard, T., Hall, P. O. J., Hellemann, D., Hietanen, S., Zilius, M. & Conley, D. J., Feb 2019, In : Limnology and Oceanography: Methods. 17, 2, p. 112-136 25 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

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Assessment of Uncertainties in Scenario Simulations of Biogeochemical Cycles in the Baltic Sea

Meier, H. E. M., Edman, M., Eilola, K., Placke, M., Neumann, T., Andersson, H. C., Brunnabend, S-E., Dieterich, C., Frauen, C., Friedland, R., Gröger, M., Gustafsson, B. G., Gustafsson, E., Isaev, A., Kniebusch, M., Kuznetsov, I., Müller-Karulis, B., Naumann, M., Omstedt, A., Ryabchenko, V. & 2 others, Saraiva, S. & Savchuk, O. P., 4 Mar 2019, In : Frontiers in Marine Science. 6, 29 p., 46.

Research output: Contribution to journalReview ArticleScientificpeer-review

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Asymmetrical flow field-flow fractionation on virus and virus-like particle applications

Eskelin, K., Poranen, M. & Oksanen, H. M., 2019, In : Microorganisms. 7, 11, 555.

Research output: Contribution to journalReview ArticleScientificpeer-review

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Autophagy: supporting cellular and organismal homeostasis by self-eating

Eskelinen, E-L., Jun 2019, In : International Journal of Biochemistry & Cell Biology. 111, p. 1-10 10 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

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Beta2-Integrins and Interacting Proteins in Leukocyte Trafficking, Immune Suppression, and Immunodeficiency Disease

Fagerholm, S. C., Guenther, C., Asens, M. L., Savinko, T. & Uotila, L. M., 19 Feb 2019, In : Frontiers in Immunology. 10, 10 p., 254.

Research output: Contribution to journalReview ArticleScientificpeer-review

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Biocultural diversity: a novel concept to assess human-nature interrelations, nature conservation and stewardship in cities

Elands, B. H. M., Vierikko, K., Andersson, E., Fischer, L. K., Gonçalves, P., Haase, D., Kowarik, I., Luz, A. C., Niemelä, J., Santos-Reis, M. & Wiersum, K. F., Apr 2019, In : Urban Forestry & Urban Greening. 40, p. 29-34 6 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

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Cell Adhesion Molecules and Their Roles and Regulation in the Immune and Tumor Microenvironment

Harjunpää, H., Llort Asens, M., Guenther, C. & Fagerholm, S. C., 22 May 2019, In : Frontiers in Immunology. 10, 24 p., 1078.

Research output: Contribution to journalReview ArticleScientificpeer-review

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Competition between marine mammals and fisheries in contemporary harvested marine ecosystems

Jusufovski, D., Saavedra, C. & Kuparinen, A., 2019, In : Marine Ecology. Progress Series. 627, p. 207-232 26 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

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Crosstalk of Intercellular Signaling Pathways in the Generation of Midbrain Dopaminergic Neurons In Vivo and from Stem Cells

Brodski, C., Blaess, S., Partanen, J. & Prakash, N., 15 Jan 2019, In : Journal of Developmental Biology. 7, 1, 34 p., 3.

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Dead wood fungi in North America: an insight into research and conservation potential

Moose, R. A., Schigel, D., Kirby, L. J. & Shumskaya, M., 7 Jan 2019, In : Nature Conservation. 32, p. 1-17 17 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

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Delta TraitSDMs: species distribution models that account for local adaptation and phenotypic plasticity

Garzon, M. B., Robson, T. M. & Hampe, A., Jun 2019, In : New Phytologist. 222, 4, p. 1757-1765 9 p.

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Diversity in warning coloration: selective paradox or the norm?

Briolat, E. S., Burdfield-Steel, E. R., Paul, S. C., Rönkä, K. H., Seymore, B. M., Stankowich, T. & Stuckert, A. M. M., Apr 2019, In : Biological Reviews. 94, 2, p. 388-414 27 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

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Drought impacts on tree phloem: from cell-level responses to ecological significance

Salmon, Y., Dietrich, L., Sevanto, S., Hölttä, T., Dannoura, M. & Epron, D., Feb 2019, In : Tree Physiology. 39, 2, p. 173-191 19 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

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Dysregulated Ca2+-Permeable AMPA Receptor Signaling in Neural Progenitors Modeling Fragile X Syndrome

Danesi, C. E., Keinänen, K. P. & Castren, M. L., 8 Feb 2019, In : Frontiers in Synaptic Neuroscience. 11, 8 p., 2.

Research output: Contribution to journalReview ArticleScientificpeer-review

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Effectiveness of nitrogen fixation in rhizobia

Lindstroem, K. & Mousavi, S. A., 4 Dec 2019, In : Microbial Biotechnology. 22 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

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Eliminating vicine and convicine, the main anti-nutritional factors restricting faba bean usage

Khazaei, H., Purves, R. W., Hughes, J., Link, W., O'Sullivan, D. M., Schulman, A. H., Bjornsdotter, E., Geu-Flores, F., Nadzieja, M., Andersen, S. U., Stougaard, J., Vandenberg, A. & Stoddard, F. L., Sep 2019, In : Trends in Food Science & Technology. 91, p. 549-556 8 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

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Evolution of dispersal in ants (Hymenoptera: Formicidae): a review on the dispersal strategies of sessile superorganisms

Hakala, S. M., Seppä, P. & Helanterä, H., 2019, In : Myrmecological news. 29, p. 35-55 21 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

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Forest Tree Microbiomes and Associated Fungal Endophytes: Functional Roles and Impact on Forest Health

Terhonen, E., Blumenstein, K., Kovalchuk, A. & Asiegbu, F. O., Jan 2019, In : Forests. 10, 1, 32 p., 42.

Research output: Contribution to journalReview ArticleScientificpeer-review

Open Access
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Glutamate transporters: a broad review of the most recent archaeal and human structures

Pavic, A., Holmes, A. O. M., Postis, V. L. G. & Goldman, A., 30 Aug 2019, In : Biochemical Society Transactions. 47, p. 1197-1207 11 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Open Access

Half a Century of Research on Membrane-Containing Bacteriophages: Bringing New Concepts to Modern Virology

Mäntynen, S., Sundberg, L-R., Oksanen, H. M. & Poranen, M. M., 2019, In : Viruses. 11, 1, 17 p., 76.

Research output: Contribution to journalReview ArticleScientificpeer-review

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Handbook for the measurement of macrofungal functional traits: A start with basidiomycete wood fungi

Dawson, S. K., Boddy, L., Halbwachs, H., Bässler, C., Andrew, C., Crowther, T. W., Heilmann-Clausen, J., Nordén, J., Ovaskainen, O. & Jönsson, M., Mar 2019, In : Functional Ecology. 33, 3, p. 372-387 16 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

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Importance of Sequence and Timing in Parasite Coinfections

Karvonen, A., Jokela, J. & Laine, A-L., Feb 2019, In : Trends in Parasitology. 35, 2, p. 109-118 10 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Inflammation and its resolution in atherosclerosis: mediators and therapeutic opportunities

Back, M., Yurdagul, A., Tabas, I., Oorni, K. & Kovanen, P. T., Jul 2019, In : Nature reviews. Cardiology. 16, 7, p. 389-406 18 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

In vitro production of synthetic viral RNAs and their delivery into mammalian cells and the application of viral RNAs in the study of innate interferon responses

Jiang, M., Österlund, P., Poranen, M. & Julkunen, I., 2019, (Accepted/In press) In : Methods.

Research output: Contribution to journalReview ArticleScientificpeer-review

Luontopohjaisia ratkaisuja immuunijärjestelmän häiriöihin

Puhakka, R., Grönroos, M., Roslund, M., Parajuli, A., Saarenpää, M., Soininen, L. & Sinkkonen, A., 18 Dec 2019, In : Alue ja ympäristö. 48, 2, p. 106-111 5 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

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Mate choice in a polluted world: consequences for individuals, populations and communities

Candolin, U. & Wong, B. B. M., 16 Sep 2019, In : Philosophical Transactions of the Royal Society. Biological Sciences. 374, 1781, 9 p., 20180055.

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Metabolomics Applied to the Study of Extracellular Vesicles

Williams, C., Palviainen, M., Reichardt, N-C., Siljander, P. R-M. & Falcon-Perez, J. M., 12 Nov 2019, In : Metabolites. 9, 11, 14 p., 276.

Research output: Contribution to journalReview ArticleScientificpeer-review

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Methane emissions from tree stems: a new frontier in the global carbon cycle

Barba, J., Bradford, M., Brewer, P., Bruhn, D., Covey, K., van Haren, J., Megonigal, P., Norgaard Mikkelsen, T., Pangala, S., Pihlatie, M. K., Poulter, B., Rivas-Ubach, A., Schadt, C., Terazawa, K., Warner, D., Chang, Z. & Vargas, R., Apr 2019, In : New Phytologist. 222, 1, p. 18-28 11 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Minimal standards for the description of new genera and species of rhizobia and agrobacteria

de Lajudie, P. M., Andrews, M., Ardley, J., Eardly, B., Jumas-Bilak, E., Kuzmanovic, N., Lassalle, R., Lindstrom, K., Mhamdi, R., Martinez-Romero, E., Moulin, L., Mousavi, S. A., Nesme, X., Peix, A., Pulawska, J., Steenkamp, E., Stepkowski, T., Tian, C-F., Vinuesa, P., Wei, G. & 3 others, Willems, A., Zili, J. & Young, P., Jul 2019, In : International Journal of Systematic and Evolutionary Microbiology. 69, 7, p. 1852-1863 12 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Ozone depletion, ultraviolet radiation, climate change and prospects for a sustainable future

Barnes, P. W., Williamson, C. E., Lucas, R. M., Robinson, S. A., Madronich, S., Paul, N. D., Bornman, J. F., Bais, A. F., Sulzberger, B., Wilson, S. R., Andrady, A. L., McKenzie, R. L., Neale, P. J., Austin, A. T., Bernhard, G. H., Solomon, K. R., Neale, R. E., Young, P. J., Norval, M., Rhodes, L. E. & 19 others, Hylander, S., Rose, K. C., Longstreth, J., Aucamp, P. J., Ballare, C. L., Cory, R. M., Flint, S. D., de Gruijl, F. R., Haeder, D-P., Heikkila, A. M., Jansen, M. A. K., Pandey, K. K., Robson, T. M., Sinclair, C. A., Wangberg, S-A., Worrest, R. C., Yazar, S., Young, A. R. & Zepp, R. G., Jul 2019, In : Nature sustainability. 2, 7, p. 569-579 11 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

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