Fungal Co-life, Omics and Ecophysiology Research Group

  • Viikinkaari 9, PO Box 56, Viikki Biocenter 1, Department of Microbiology

    FI-00014 University of Helsinki

    Finland

Publications

2020

Enzyme activity profiles produced on wood and straw by four fungi of different decay strategies

Veloz Villavicencio, E. E., Mali, T., Mattila, H. & Lundell, T., 2 Jan 2020, In : Microorganisms. 8, 1, 18 p., 73.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Hypoxia is regulating enzymatic wood decomposition and intracellular carbohydrate metabolism in filamentous white rot fungus

Mattila, H., Mäkinen, M. & Lundell, T., 24 Feb 2020, In : Biotechnology for Biofuels. 13, 1, 17 p., 26.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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2019
Open Access
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Genome description of Phlebia radiata 79 with comparative genomics analysis on lignocellulose decomposition machinery of phlebioid fungi

Mäkinen, M., Kuuskeri, J., Laine, P., Smolander, O-P., Kovalchuk, A., Zeng, Z., Asiegbu, F., Paulin, L., Auvinen, P. & Lundell, T., 28 May 2019, In : BMC Genomics. 20, 22 p., 430.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Lignocellulose bioconversion to ethanol by a fungal single-step consolidated method tested with waste substrates and co-culture experiments

Mattila, H. K., Kačar, D., Mali, T. L. E. & Lundell, T. K., 18 Oct 2018, In : AIMS Energy. 6, 5, p. 866-879 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Polyporales brown rot species Fomitopsis pinicola: enzyme activity profiles, oxalic acid production, and Fe3+-reducing metabolite secretion

Shah, F. H., Mali, T. L. E. & Lundell, T. K., Apr 2018, In : Applied and Environmental Microbiology. 84, 8, 14 p., UNSP e02662-17.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Puunlahottajat

Lundell, T. & Mäkelä, M., 2018, Sienten biologia. Timonen, S. & Valkonen, J. (eds.). 2. ed. Helsinki: Gaudeamus, p. 259-279

Research output: Chapter in Book/Report/Conference proceedingChapterProfessional

Open Access
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Transcription of lignocellulose-decomposition associated genes, enzyme activities and production of ethanol upon bioconversion of waste substrate by Phlebia radiata

Mäkinen, M. A., Risulainen, N., Mattila, H. K. & Lundell, T. K., Jul 2018, In : Applied Microbiology and Biotechnology. 102, 13, p. 5657-5672 16 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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2017

Engineering towards catalytic use of fungal class-II peroxidases for dye-decolorizing and conversion of lignin model compounds

Lundell, T. K., Bentley, E., Hilden, S. K., Rytioja, J. T., Kuuskeri, J. T., Ufot, U. F., Nousiainen, P. A., Hofrichter, M., Wahlsten, M. P-V., Doyle, W. & Smith, A. T., 2017, In : Current Biotechnology. 6, 2, p. 116-117 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Interactions affect hyphal growth and enzyme profiles in combinations of coniferous wood-decaying fungi of Agaricomycetes

Mali, T., Kuuskeri, J., Shah, F. & Lundell, T. K., 27 Sep 2017, In : PLoS One. 12, 9, 21 p., e0185171.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Kokeellisen evoluution laboratoriokurssi Viikissä

Cairns, J., Hiltunen, T. J. & Virolainen, T. L. E., Mar 2017, In : Inocula : mikrobiologikillan julkaisu.. 2017, 1, p. 6-7 2 p.

Research output: Contribution to journalArticleProfessional

Open Access
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Time-scale dynamics of proteome and transcriptome of the white-rot fungus Phlebia radiata: growth on spruce wood and decay effect on lignocellulose

Kuuskeri, J., Häkkinen, M., Laine, P., Smolander, O-P., Tamene, F., Miettinen, S., Nousiainen, P., Kemell, M., Auvinen, P. & Lundell, T., 5 Sep 2016, In : Biotechnology for Biofuels. 9, 22 p., 192.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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2015

Lignocellulose-converting enzyme activity profiles correlate with molecular systematics and phylogeny grouping in the incoherent genus Phlebia (Polyporales, Basidiomycota)

Kuuskeri, J. T., Mäkelä, M. R., Isotalo, J. M., Oksanen, I. M. & Lundell, T. K., 19 Oct 2015, In : BMC Microbiology. 15, 18 p., 217.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Respiration rate determinations suggest Heterobasidion parviporum subpopulations have potential to adapt to global warming

Müller, M., Hamberg, L., Kuuskeri, J. T., LaPorta, N., Pavlov, I. & Korhonen, K., 2015, In : Forest Pathology. 45, 6, p. 515-524 10 p.

Research output: Contribution to journalArticleScientificpeer-review

2014

Phenolic mediators boost manganese and versatile peroxidase catalyzed oxidation of lignocellulosic materials

Nousiainen, P. A., Kontro, J. H. S., Manner, M. H., Rytioja, J. T., Mäkelä, M. R., Maijala, P. M., Lundell, T. K., Hatakka, A. I. & Sipilä, A. J., 2014, Unknown host publication.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

2012

Phenolic mediators enhance the manganese peroxidase catalyzed oxidation of recalcitrant lignin model compounds

Nousiainen, P. A., Kontro, J. H. S., Manner, M. H., Mäkelä, M. R., Hilden, S. K., Maijala, P. M., Lundell, T. K., Hatakka, A. I. & Sipilä, A. J., 2012, OxiZymes 16.-19.9. 2012, proceedings book p. 123. Poster. Marseille, p. 123-123 1 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientific

2010

Laccases from the white rot fungi Physisporinus rivulosus and Phlebia radiata: molecular characterization of thermotolerant oxidoreductases and reactions with mediator compounds

Hilden, K., Lundell, T., Mäkelä, M., Rytioja, J., Nousiainen, P. A., Sipilä, J., Chernykh, A., Golovleva, L., Archer, D. & Hatakka, A., 2010, 1st Symposium on Biotechnology Applied to Lignocelluloses, Lignobiotech One. p. 77 1 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientific

Molecular characterisation of thermotolerant laccases from the biopulping fungus Physisporinus rivulosus

Hilden, K., Lundell, T., Mäkelä, M., Rytioja, J., Nousiainen, P. A., Sipilä, J., Archer, D., Chernykh, A., Golovleva, L. & Hatakka, A., 2010, Oxidative enzymes as sustainable industrial biocatalysts (OESIB). p. 127 1 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientific

Natural mediators in oxidoreductase-catalysed degradation of lignocellulosic materials: A study on lignin model compounds

Nousiainen, P. A., Rainio, A., Rytioja, J., Kontro, J., Hilden, K., Hatakka, A., Lundell, T. & Sipilä, J., 2010, 1st Symposium on Biotechnology Applied to Lignocelluloses, Lignobiotech One. p. 85 1 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientific

On the role of natural mediators in oxidoreductase catalysed degradation of lignocellulosic materials: A Study on lignin model compounds

Nousiainen, P. A., Rainio, A., Kontro, J., Rytioja, J., Rytioja, J., Uzan, E., Hatakka, A., Lundell, T., Lomascolo, A. & Sipilä, J., 2010, The 11th European Workshop on Lignosellulosics and Pulp 2010. p. 89-92 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientific

2004

Molecular cloning and characterization of a new laccase encoding gene of the white-rot fungus Phlebia radiata

Hilden, K., Mäkelä, M., Hatakka, A. & Lundell, T., 2004, Oxizymes in Naples: 2nd European meeting. Vahala, P., Kruus, K. & Sannia, G. (eds.). Naples, Italy, p. 30 1 p. (Oxizymes).

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientific

2003

Detection of acetylcholinesterase inhibitors in natural products by a TLC bioautographical method

Järvinen, P. P., Sundquist, V., Lundell, T. K., Mettälä, A. H., Galkin, S., Hatakka, A. I. & Vuorela, P. M., Jun 2003, In : European Journal of Pharmaceutical Sciences. 19, Supplement 1, p. S30-S30 1 p.

Research output: Contribution to journalConference articleScientific

Dibenzodioxocin lignin substructure is abundant in inner part of secondary wall in Norway spruce and Silver birch xylem

Kukkola, E., Koutaniemi, S., Pöllänen, E., Gustafsson, M., Karhunen, P., Lundell, T., Saranpää, P., Kilpeläinen, I., Teeri, T. & Fagerstedt, K., 2003, Building a Cell Wall: Program and Proceedings of the final Workshop. Cost Action E20 Wood Fibre Cell Wall Structure. Helsinki, Finland, p. 45 1 p. P5. (COST Action E20).

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientific

Enzymatic and wood degrading capabilities of a novel fungus suitable for biopulping of wood chips

Hatakka, A., Hakala, T. K., Salo, V., Lundell, T. & Maijala, P., 2003, 1st FEMS Congress of European Microbiologists. the Netherlands: Elsevier, p. 84 A23-2. (FEMS Congress of European Microbiologists; no. 1).

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientific

Immunolocalization of dibenzodioxocin structures in lignifying Norway spruce xylem using confocal laser scanning and electron microscopy

Kukkola, E., Koutaniemi, S., Pöllänen, E. K., Gustafsson, M., Karhunen, P., Lundell, T., Pekka, S., Brunow, G., Teeri, T. & Fagerstedt, K., 2003, Building a Cell Wall: Program and Proceedings of the final Workshop. Cost Action E20 Wood Fibre Cell Wall Structure. Helsinki, Finland, 1 p. (COST E20 Action).

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientific

Localization of peroxidases in developing xylem of Norway spruce (Picea abies)

Lehtonen, M., Hilden, K., Marjamaa, K., Fagerstedt, K., Saranpää, P. & Lundell, T., 2003, Building a Cell Wall: Program and Proceedings of the final Workshop. Cost Action E20 Wood Fibre Cell Wall Structure. Helsinki, Finland, p. 18 1 p. L6. (COST Action E20).

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientific

Phlebia radiata MnP and LiP enzymes: phylogenetic diversity and a new cluster within the fungal ligninolytic peroxidases

Lundell, T., Hilden, K., Hatakka, A. & Martínez, A., 2003, 1st FEMS Congress of European Microbiologists. the Netherlands: Elsevier, p. 85 A23-3. (FEMS Congerss of European Microbiologists; no. 1).

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientific

2002

Characteristics of a new white-rot fungus with potential in biopulping

Maijala, P., Hakala, T. K., Salo, V., Lundell, T. & Hatakka, A., 2002, Biotechnology for improving pulp & paper processing: Conference Proceedings of the Workshop of COST E23 Action on Biotechnology in the Pulp and Paper Industry. Centre Technique du Papier, p. 10-15

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Manganese peroxidase - The key enzyme in lignin biodegradation and biopulping by white-rot fungi?

Hakala, T., Lundell, T., Hofrichter, M. & Maijala, P., 2002, In : Abstracts of papers of the American Chemical Society . 223, p. U123-U123 1 p.

Research output: Contribution to journalArticleScientific

Preface

Hatakka, A. I., Lundell, T. K. & Jeffries, T., 16 Apr 2002, Recent Advances in Lignin Biodegradation: Enzyme and Microbial Technology. Elsevier Academic Press, Vol. 30. p. 423-424 2 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientific

2001

Conversion of milled pine wood by manganese peroxidase from Phlebia radiata

Hofrichter, M., Lundell, T. & Hatakka, A., 2001, In : Applied and Environmental Microbiology. 67, p. 4588-4593 6 p.

Research output: Contribution to journalArticleScientificpeer-review

1999

Fungal enzyme systems in lignin biodegradation

Hatakka, A., Vares, T. & Lundell, T., 1999, Biochemical Principles and Mechanisms of Biosynthesis and Biodegradation of Polymers. Steinbüchel, A. (ed.). Weinheim: Wiley-VCH, p. 273-283

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

1996

Fungal pretreatment of non-woody plants for chemical pulping and papermaking

Hatakka, A. I., Mettälä, A. H., Vares, T., Kalsi, M., Lundell, T. K. & Paavilainen, L., 24 Mar 1996, ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY. Washington: American Chemical Society, Vol. 211. p. 203-CELL 2 p. (ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY; vol. 211, no. 1).

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientific

1995

Bioopulping of non-woody plants and expression of fungal ligninolytic enzymes

Hatakka, A., Mettälä, A., Vares, T., Kalsi, M. J., Lundell, T. & Paavilainen, L., 1995, Fourth Brazilian Symposium on the Chemistry of Lignins and other Wood Components. Recife, Brazil: UFPE, Vol. V. p. 143-151

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

The Manganese Binding Site of Manganese Peroxidase: Characterization of an Asp179Asn Site-Directed Mutant Protein

Kusters-van Someren, M., Kishi, K., Lundell, T. K. & Gold, M., Aug 1995, In : Biochemistry. 34, 33, p. 10620-10627 8 p.

Research output: Contribution to journalArticleScientificpeer-review

1994

Do carbohydrates play a role in the lignin peroxidase cycle? Redox catalysis in the endergonic region of the driving force

Schoemaker, H. E., Lundell, T., Floris, R., Glumoff, T., Winterhalter, K. H. & Piontek, K., 1994, In : Bioorganic & Medicinal Chemistry. 2, 6, p. 509-519 11 p.

Research output: Contribution to journalArticleScientificpeer-review

The oxidation of veratryl alcohol, dimeric lignin models and lignin by lignin peroxidase - The redox cycle revisited.

Schoemaker, H. E., Lundell, T. K., Hatakka, A. I. & Piontek, K., 1994, In : FEMS Microbiology Reviews. 13, p. 321-332 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Lignin peroxidase L3 from Phlebia radiata: degradation of lignin model compounds and kinetic characterization of the enzyme

Lundell, T., Schoemaker, H., Wever, R., Floris, R., Brunow, G. & Hatakka, A., 1993, Lignin Biodegradation and Transformation. Duarte, J. C., Ferreira, M. C. & Ander, P. (eds.). Forbitec, p. 125-128

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Production of multiple lignin peroxidases by the white-rot fungus Phlebia ochraceofulva

Vares, T., Lundell, T. K. & Hatakka, A. I., 1993, In : Enzyme and microbial technology. 15, 8, p. 664-669 6 p.

Research output: Contribution to journalArticleScientificpeer-review

1992

Degradation of macromolecular lignin models by lignin peroxidase from Phlebia radiata and catalytic properties of the enzyme

Lundell, T., Kilpeläinen, I., Brunow, G., Schoemaker, H. E. & Hatakka, A., 1992, Biotechnology in Pulp and Paper Industry: Proceedings of the Fifth International Conference on Biotechnology in Pulp and Paper Industry. Kuwahara, M. & Shimada, M. (eds.). Tokyo, Japan: UNI Publishers Co Ltd, p. 315-320 6 p. 50

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Demethoxylation of lignin by peroxidases from Phlebia radiata and Phanerochaete chrysosporium

Ander, P., Hatakka, A., Lundell, T., Petterson, B., Stalmasek, M. & Volc, J., 1992, Lignocellulosics: Science, technology, development and use. Kennedy, J. F., Phillips, G. O. & Williams, P. A. (eds.). Chichester: Ellis Horwood Limited, p. 109-119

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

INFLUENCE OF LIGNIN-RELATED AROMATIC-COMPOUNDS ON THE PRODUCTION OF LIGNINOLYTIC ENZYMES BY PHLEBIA-RADIATA

ROGALSKI, J., LUNDELL, T., LEONOWICZ, A. & HATAKKA, A., 1992, Lignocellulosics: Science, Technology, Development and Use. Kennedy, J. F., Phillips, G. O. & Williams, P. A. (eds.). Chichester: Ellis Horwood, p. 55-60 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Novel heme-containing enzyme possibly involved in lignin degradation by the white-rot fungus Junghuhnia separabilima

Vares, T., Lundell, T. K. & Hatakka, A. I., 1992, In : FEMS Microbiology Letters. 99, 1, p. 53-58 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Production and characterization of lignin peroxidases and laccases from the white-rot fungi Phlebia radiata and Phlebia (Merulius) tremellosa

Hatakka, A., Niemenmaa, O., Lankinen, P. & Lundell, T., 1992, Lignocellulosics: Science, technology, development and use. Kennedy, J. F., Phillips, G. O. & Williams, P. A. (eds.). Chichester: Ellis Horwood Limited, p. 45-53

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review