Projects per year
International and National Collaboration
Publications and projects within past five years.
Profiles
Veli Mäkinen
- Department of Computer Science - Professor
- Helsinki Institute for Information Technology
- Genome-scale Algorithmics research group / Veli Mäkinen
- Bioinformatics
- Doctoral Programme in Computer Science - Supervisor for doctoral programme
Person: UH, U4 Research and teaching staff
Tuukka Norri
- Department of Computer Science - Doctoral Student
- Genome-scale Algorithmics research group / Veli Mäkinen
- Doctoral Programme in Computer Science
Person: U1 Research and teaching staff, UH
Projects
Algoritmeja ja tietorakenteita yksilöiden genomien tutkimukseen
01/08/2010 → 31/12/2012
Project: Research project
Publications
Fast Indexes for Gapped Pattern Matching
Cáceres, M., Puglisi, S. & Zhukova, B., 17 Jan 2020, p. 493-504. 12 p.Research output: Conference materials › Paper
Finding all maximal perfect haplotype blocks in linear time
Alanko, J., Bannai, H., Cazaux, B., Peterlongo, P. & Stoye, J., 10 Feb 2020, In : Algorithms for Molecular Biology. 15, 1, 7 p., 2.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access
File
Regular Languages meet Prefix Sorting
Alanko, J., Prezza, N., Policriti, A. & D’Agostino, G., 2020, (Accepted/In press) Proceedings of the Thirty-First Annual ACM-SIAM Symposium on Discrete Algorithms. Society for Industrial and Applied Mathematics, 2020.Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review
Tight Upper and Lower Bounds on Suffix Tree Breadth
Badkobeh, G., Gawrychowski, P., Kärkkäinen, J., Puglisi, S. & Zhukova, B., 23 Jan 2020, (Accepted/In press) In : Theoretical Computer Science.Research output: Contribution to journal › Article › Scientific › peer-review
A framework for space-efficient variable-order Markov models
Cunial, F., Alanko, J. & Belazzougui, D., 15 Nov 2019, In : Bioinformatics. 35, 22, p. 4607-4616 10 p.Research output: Contribution to journal › Article › Scientific › peer-review
Activities
Research Foundation Flanders (External organisation)
Veli Mäkinen (Assessment)Jun 2020
Activity: Membership types › Membership or other role in national/international committee, council, board
SPIRE 2020 (Event)
Veli Mäkinen (Programme Committee Member)2020
Activity: Publication peer-review and editorial work types › Peer review of manuscripts
ISMB 2020 (Event)
Veli Mäkinen (Reviewer)Feb 2020
Activity: Publication peer-review and editorial work types › Peer review of manuscripts
WABI 2020 (Event)
Veli Mäkinen (Programme Committee Member)2020
Activity: Publication peer-review and editorial work types › Peer review of manuscripts
Algorithms (Journal)
Veli Mäkinen (Reviewer)Apr 2020
Activity: Publication peer-review and editorial work types › Peer review of manuscripts
Prizes
Google Scholarship for Students with Disabilities 2015
Anna Kuosmanen (Recipient), 27 May 2015
Prize: Prizes and awards
Press / Media
Repeat- and Error-Aware Comparison of Deletions
15/05/2015
1 item of Media coverage
Press/Media: Press / Media