Projects per year
Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
Profiles
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Jarno Alanko
- Department of Computer Science - Postdoctoral Researcher
- Algorithmic Bioinformatics
- Genome-scale Algorithmics research group / Veli Mäkinen
Person: U2 Teaching and research staff, UH
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Veli Mäkinen
- Department of Computer Science - Professor, Title of Docent
- Helsinki Institute for Information Technology
- Algorithmic Bioinformatics
- Bioinformatics
- Genome-scale Algorithmics research group / Veli Mäkinen
- Doctoral Programme in Integrative Life Science - Supervisor for doctoral programme
- Doctoral Programme in Computer Science - Supervisor for doctoral programme
Person: UH , U4 Research and teaching staff
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Tuukka Norri
- ATG - Applied Tumor Genomics - Postdoctoral Researcher
- Algorithmic Bioinformatics
- Genome-scale Algorithmics research group / Veli Mäkinen
Person: U2 Teaching and research staff, UH
Projects
- 2 Finished
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Sekvenssianalyysin uudet menetelmät ja laajennukset
Mäkinen, V. (Project manager)
01/09/2017 → 31/08/2021
Project: Research project
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Algoritmeja ja tietorakenteita yksilöiden genomien tutkimukseen
Mäkinen, V. (Project manager)
01/08/2010 → 31/12/2012
Project: Research project
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Batched k-mer lookup on the Spectral Burrows-Wheeler Transform
Alanko, J., Biagi, E., Mackenzie, J. & Puglisi, S., 7 Jan 2025, 2025 Proceedings of the Symposium on Algorithm Engineering and Experiments (ALENEX). Chowdhury, R., Berry, J., Hanauer, K. & Ren, B. (eds.). Society for Industrial and Applied Mathematics, p. 95 - 106 12 p. ( Proceedings of the Workshop on Algorithm Engineering and Experiments).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review
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Finimizers: Variable-Length Bounded-Frequency Minimizers for k-mer Sets
Alanko, J. N., Biagi, E. & Puglisi, S. J., 2025, In: IEEE/ACM Transactions on Computational Biology and Bioinformatics. 22, 2, p. 899-910 12 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Structural features of somatic and germline retrotransposition events in humans
Nummi, P., Cajuso, T., Norri, T., Taira, A., Kuisma, H., Välimäki, N., Lepistö, A., Renkonen-Sinisalo, L., Koskensalo, S., Seppälä, T. T., Ristimäki, A., Tahkola, K., Mattila, A., Böhm, J., Mecklin, J. P., Siili, E., Pasanen, A., Heikinheimo, O., Bützow, R. & Karhu, A. & 3 others, , 22 Apr 2025, In: Mobile DNA. 16, 19 p., 20.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access -
A tendency toward evening chronotype associates with less healthy diet among preschoolers: cross-sectional findings from the DAGIS study
Abdollahi, A. M., Li, X., Merikanto, I., Vepsäläinen, H., Lehto, R., Rahkola, J., Nissinen, K., Kanerva, N., Roos, E. & Erkkola, M., 2024, In: Sleep advances. 5, 1, 10 p., zpae026.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Computing the LCP Array of a Labeled Graph
Alanko, J., Cenzato, D., Cotumaccio, N., Kim, S.-H., Manzini, G. & Prezza, N., 2024, Annual Symposium on Combinatorial Pattern Matching (CPM). Schloss Dagstuhl - Leibniz-Zentrum für Informatik, (Leibniz International Proceedings in Informatics (LIPIcs); vol. 296).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review
Open AccessFile
Activities
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Genome Research (Journal)
Mäkinen, V. (Reviewer)
Apr 2025Activity: Publication peer-review and editorial work types › Peer review of manuscripts
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ISMB/ECCB 2025 (Event)
Mäkinen, V. (Programme Committee Member)
Feb 2025Activity: Publication peer-review and editorial work types › Peer review of manuscripts
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ISMB 2024 (Event)
Mäkinen, V. (Programme Committee Member)
Feb 2024Activity: Publication peer-review and editorial work types › Peer review of manuscripts
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Algorithms (Journal)
Mäkinen, V. (Reviewer)
Oct 2024Activity: Publication peer-review and editorial work types › Peer review of manuscripts
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65th IEEE Symposium on Foundations of Computer Science (FOCS) 2024 (Event)
Mäkinen, V. (Reviewer)
May 2024Activity: Publication peer-review and editorial work types › Peer review of manuscripts
Prizes
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Google Scholarship for Students with Disabilities 2015
Kuosmanen, A. (Recipient), 27 May 2015
Prize: Prizes and awards
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