Genome-scale Algorithmics research group / Veli Mäkinen

  • PL 68 (Gustaf Hällströmin katu 2b), B230

    HELSINGIN YLIOPISTO

    Finland

International and National Collaboration Publications and projects within past five years.

Profiles

Projects 2010 2021

Publications 2009 2019

Applying the Positional Burrows–Wheeler Transform to All-Pairs Hamming distance

Mäkinen, V. & Norri, T., Jun 2019, In : Information Processing Letters. 146, p. 17-19 3 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

Hardness of Covering Alignment: Phase Transition in Post-Sequence Genomics

Rizzi, R., Cairo, M., Mäkinen, V., Tomescu, A. I. & Valenzuela, D., Feb 2019, In : IEEE/ACM Transactions on Computational Biology and Bioinformatics. 16, 1, p. 23-30 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

Kermit: Linkage map guided long read assembly

Walve, R., Rastas, P. & Salmela, L., 20 Mar 2019, In : Algorithms for Molecular Biology. 14, 1, 10 p., 8.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

Linear time minimum segmentation enables scalable founder reconstruction

Norri, T., Cazaux, B., Kosolobov, D. & Mäkinen, V., 17 May 2019, In : Algorithms for Molecular Biology. 14, 15 p., 12.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

Sparse Dynamic Programming on DAGs with Small Width

Mäkinen, V., Tomescu, A. I., Kuosmanen, A., Paavilainen, T., Gagie, T. & Chikhi, R., May 2019, In : ACM Transactions on Algorithms. 15, 2, 21 p., 29.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

Activities 2004 2019

Annual Symposium on Combinatorial Pattern Matching

Veli Mäkinen (Scientific Committee Member)
Feb 2019

Activity: Participating in or organising an event typesOrganisation and participation in conferences, workshops, courses, seminars

Bioinformatics (Journal)

Veli Mäkinen (Reviewer)
Jan 2019

Activity: Publication peer-review and editorial work typesPeer review of manuscripts

Theoretical Computer Science (Journal)

Veli Mäkinen (Reviewer)
May 2019

Activity: Publication peer-review and editorial work typesPeer review of manuscripts

Dagstuhl seminar on 25 Years of the Burrows-Wheeler Transform

Veli Mäkinen (Speaker: Presenter)
Jun 2019

Activity: Participating in or organising an event typesOrganisation and participation in conferences, workshops, courses, seminars

Selection Committee for HiLIFE Research Trainee Scholarship (External organisation)

Veli Mäkinen (Member)
Feb 2019

Activity: Membership typesMembership or other role in review committee

Prizes

Google Scholarship for Students with Disabilities 2015

Anna Kuosmanen (Recipient), 27 May 2015

Prize: Prizes and awards

Hyvä tutkija -palkinto 2007

Veli Mäkinen (Recipient), 19 Dec 2007

Prize: Prizes and awards

Press / Media

Interview for "IT Invalidityö" magazine

Anna Kuosmanen

29/01/2016

1 media contribution

Press/Media: Press / Media

Repeat- and Error-Aware Comparison of Deletions

Veli Mäkinen

15/05/2015

1 item of media coverage

Press/Media: Press / Media