Projects per year
International and National Collaboration
Publications and projects within past five years.
Profiles
Jarno Alanko
- Department of Computer Science Subunit - Doctoral Student
- Genome-scale Algorithmics research group / Veli Mäkinen
- Doctoral Programme in Computer Science
Person: UH, Teaching and research personnel
Veli Mäkinen
- Department of Computer Science - Professor
- Helsinki Institute for Information Technology
- Genome-scale Algorithmics research group / Veli Mäkinen
- Bioinformatics
- Doctoral Programme in Computer Science - Supervisor for doctoral programme
Person: UH, Teaching and research personnel
Tuukka Norri
- Department of Computer Science Subunit - Doctoral Student
- Genome-scale Algorithmics research group / Veli Mäkinen
Person: UH, Teaching and research personnel
Simon Puglisi
- Department of Computer Science Subunit - Associate professor
- Helsinki Institute for Information Technology
- Bioinformatics
- Genome-scale Algorithmics research group / Veli Mäkinen
- Doctoral Programme in Computer Science - Supervisor for doctoral programme
Person: UH, Teaching and research personnel
Leena Salmela
- Department of Computer Science Subunit - Academy Research Fellow
- Helsinki Institute for Information Technology
- Genome-scale Algorithmics research group / Veli Mäkinen
- Bioinformatics
- Doctoral Programme in Computer Science - Supervisor for doctoral programme
- Staff Services - Docent
Person: UH, Teaching and research personnel
Projects 2010 2021
Algoritmeja ja tietorakenteita yksilöiden genomien tutkimukseen
01/08/2010 → 31/12/2012
Project: Research project
Publications 2009 2019
Applying the Positional Burrows–Wheeler Transform to All-Pairs Hamming distance
Mäkinen, V. & Norri, T., Jun 2019, In : Information Processing Letters. 146, p. 17-19 3 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access
File
Fixed Block Compression Boosting in FM-Indexes: Theory and Practice
Gog, S., Kärkkäinen, J., Kempa, D., Petri, M. & Puglisi, S. J., Apr 2019, In : Algorithmica. 81, 4, p. 1370-1391 22 p.Research output: Contribution to journal › Article › Scientific › peer-review
Hardness of Covering Alignment: Phase Transition in Post-Sequence Genomics
Rizzi, R., Cairo, M., Mäkinen, V., Tomescu, A. I. & Valenzuela, D., Feb 2019, In : IEEE/ACM Transactions on Computational Biology and Bioinformatics. 16, 1, p. 23-30 8 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access
File
Kermit: Linkage map guided long read assembly
Walve, R., Rastas, P. & Salmela, L., 20 Mar 2019, In : Algorithms for Molecular Biology. 14, 1, 10 p., 8.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access
File
Linear time minimum segmentation enables scalable founder reconstruction
Norri, T., Cazaux, B., Kosolobov, D. & Mäkinen, V., 17 May 2019, In : Algorithms for Molecular Biology. 14, 15 p., 12.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access
File
Activities 2004 2019
Annual Symposium on Combinatorial Pattern Matching
Veli Mäkinen (Scientific Committee Member)Feb 2019
Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars
Theoretical Computer Science (Journal)
Veli Mäkinen (Reviewer)May 2019
Activity: Publication peer-review and editorial work types › Peer review of manuscripts
Bioinformatics (Journal)
Veli Mäkinen (Reviewer)Jan 2019
Activity: Publication peer-review and editorial work types › Peer review of manuscripts
Dagstuhl seminar on 25 Years of the Burrows-Wheeler Transform
Veli Mäkinen (Speaker: Presenter)Jun 2019
Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars
Selection Committee for HiLIFE Research Trainee Scholarship (External organisation)
Veli Mäkinen (Member)Feb 2019
Activity: Membership types › Membership or other role in review committee
Prizes
Google Scholarship for Students with Disabilities 2015
Anna Kuosmanen (Recipient), 27 May 2015
Prize: Prizes and awards
Press / Media
Repeat- and Error-Aware Comparison of Deletions
15/05/2015
1 item of media coverage
Press/Media: Press / Media