Projects per year
International and National Collaboration
Publications and projects within past five years.
Profiles
-
Jarno Alanko
- Department of Computer Science - Postdoctoral Researcher
- Genome-scale Algorithmics research group / Veli Mäkinen
- Algorithmic Bioinformatics
Person: U2 Teaching and research staff, UH
-
Veli Mäkinen
- Department of Computer Science - Professor, Title of Docent
- Helsinki Institute for Information Technology
- Genome-scale Algorithmics research group / Veli Mäkinen
- Algorithmic Bioinformatics
- Bioinformatics
- Doctoral Programme in Integrative Life Science - Supervisor for doctoral programme
- Doctoral Programme in Computer Science - Supervisor for doctoral programme
Person: UH, U4 Research and teaching staff
-
Tuukka Norri
- Department of Computer Science - Postdoctoral Researcher
- Genome-scale Algorithmics research group / Veli Mäkinen
- Algorithmic Bioinformatics
- Doctoral Programme in Computer Science
Person: Doctoral Researcher, U2 Teaching and research staff, UH
Projects
- 2 Finished
-
-
Algoritmeja ja tietorakenteita yksilöiden genomien tutkimukseen
01/08/2010 → 31/12/2012
Project: Research project
-
Syotti: scalable bait design for DNA enrichment
Alanko, J. N., Slizovskiy, I. B., Lokshtanov, D., Gagie, T., Noyes, N. R. & Boucher, C., 24 Jun 2022, In: Bioinformatics. 38, SUPPL 1, p. 177-184 8 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Accurate spliced alignment of long RNA sequencing reads
Sahlin, K. & Mäkinen, V., 15 Dec 2021, In: Bioinformatics. 37, 24, p. 4643-4651 9 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Algorithms and Complexity on Indexing Elastic Founder Graphs
Equi, M., Norri, T., Alanko, J., Cazaux, B., Tomescu, A. & Mäkinen, V., 30 Nov 2021, 32nd International Symposium on Algorithms and Computation (ISAAC 2021). Ahn, H-K. & Sadakane, K. (eds.). Dagstuhl, Germany: Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 18 p. (Leibniz International Proceedings in Informatics (LIPIcs); vol. 212).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review
Open AccessFile -
Buffering updates enables efficient dynamic de Bruijn graphs
Alanko, J., Alipanahi, B., Settle, J., Boucher, C. & Gagie, T., 2021, In: Computational and Structural Biotechnology Journal. 19, p. 4067-4078 12 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Distributed hybrid-indexing of compressed pan-genomes for scalable and fast sequence alignment
Maarala, A. I., Arasalo, O., Valenzuela, D., Mäkinen, V. & Heljanko, K., 3 Aug 2021, In: PLoS One. 16, 8, 19 p., 0255260.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile
Activities
-
Founder graphs and sequences for pangenomics
Veli Mäkinen (Speaker)
Feb 2022Activity: Talk or presentation types › Oral presentation
-
Alignments on pangenome representations
Veli Mäkinen (Speaker)
4 Jul 2022 → 7 Jul 2022Activity: Talk or presentation types › Oral presentation
-
33rd International Workshop on Combinatorial Algorithms
Veli Mäkinen (Scientific Committee Member)
Jan 2022 → Apr 2022Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars
-
ISMB 2022
Veli Mäkinen (Scientific Committee Member)
Feb 2022Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars
-
CPM 2022
Veli Mäkinen (Scientific Committee Member)
Feb 2022Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars
Prizes
-
Google Scholarship for Students with Disabilities 2015
Kuosmanen, Anna (Recipient), 27 May 2015
Prize: Prizes and awards
-