Genome-scale Algorithmics research group / Veli Mäkinen

  • PL 68 (Gustaf Hällströmin katu 2b), B230

    HELSINGIN YLIOPISTO

    Finland

International and National Collaboration Publications and projects within past five years.

Projects

Publications

Fast Indexes for Gapped Pattern Matching

Cáceres, M., Puglisi, S. & Zhukova, B., 17 Jan 2020, p. 493-504. 12 p.

Research output: Conference materialsPaper

Finding all maximal perfect haplotype blocks in linear time

Alanko, J., Bannai, H., Cazaux, B., Peterlongo, P. & Stoye, J., 10 Feb 2020, In : Algorithms for Molecular Biology. 15, 1, 7 p., 2.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

Regular Languages meet Prefix Sorting

Alanko, J., Prezza, N., Policriti, A. & D’Agostino, G., 2020, (Accepted/In press) Proceedings of the Thirty-First Annual ACM-SIAM Symposium on Discrete Algorithms. Society for Industrial and Applied Mathematics, 2020.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Tight Upper and Lower Bounds on Suffix Tree Breadth

Badkobeh, G., Gawrychowski, P., Kärkkäinen, J., Puglisi, S. & Zhukova, B., 23 Jan 2020, (Accepted/In press) In : Theoretical Computer Science.

Research output: Contribution to journalArticleScientificpeer-review

A framework for space-efficient variable-order Markov models

Cunial, F., Alanko, J. & Belazzougui, D., 15 Nov 2019, In : Bioinformatics. 35, 22, p. 4607-4616 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Activities

Research Foundation Flanders (External organisation)

Veli Mäkinen (Assessment)
Jun 2020

Activity: Membership typesMembership or other role in national/international committee, council, board

SPIRE 2020 (Event)

Veli Mäkinen (Programme Committee Member)
2020

Activity: Publication peer-review and editorial work typesPeer review of manuscripts

ISMB 2020 (Event)

Veli Mäkinen (Reviewer)
Feb 2020

Activity: Publication peer-review and editorial work typesPeer review of manuscripts

WABI 2020 (Event)

Veli Mäkinen (Programme Committee Member)
2020

Activity: Publication peer-review and editorial work typesPeer review of manuscripts

Algorithms (Journal)

Veli Mäkinen (Reviewer)
Apr 2020

Activity: Publication peer-review and editorial work typesPeer review of manuscripts

Prizes

Google Scholarship for Students with Disabilities 2015

Anna Kuosmanen (Recipient), 27 May 2015

Prize: Prizes and awards

Hyvä tutkija -palkinto 2007

Veli Mäkinen (Recipient), 19 Dec 2007

Prize: Prizes and awards

Press / Media

Interview for "IT Invalidityö" magazine

Anna Kuosmanen

29/01/2016

1 Media contribution

Press/Media: Press / Media

Repeat- and Error-Aware Comparison of Deletions

Veli Antti Tapani Mäkinen

15/05/2015

1 item of Media coverage

Press/Media: Press / Media