Projects per year
International and National Collaboration
Publications and projects within past five years.
Profiles
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Jarno Alanko
- Department of Computer Science - Postdoctoral Researcher
- Genome-scale Algorithmics research group / Veli Mäkinen
- Algorithmic Bioinformatics
Person: U2 Teaching and research staff, UH
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Veli Mäkinen
- Department of Computer Science - Professor, Title of Docent
- Helsinki Institute for Information Technology
- Genome-scale Algorithmics research group / Veli Mäkinen
- Algorithmic Bioinformatics
- Bioinformatics
- Doctoral Programme in Integrative Life Science - Supervisor for doctoral programme
- Doctoral Programme in Computer Science - Supervisor for doctoral programme
Person: UH , U4 Research and teaching staff
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Tuukka Norri
- ATG - Applied Tumor Genomics - Postdoctoral Researcher
- Algorithmic Bioinformatics
- Genome-scale Algorithmics research group / Veli Mäkinen
Person: U2 Teaching and research staff, UH
Projects
- 2 Finished
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Algoritmeja ja tietorakenteita yksilöiden genomien tutkimukseen
01/08/2010 → 31/12/2012
Project: Research project
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Algorithms and Complexity on Indexing Founder Graphs
Equi, M., Norri, T., Alanko, J., Cazaux, B., Tomescu, A. & Makinen, V., Jun 2023, In: Algorithmica. 85, 6, p. 1586-1623 38 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Chaining for accurate alignment of erroneous long reads to acyclic variation graphs
Ma, J., Caceres Reyes, M. A., Salmela, L., Mäkinen, V. & Tomescu, A., Aug 2023, In: Bioinformatics. 39, 8, 10 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Chaining of Maximal Exact Matches in Graphs
Rizzo, N., Caceres Reyes, M. A. & Mäkinen, V., 2023, String Processing and Information Retrieval. SPIRE 2023. Cham: Springer, p. 353–366 (Lecture Notes in Computer Science; vol. 14240).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review
Open AccessFile -
Finding Maximal Exact Matches in Graphs
Rizzo, N., Caceres Reyes, M. A. & Mäkinen, V., Aug 2023, 23rd International Workshop on Algorithms in Bioinformatics (WABI 2023). Belazzougui, D. & Ouangraoua, A. (eds.). Schloss Dagstuhl - Leibniz-Zentrum für Informatik, (Leibniz International Proceedings in Informatics (LIPIcs); vol. 273).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review
Open AccessFile -
From Bit-Parallelism to Quantum String Matching for Labelled Graphs
Equi, M., Meijer-Van de Griend, A. & Mäkinen, V., Jun 2023, 34th Annual Symposium on Combinatorial Pattern Matching, CPM 2023. Bulteau, L. & Liptak, Z. (eds.). Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, p. 9:1-9:20 9. (Leibniz International Proceedings in Informatics, LIPIcs; vol. 259).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review
Open AccessFile
Activities
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Väitöskomitean jäsen
Veli Mäkinen (Opponent)
Jul 2023Activity: Examination types › Opponent of doctoral dissertation
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Bioinformatics advances (Journal)
Veli Mäkinen (Reviewer)
Sep 2023Activity: Publication peer-review and editorial work types › Peer review of manuscripts
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Sequences workshop
Veli Mäkinen (Invited speaker)
May 2023Activity: Talk or presentation types › Invited talk
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ISMB/ECCB 2023 (Event)
Veli Mäkinen (Programme Committee Member)
Feb 2023Activity: Publication peer-review and editorial work types › Peer review of manuscripts
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Workshop on Algorithms in Bioinformatics (WABI 2023) (Event)
Veli Mäkinen (Programme Committee Member)
May 2023Activity: Publication peer-review and editorial work types › Peer review of manuscripts
Prizes
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Google Scholarship for Students with Disabilities 2015
Kuosmanen, Anna (Recipient), 27 May 2015
Prize: Prizes and awards
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