Projects per year
Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
Profiles
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Jarno Alanko
- Department of Computer Science - University Researcher
- Algorithmic Bioinformatics
- Genome-scale Algorithmics research group / Veli Mäkinen
Person: U3 Research and teaching staff, UH
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Veli Mäkinen
- Helsinki Institute for Information Technology
- Department of Computer Science - Professor, Title of Docent
- Doctoral Programme in Integrative Life Science - Supervisor for doctoral programme
- Doctoral Programme in Computer Science - Supervisor for doctoral programme
- Algorithmic Bioinformatics
- Genome-scale Algorithmics research group / Veli Mäkinen
- Bioinformatics
Person: UH , U4 Research and teaching staff
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Tuukka Norri
- ATG - Applied Tumor Genomics - Postdoctoral Researcher
- Genome-scale Algorithmics research group / Veli Mäkinen
Person: U2 Teaching and research staff, UH
Projects
- 2 Finished
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Sekvenssianalyysin uudet menetelmät ja laajennukset
Mäkinen, V. (Project manager)
01/09/2017 → 31/08/2021
Project: Research project
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Algoritmeja ja tietorakenteita yksilöiden genomien tutkimukseen
Mäkinen, V. (Project manager)
01/08/2010 → 31/12/2012
Project: Research project
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Practical Colinear Chaining on Sequences Revisited
Rizzo, N., Cáceres, M. & Mäkinen, V., 2026, Bioinformatics Research And Applications, Isbra 2025, Pt Ii. Tang, J., Lai, X., Cai, Z., Peng, W. & Wei, Y. (eds.). Springer Science and Business Media Deutschland GmbH, Vol. 15757. p. 203-216 14 p. (Lecture Notes in Computer Science; vol. 15757 LNBI).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review
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Batched k-mer lookup on the Spectral Burrows-Wheeler Transform
Alanko, J., Biagi, E., Mackenzie, J. & Puglisi, S., 7 Jan 2025, 2025 Proceedings of the Symposium on Algorithm Engineering and Experiments (ALENEX). Chowdhury, R., Berry, J., Hanauer, K. & Ren, B. (eds.). Society for Industrial and Applied Mathematics, p. 95 - 106 12 p. ( Proceedings of the Workshop on Algorithm Engineering and Experiments).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review
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Compact Data Structures for Collections of Sets
Alanko, J. N., Bille, P., Gørtz, I. L., Navarro, G. & Puglisi, S. J., 11 Aug 2025, From Strings to Graphs, and Back Again: A Festschrift for Roberto Grossi's 60th Birthday. Conte, A., Conte, A., Marino, A., Rosone, G., Vitter, J. S. & Vitter, J. S. (eds.). Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, 6. (OpenAccess Series in Informatics; vol. 132).Research output: Chapter in Book/Report/Conference proceeding › Chapter › Scientific › peer-review
Open AccessFile -
Exploiting uniqueness: seed-chain-extend alignment on elastic founder graphs
Rizzo, N., Caceres Reyes, M. A. & Mäkinen, V., 15 Jul 2025, In: Bioinformatics. 41, p. i265-i274 10 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Finimizers: Variable-Length Bounded-Frequency Minimizers for k-mer Sets
Alanko, J. N., Biagi, E. & Puglisi, S. J., 2025, In: IEEE/ACM Transactions on Computational Biology and Bioinformatics. 22, 2, p. 899-910 12 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile
Activities
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Genome Research (Journal)
Mäkinen, V. (Reviewer)
Apr 2025Activity: Publication peer-review and editorial work types › Peer review of manuscripts
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ISMB/ECCB 2025 (Event)
Mäkinen, V. (Programme Committee Member)
Feb 2025Activity: Publication peer-review and editorial work types › Peer review of manuscripts
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Algorithms (Journal)
Mäkinen, V. (Reviewer)
Oct 2024Activity: Publication peer-review and editorial work types › Peer review of manuscripts
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CPM 2025 (Event)
Mäkinen, V. (Programme Committee Chair)
Jul 2024 → Jun 2025Activity: Publication peer-review and editorial work types › Peer review of manuscripts
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Elements of Pangenomic Data Science
Mäkinen, V. (Invited speaker)
Aug 2024Activity: Talk or presentation types › Invited talk
Prizes
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Best Paper Award
Schmidt, S. S. (Recipient) & Alanko, J. (Recipient), 9 Sept 2022
Prize: Prizes and awards
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Google Scholarship for Students with Disabilities 2015
Kuosmanen, A. (Recipient), 27 May 2015
Prize: Prizes and awards
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