Integrative Evolutionary Biology

Publications

Research output per year 2009 2015 2019 2020 2021 2022 2023 2024 2024

• 34 Article
• 9 Review Article
• 2 Chapter
• 2 Editorial

Research output per year

Research output per year

Search results

• 2024

  Demography and environment modulate the effects of genetic diversity on extinction risk in a butterfly metapopulation

  DiLeo, M. F., Nair, A., Kardos, M., Husby, A. & Saastamoinen, M., 13 Aug 2024, In: Proceedings of the National Academy of Sciences of the United States of America. 121, 33, 12 p., e2309455121.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File

• Ecological drivers of ultraviolet colour evolution in snakes

  Crowell, H. L., Curlis, J. D., Weller, H. I. & Davis Rabosky, A. R., Dec 2024, In: Nature Communications. 15, 1, 5213.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File

• recolorize: An R package for flexible colour segmentation of biological images

  Weller, H. I., Hiller, A. E., Lord, N. P. & Van Belleghem, S. M., Feb 2024, In: Ecology Letters. 27, 2, 14 p., e14378.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File

• The rostral micro-tooth morphology of blue marlin, Makaira nigricans

  Pacher, K., Breuker, M., Hansen, M. J., Kurvers, R. H. J. M., Häge, J., Dhellemmes, F., Domenici, P., Steffensen, J. F., Krause, S., Hildebrandt, T., Fritsch, G., Bach, P., Sabarros, P. S., Zaslansky, P., Mahlow, K., Müller, J., Armas, R. G., Ortiz, H. V., Galván-Magaña, F. & Krause, J., Mar 2024, In: Journal of Fish Biology. 104, 3, p. 713-722 10 p.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File

• Turtle Girdles: Comparing the Relationships Between Environment and Behavior on Forelimb Function in Loggerhead Sea Turtles (Caretta caretta) and River Cooters (Pseudemys concinna)

  Mayerl, C. J., Capano, J. G., Mme, N. V. M., Weller, H. I., Kaczmarek, E. B., Chadam, M., Blob, R. W., Brainerd, E. L. & Wyneken, J., Dec 2024, In: Journal of Morphology. 285, 12, 12 p., e70007.

  Research output: Contribution to journal › Article › Scientific › peer-review
• 2023

  Analysis of population structure and genetic diversity in low-variance Saimaa ringed seals using low-coverage whole-genome sequence data

  Olkkonen, E. & Löytynoja, A., 15 Dec 2023, In: STAR protocols. 4, 4, 37 p., 102567.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File

• Building and Managing a Tropical Fish Facility: A Do-It-Yourself Guide

  Kratochwil, C. F., Kuwalekar, M., Häge, J. & Karagic, N., 1 Sept 2023, In: arXiv.org . 14 p.

  Research output: Contribution to journal › Article › Scientific

  Open Access

  File

• East African cichlid fishes

  Santos, M. E., Lopes, J. F. & Kratochwil, C., 5 Jan 2023, In: EvoDevo. 14, 21 p., 1.

  Research output: Contribution to journal › Review Article › peer-review

  Open Access

  File

• Genome editing in East African cichlids and tilapias: state-of-the-art and future directions

  Clark, B., Kuwalekar, M., Fischer, B., Woltering, J., Biran, J., Juntti, S., Kratochwil, C. F., Santos, M. E. & Almeida, M. V., 29 Nov 2023, In: Open biology. 13, 11, 18 p.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File

• How genomics can help biodiversity conservation

  Theissinger, K., Fernandes, C., Formenti, G., Bista, I., Berg, P. R., Bleidorn, C., Bombarely, A., Crottini, A., Gallo, G. R., Godoy, J. A., Jentoft, S., Malukiewicz, J., Mouton, A., Oomen, R. A., Paez, S., Palsbøll, P. J., Pampoulie, C., Ruiz-López, M. J., Secomandi, S. & Svardal, H. & 12 others, Theofanopoulou, C., de Vries, J., Waldvogel, A.-M., Zhang, G., Jarvis, E. D., Bálint, M., Kratochwil, C., Primmer, C., Ciofi, C., Waterhouse, R. M., Mazzoni, C. J. & Höglund, J., Jul 2023, In: Trends in Genetics. 39, 7, p. 545-559 15 p.

  Research output: Contribution to journal › Review Article › peer-review

  Open Access

  File

• Mechanisms Underlying the Formation and Evolution of Vertebrate Color Patterns: Annual Review of Genetics

  Kratochwil, C. F. & Mallarino, R., Nov 2023, In: Annual Review of Genetics. 57, 1, p. 135-156 22 p.

  Research output: Contribution to journal › Review Article › peer-review

  Open Access

  File

• Toward a universal measure of robustness across model organs and systems

  Jernvall, J., Di-Poï, N., Mikkola, M. L. & Kratochwil, C. F., 25 Nov 2023, In: Evolution & Development. 25, 6, p. 410-417 8 p.

  Research output: Contribution to journal › Review Article › peer-review

  Open Access

  File
• 2022

  An intronic transposon insertion associates with a trans-species color polymorphism in Midas cichlid fishes

  Kratochwil, C., Kautt, A. F., Nater, A., Härer, A., Liang, Y., Henning, F. & Meyer, A., 13 Jan 2022, In: Nature Communications. 13, 1, 8 p., 296.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File

• Comparative ontogenetic and transcriptomic analyses shed light on color pattern divergence in cichlid fishes

  Kratochwil, C. F., Liang, Y., Gerwin, J., Franchini, P. & Meyer, A., Sept 2022, In: Evolution and Development. 24, 5, p. 158-170 13 p.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File

• The era of reference genomes in conservation genomics

  European Reference Genome Atlas (ERGA) Consortium, Formenti, G., Kratochwil, C. F. & Primmer, C. R., Mar 2022, In: Trends in Ecology & Evolution. 37, 3, p. 197-202 6 p.

  Research output: Contribution to journal › Review Article › peer-review

  Open Access

  File

• The repeated evolution of stripe patterns is correlated with body morphology in the adaptive radiations of East African cichlid fishes

  Urban, S., Gerwin, J., Hulsey, C. D., Meyer, A. & Kratochwil, C. F., Feb 2022, In: Ecology and Evolution. 12, 2, 11 p., e8568.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File
• 2021

  Afrikkalaisten kirjoahventen värityksen evoluutio

  Translated title of the contribution: The evolution of coloration in African cichlid fishesKratochwil, C., Dec 2021, In: Ciklidisti : Suomen kirjoahvenharrastajien jäsenlehti. 3, p. 18-19 2 p.

  Research output: Contribution to journal › Article › General public

  Open Access

  File

• Different Sources of Allelic Variation Drove Repeated Color Pattern Divergence in Cichlid Fishes

  Urban, S., Nater, A., Meyer, A. & Kratochwil, C. F., Feb 2021, In: Molecular Biology and Evolution. 38, 2, p. 465-477 13 p.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File

• Functional conservation and divergence of color-pattern-related agouti family genes in teleost fishes

  Liang, Y., Grauvogl, M., Meyer, A. & Kratochwil, C. F., Jul 2021, In: Journal of Experimental Zoology. Part B: Molecular and Developmental Evolution. 336, 5, p. 443-450 8 p.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File

• Of bars and stripes: A Malawi cichlid hybrid cross provides insights into genetic modularity and evolution of modifier loci underlying colour pattern diversification

  Gerwin, J., Urban, S., Meyer, A. & Kratochwil, C. F., Oct 2021, In: Molecular Ecology. 30, 19, p. 4789-4803 15 p.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File
• 2020

  Contrasting signatures of genomic divergence during sympatric speciation

  Kautt, A. F., Kratochwil, C. F., Nater, A., Machado-Schiaffino, G., Olave, M., Henning, F., Torres-Dowdall, J., Härer, A., Hulsey, C. D., Franchini, P., Pippel, M., Myers, E. W. & Meyer, A., 3 Dec 2020, In: Nature. 588, 7836, p. 106-111 34 p.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File

• Developmental and Cellular Basis of Vertical Bar Color Patterns in the East African Cichlid Fish Haplochromis latifasciatus

  Liang, Y., Gerwin, J., Meyer, A. & Kratochwil, C. F., 11 Feb 2020, In: Frontiers in Cell and Developmental Biology. 8, 15 p., 62.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File

• Hierarchically embedded interaction networks represent a missing link in the study of behavioral and community ecology

  Montiglio, P. O., Gotanda, K. M., Kratochwil, C. F., Laskowski, K. L. & Farine, D. R., Mar 2020, In: Behavioral Ecology. 31, 2, p. 279-286 8 p.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File

• Neural innervation as a potential trigger of morphological color change and sexual dimorphism in cichlid fish

  Liang, Y., Meyer, A. & Kratochwil, C. F., 23 Jul 2020, In: Scientific Reports. 10, 1, 16 p., 12329.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File

• Postmitotic Hoxa5 Expression Specifies Pontine Neuron Positional Identity and Input Connectivity of Cortical Afferent Subsets

  Maheshwari, U., Kraus, D., Vilain, N., Holwerda, S. J. B., Cankovic, V., Maiorano, N. A., Kohler, H., Satoh, D., Sigrist, M., Arber, S., Kratochwil, C. F., Di Meglio, T., Ducret, S. & Rijli, F. M., 16 Jun 2020, In: Cell Reports. 31, 11, 25 p., 107767.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File

• The Cre/Lox System to Assess the Development of the Mouse Brain

  Kratochwil, C. F. & Rijli, F. M., 2020, Brain Development: Methods and Protocols. Sprecher, S. (ed.). New York, NY: Humana press, p. 491-512 22 p. (Methods in Molecular Biology; vol. 2047).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Scientific
• 2019

  Evolutionary Dynamics of Structural Variation at a Key Locus for Color Pattern Diversification in Cichlid Fishes

  Kratochwil, C. F., Liang, Y., Urban, S., Torres-Dowdall, J. & Meyer, A., Dec 2019, In: Genome Biology and Evolution. 11, 12, p. 3452-3465 14 p.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File

• Fragile DNA contributes to repeated evolution

  Kratochwil, C. F. & Meyer, A., 21 Feb 2019, In: Genome Biology. 20, 4 p., 39.

  Research output: Contribution to journal › Editorial › Scientific

  Open Access

  File

• Genome of the Malawi golden cichlid fish (Melanochromis auratus) reveals exon loss of oca2 in an amelanistic morph

  Kratochwil, C. F., Urban, S. & Meyer, A., Sept 2019, In: Pigment Cell & Melanoma Research. 32, 5, p. 719-723 5 p.

  Research output: Contribution to journal › Article › Scientific › peer-review

• Molecular mechanisms of convergent color pattern evolution

  Kratochwil, C. F., Jun 2019, In: Zoology. 134, p. 66-68 3 p.

  Research output: Contribution to journal › Review Article
• 2018

  Agouti-related peptide 2 facilitates convergent evolution of stripe patterns across cichlid fish radiations

  Kratochwil, C. F., Liang, Y., Gerwin, J., Woltering, J. M., Urban, S., Henning, F., Machado-Schiaffino, G., Hulsey, C. D. & Meyer, A., 26 Oct 2018, In: Science. 362, 6413, p. 457-+ 4 p.

  Research output: Contribution to journal › Article › Scientific › peer-review

• Early developmental and allometric patterns in the electric yellow cichlid Labidochromis caeruleus

  Saemi-Komsari, M., Mousavi-Sabet, H., Kratochwil, C. F., Sattari, M., Eagderi, S. & Meyer, A., Jun 2018, In: Journal of Fish Biology. 92, 6, p. 1888-1901 14 p.

  Research output: Contribution to journal › Article › Scientific › peer-review

• Mimicry in butterflies: co-option and a bag of magnificent developmental genetic tricks

  Deshmukh, R., Baral, S., Gandhimathi, A., Kuwalekar, M. & Kunte, K., 1 Jan 2018, In: Wiley Interdisciplinary Reviews: Developmental Biology. 7, 1, e291.

  Research output: Contribution to journal › Review Article › peer-review
• 2017

  A mutant with bilateral whisker to barrel inputs unveils somatosensory mapping rules in the cerebral cortex

  Renier, N., Dominici, C., Erzurumlu, R. S., Kratochwil, C. F., Rijli, F. M., Gaspar, P. & Chedotal, A., 28 Mar 2017, In: eLife. 6, 19 p., 23494.

  Research output: Contribution to journal › Article › Scientific › peer-review

• The Long Journey of Pontine Nuclei Neurons: From Rhombic Lip to Cortico-Ponto-Cerebellar Circuitry

  Kratochwil, C. F., Maheshwari, U. & Rijli, F. M., 17 May 2017, In: Frontiers in neural circuits. 11, 19 p., 33.

  Research output: Contribution to journal › Review Article › peer-review

• Tol2 transposon-mediated transgenesis in the Midas cichlid (Amphilophus citrinellus) - towards understanding gene function and regulatory evolution in an ecological model system for rapid phenotypic diversification

  Kratochwil, C. F., Sefton, M. M., Liang, Y. & Meyer, A., 23 Nov 2017, In: BMC Developmental Biology. 17, 11 p., 15.

  Research output: Contribution to journal › Article › Scientific › peer-review
• 2015

  Closing the genotype-phenotype gap: Emerging technologies for evolutionary genetics in ecological model vertebrate systems

  Kratochwil, C. F. & Meyer, A., Feb 2015, In: BioEssays. 37, 2, p. 213-226 14 p.

  Research output: Contribution to journal › Review Article › peer-review

• Embryonic and larval development in the Midas cichlid fish species flock (Amphilophus spp.): a new evo-devo model for the investigation of adaptive novelties and species differences

  Kratochwil, C. F., Sefton, M. M. & Meyer, A., 26 Feb 2015, In: BMC Developmental Biology. 15, 15 p., 12.

  Research output: Contribution to journal › Article › Scientific › peer-review

• Evolution: Tinkering within Gene Regulatory Landscapes

  Kratochwil, C. F. & Meyer, A., 30 Mar 2015, In: Current Biology. 25, 7, p. R285-R288 5 p.

  Research output: Contribution to journal › Editorial › Scientific

• Hoxa2 Selects Barrelette Neuron Identity and Connectivity in the Mouse Somatosensory Brainstem

  Bechara, A., Laumonnerie, C., Vilain, N., Kratochwil, C. F., Cankovic, V., Maiorano, N. A., Kirschmann, M. A., Ducret, S. & Rijli, F. M., 27 Oct 2015, In: Cell Reports. 13, 4, p. 783-797 15 p.

  Research output: Contribution to journal › Article › Scientific › peer-review

• Mapping active promoters by ChIP-seq profiling of H3K4me3 in cichlid fish - a first step to uncover cis-regulatory elements in ecological model teleosts

  Kratochwil, C. F. & Meyer, A., Jul 2015, In: Molecular Ecology Resources. 15, 4, p. 761-771 11 p.

  Research output: Contribution to journal › Article › Scientific › peer-review

• Molecular Evolution of the Neural Crest Regulatory Network in Ray-Finned Fish

  Kratochwil, C. F., Geissler, L., Irisarri, I. & Meyer, A., Nov 2015, In: Genome Biology and Evolution. 7, 11, p. 3033-3046 14 p.

  Research output: Contribution to journal › Article › Scientific › peer-review
• 2014

  The Cre/Lox System to Assess the Development of the Mouse Brain

  Kratochwil, C. F. & Rijli, F. M., 2014, Brain Development: Methods and Protocols: Methods in Molecular Biology. Sprecher, S. (ed.). Totowa, NJ: Humana press, Vol. 1082. p. 295-313 19 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Scientific

• 2013

  Ezh2 Orchestrates Topographic Migration and Connectivity of Mouse Precerebellar Neurons

  Di Meglio, T., Kratochwil, C. F., Vilain, N., Loche, A., Vitobello, A., Yonehara, K., Hrycaj, S. M., Roska, B., Peters, A. H. F. M., Eichmann, A., Wellik, D., Ducret, S. & Rijli, F. M., 11 Jan 2013, In: Science. 339, 6116, p. 204-207 4 p.

  Research output: Contribution to journal › Article › Scientific › peer-review

• Mouse Hoxa2 mutations provide a model for microtia and auricle duplication

  Minoux, M., Kratochwil, C. F., Ducret, S., Amin, S., Kitazawa, T., Kurihara, H., Bobola, N., Vilain, N. & Rijli, F. M., 1 Nov 2013, In: Development. 140, 21, p. 4386-4397 12 p.

  Research output: Contribution to journal › Article › Scientific › peer-review
• 2010

  Genetic Dissection of Dopaminergic and Noradrenergic Contributions to Catecholaminergic Tracts in Early Larval Zebrafish

  Kastenhuber, E., Kratochwil, C. F., Ryu, S., Schweitzer, J. & Driever, W., 15 Feb 2010, In: Journal of Comparative Neurology. 518, 4, p. 439-458 20 p.

  Research output: Contribution to journal › Article › Scientific › peer-review
• 2009

  Aberrant differentiation of glutamatergic cells in neocortex of mouse model for fragile X syndrome

  Tervonen, T. A., Louhivuori, V., Sun, X., Hokkanen, M.-E., Kratochwil, C. F., Zebryk, P., Castren, E. & Castren, M., 2009, In: Neurobiology of Disease. 33, 2, p. 250-259 10 p.

  Research output: Contribution to journal › Article › Scientific › peer-review