Publications 1996 2019

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2019

A Deep Learning Parameterization for Ozone Dry Deposition Velocities

Silva, S. J., Heald, C. L., Ravela, S., Mammarella, I. & Munger, J. W., 28 Jan 2019, In : Geophysical Research Letters. 46, 2, p. 983-989 7 p.

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Applicability and consequences of the integration of alternative models for CO2 transfer velocity into a process-based lake model

Kiuru, P., Ojala, A., Mammarella, I., Heiskanen, J., Erkkila, K-M., Miettinen, H., Vesala, T. & Huttula, T., 4 Sep 2019, In : Biogeosciences. 16, 17, p. 3297-3317 21 p.

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Covariations between plant functional traits emerge from constraining parameterization of a terrestrial biosphere model

Peaucelle, M., Bacour, C., Ciais, P., Vuichard, N., Kuppel, S., Penuelas, J., Marchesini, L. B., Blanken, P. D., Buchmann, N., Chen, J., Delpierre, N., Desai, A. R., Dufrene, E., Gianelle, D., Gimeno-Colera, C., Gruening, C., Helfter, C., Hortnagl, L., Ibrom, A., Joffre, R. & 16 othersKato, T., Kolb, T. E., Law, B., Lindroth, A., Mammarella, I., Merbold, L., Minerbi, S., Montagnani, L., Sigut, L., Sutton, M., Varlagin, A., Vesala, T., Wohlfahrt, G., Wolf, S., Yakir, D. & Viovy, N., Sep 2019, In : Global Ecology and Biogeography. 28, 9, p. 1351-1365 15 p.

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Diurnal and Seasonal Solar Induced Chlorophyll Fluorescence and Photosynthesis in a Boreal Scots Pine Canopy

Nichol, C. J., Drolet, G., Porcar-Castell, A., Wade, T., Sabater, N., Middleton, E. M., MacLellan, C., Levula, J., Mammarella, I., Vesala, T. & Atherton, J., 1 Feb 2019, In : Remote Sensing. 11, 3, 22 p., 273.

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Do all chlorophyll fluorescence emission wavelengths capture the spring recovery of photosynthesis in boreal evergreen foliage?

Zhang, C., Atherton, J., Penuelas, J., Filella, I., Kolari, P., Aalto, J., Ruhanen, H., Back, J. & Porcar-Castell, A., 16 Aug 2019, In : Plant, Cell and Environment. 16 p.

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Influences of light and humidity on carbonyl sulfide-based estimates of photosynthesis

Kooijmans, L. M. J., Sun, W., Aalto, J., Erkkilä, K-M., Maseyk, K., Seibt, U., Vesala, T., Mammarella, I. & Chen, H., 12 Feb 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 7, p. 2470-2475 6 p.

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Monthly gridded data product of northern wetland methane emissions based on upscaling eddy covariance observations

Peltola, O., Vesala, T., Gao, Y., Raty, O., Alekseychik, P., Aurela, M., Chojnicki, B., Desai, A. R., Dolman, A. J., Euskirchen, E. S., Friborg, T., Goeckede, M., Helbig, M., Humphreys, E., Jackson, R. B., Jocher, G., Joos, F., Klatt, J., Knox, S. H., Kowalska, N. & 18 othersKutzbach, L., Lienert, S., Lohila, A., Mammarella, I., Nadeau, D. F., Nilsson, M. B., Oechel, W. C., Peichl, M., Pypker, T., Quinton, W., Rinne, J., Sachs, T., Samson, M., Schmid, H. P., Sonnentag, O., Wille, C., Zona, D. & Aalto, T., 22 Aug 2019, In : Earth system science data. 11, 3, p. 1263-1289 27 p.

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Multi-year methane ebullition measurements from water and bare peat surfaces of a patterned boreal bog

Mannisto, E., Korrensalo, A., Alekseychik, P., Mammarella, I., Peltola, O., Vesala, T. & Tuittila, E-S., 14 Jun 2019, In : Biogeosciences. 16, 11, p. 2409-2421 13 p.

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Spatial Modeling of Local-Scale Biogenic and Anthropogenic Carbon Dioxide Emissions in Helsinki

Jarvi, L., Havu, M., Ward, H. C., Bellucco, V., McFadden, J. P., Toivonen, T., Heikinheimo, V., Kolari, P., Riikonen, A. & Grimmond, C. S. B., 16 Aug 2019, In : Journal of Geophysical Research : Atmospheres. 124, 15, p. 8363-8384 22 p.

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Varying Vegetation Composition, Respiration and Photosynthesis Decrease Temporal Variability of the CO2 Sink in a Boreal Bog

Korrensalo, A., Mehtätalo, L., Alekseychik, P., Uljas, S., Mammarella, I., Vesala, T. & Tuittila, E-S., 16 Sep 2019, In : Ecosystems.

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2018

Belowground hydraulic conductance in a mature boreal Scots pine tree

Lintunen, A., Paljakka, T., Salmon, Y. & Hölttä, T., 2018, In : Acta Horticulturae. 2018, 1222, p. 103-108 6 p.

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Boreal bog plant communities along a water table gradient differ in their standing biomass but not their biomass production

Korrensalo, A., Kettunen, L., Laiho, R., Alekseychik, P., Vesala, T., Mammarella, I. & Tuittila, E-S., Mar 2018, In : Journal of Vegetation Science. 29, 2, p. 136-146 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Calibrating the sqHIMMELI v1.0 wetland methane emission model with hierarchical modeling and adaptive MCMC

Susiluoto, J., Raivonen, M., Backman, L., Laine, M., Makela, J., Peltola, O., Vesala, T. & Aalto, T., 29 Mar 2018, In : Geoscientific Model Development. 11, 3, p. 1199-1228 30 p.

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Direct effect of aerosols on solar radiation and gross primary production in boreal and hemiboreal forests

Ezhova, E., Ylivinkka, I., Kuusk, J., Komsaare, K., Vana, M., Krasnova, A., Noe, S., Arshinov, M., Belan, B., Park, S-B., Lavric, J. V., Heimann, M., Petäjä, T., Vesala, T., Mammarella, I., Kolari, P., Bäck, J., Rannik, U., Kerminen, V-M. & Kulmala, M., 17 Dec 2018, In : Atmospheric Chemistry and Physics. 18, 24, p. 17863-17881 19 p.

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Drivers of apoplastic freezing in gymnosperm and angiosperm branches

Lintunen, A. M., Mayr, S., Salmon, Y. L. B., Cochard, H. & Hölttä, T. S., Jan 2018, In : Ecology and Evolution. 8, 1, p. 333–343 11 p.

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Eddy covariance raw data processing for CO2 and energy fluxes calculation at ICOS ecosystem stations

Sabbatini, S., Mammarella, I., Arriga, N., Fratini, G., Graf, A., Hoertriagl, L., Ibrom, A., Longdoz, B., Mauder, M., Merbold, L., Metzger, S., Montagnani, L., Pitacco, A., Rebmann, C., Sedlak, P., Sigut, L., Vitale, D. & Papale, D., Dec 2018, In : International Agrophysics. 32, 4, p. 495-515 24 p.

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Effects of Climate Change on CO2 Concentration and Efflux in a Humic Boreal Lake: A Modeling Study

Kiuru, P., Ojala, A., Mammarella, I., Heiskanen, J., Kämäräinen, M., Vesala, T. & Huttula, T., Jul 2018, In : Journal of Geophysical Research : Biogeosciences. 123, 7, p. 2212-2233 22 p.

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Effects of similar weather patterns on the thermal stratification, mixing regimes and hypolimnetic oxygen depletion in two boreal lakes with different water transparency

Mammarella, I., Gavrylenko, G., Zdorovennova, G., Ojala, A., Erkkilä, K-M., Zdorovennov, R., Stepanyuk, O., Palshin, N., Terzhevik, A., Vesala, T. & Heiskanen, J., Aug 2018, In : Boreal Environment Research. 23, p. 237-247 11 p.

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Ejective and Sweeping Motions Above a Peatland and Their Role in Relaxed-Eddy-Accumulation Measurements and Turbulent Transport Modelling

Katul, G., Peltola, O., Grönholm, T., Launiainen, S., Mammarella, I. & Vesala, T., Nov 2018, In : Boundary-Layer Meteorology. 169, 2, p. 163-184 22 p.

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Energy cascade and intermittency in helically decomposed Navier-Stokes equations

Sahoo, G. & Biferale, L., Feb 2018, In : Fluid Dynamics Research. 50, 1, 13 p., 011420.

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High-frequency productivity estimates for a lake from free-water CO2 concentration measurements

Provenzale, M., Ojala, A., Heiskanen, J., Erkkila, K-M., Mammarella, I., Hari, P. & Vesala, T., 9 Apr 2018, In : Biogeosciences. 15, 7, p. 2021-2032 12 p.

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Lake-Atmosphere Heat Flux Dynamics of a Thermokarst Lake in Arctic Siberia

Franz, D., Mammarella, I., Boike, J., Kirillin, G., Vesala, T., Bornemann, N., Larmanou, E., Langer, M. & Sachs, T., 27 May 2018, In : Journal of Geophysical Research : Atmospheres. 123, 10, p. 5222-5239 18 p.

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Limitations and Challenges of MODIS-Derived Phenological Metrics Across Different Landscapes in Pan-Arctic Regions

Wang, S., Lu, X., Cheng, X., Li, X., Peichl, M. & Mammarella, I., Nov 2018, In : Remote Sensing. 10, 11, 21 p., 1784.

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Linking stem growth respiration to the seasonal course of stem growth and GPP of Scots pine

Chan, T., Berninger, F., Kolari, P., Nikinmaa, E. & Hölttä, T., Sep 2018, In : Tree Physiology. 38, 9, p. 1356-1370 15 p.

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Manipulative experiments demonstrate how long-term soil moisture changes alter controls of plant water use

Grossiord, C., Sevanto, S., Limousin, J-M., Meir, P., Mencuccini, M., Pangle, R. E., Pockman, W. T., Salmon, Y., Zweifel, R. & McDowell, N. G., Aug 2018, In : Environmental and Experimental Botany. 152, p. 19-27 9 p.

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Methane and carbon dioxide fluxes over a lake: comparison between eddy covariance, floating chambers and boundary layer method

Erkkilä, K-M., Ojala, A., Bastviken, D., Biermann, T., Heiskanen, J. J., Lindroth, A., Peltola, O., Rantakari, M., Vesala, T. & Mammarella, I., 19 Jan 2018, In : Biogeosciences. 15, 2, p. 429-445 17 p.

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Methane Fluxes Into Atmosphere from Fennoskandian Lakes

Golubyatnikov, L. L. & Mammarella, I., Nov 2018, In : Izvestiya. Atmospheric and oceanic physics. 54, 6, p. 570-580 11 p.

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Networked web-cameras monitor congruent seasonal development of birches with phenological field observations

Peltoniemi, M., Aurela, M., Böttcher, K., Kolari, P., Loehr, J., Hokkanen, T., Karhu, J., Linkosalmi, M., Tanis, C. M., Metsamaki, S., Tuovinen, J-P., Vesala, T. & Arslan, A. N., 15 Feb 2018, In : Agricultural and Forest Meteorology. 249, 15, p. 335-347 13 p.

Research output: Contribution to journalArticleScientificpeer-review

New insights into the covariation of stomatal, mesophyll and hydraulic conductances from optimization models incorporating nonstomatal limitations to photosynthesis

Dewar, R., Mauranen, A., Makela, A., Holtta, T., Medlyn, B. & Vesala, T., Jan 2018, In : New Phytologist. 217, 2, p. 571-585 15 p.

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On the Applicability of Similarity Theory for the Stable Atmospheric Boundary Layer over Complex Terrain

Barskov, K. V., Glazunov, A. V., Repina, I. A., Stepanenko, V. M., Lykossov, V. N. & Mammarella, I., Sep 2018, In : Izvestiya. Atmospheric and oceanic physics. 54, 5, p. 462-471 10 p.

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ORCHIDEE-PEAT (revision 4596), a model for northern peatland CO2, water, and energy fluxes on daily to annual scales

Qiu, C., Zhu, D., Ciais, P., Guenet, B., Krinner, G., Peng, S., Aurela, M., Bernhofer, C., Bruemmer, C., Bret-Harte, S., Chu, H., Chen, J., Desai, A. R., Dusek, J., Euskirchen, E. S., Fortuniak, K., Flanagan, L. B., Friborg, T., Grygoruk, M., Gogo, S. & 34 othersGruenwald, T., Hansen, B. U., Holl, D., Humphreys, E., Hurkuck, M., Kiely, G., Klatt, J., Kutzbach, L., Largeron, C., Laggoun-Defarge, F., Lund, M., Lafleur, P. M., Li, X., Mammarella, I., Merbold, L., Nilsson, M. B., Olejnik, J., Ottosson-Lofvenius, M., Oechel, W., Parmentier, F-J. W., Peichl, M., Pirk, N., Peltola, O., Pawlak, W., Rasse, D., Rinne, J., Shaver, G., Schmid, H. P., Sottocornola, M., Steinbrecher, R., Sachs, T., Urbaniak, M., Zona, D. & Ziemblinska, K., 5 Feb 2018, In : Geoscientific Model Development. 11, 2, p. 497-519 23 p.

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Pan-Eurasian Experiment (PEEX) Program: An Overview of the First 5 Years in Operation and Future Prospects

Lappalainen, H. K., Altimir, N., Kerminen, V-M., Petäjä, T., Makkonen, R., Alekseychik, P., Zaitseva, N., Bashmakova, I., Kujansuu, J., Lauri, A., Haapanala, P., Mazon, S. B., Borisova, A., Konstantinov, P., Chalov, S., Laurila, T., Asmi, E., Lihavainen, H., Bäck, J., Arshinov, M. & 20 othersMahura, A., Arnold, S., Vihma, T., Uotila, P., de Leeuw, G., Kukkonen, I., Malkhazova, S., Tynkkynen, V-P., Fedorova, I., Hansson, H-C., Dobrolyubov, S., Melnikov, V., Matvienko, G., Baklanov, A., Viisanen, Y., Kasimov, N., Guo, H., Bondur, V., Zilitinkevich, S. & Kulmala, M., Apr 2018, In : Geography, Environment and Sustainability. 11, 1, p. 6-19 14 p.

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Prediction of photosynthesis in Scots pine ecosystems across Europe by a needle-level theory

Hari, P., Noe, S., Dengel, S., Elbers, J., Gielen, B., Kerminen, V-M., Kruijt, B., Kulmala, L., Lindroth, A., Mammarella, I., Petaja, T., Schurgers, G., Vanhatalo, A., Kulmala, M. & Back, J., 18 Sep 2018, In : Atmospheric Chemistry and Physics. 18, 18, p. 13321-13328 8 p.

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Proxy Indicators for Mapping the End of the Vegetation Active Period in Boreal Forests Inferred from Satellite-Observed Soil Freeze and ERA-Interim Reanalysis Air Temperature

Böttcher, K., Rautiainen, K., Aurela, M., Kolari, P., Mäkelä, A., Arslan, A. N., Black, T. A. & Koponen, S., Oct 2018, In : Journal of photogrammetry, remote sensing and geoinformation science. 86, 3-4, p. 169-185 17 p.

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Radiation measurements at ICOS ecosystem stations

Carrara, A., Kolari, P., de Beeck, M. O., Arriga, N., Berveiller, D., Dengel, S., Ibrom, A., Merbold, L., Rebmann, C., Sabbatini, S., Serrano-Ortiz, P. & Biraud, S. C., Dec 2018, In : International Agrophysics. 32, 4, p. 589-605 21 p.

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Research frontiers for improving our understanding of drought-induced tree and forest mortality

Hartmann, H., Moura, C. F., Anderegg, W. R. L., Ruehr, N. K., Salmon, Y., Allen, C. D., Arndt, S. K., Breshears, D. D., Davi, H., Galbraith, D., Ruthrof, K. X., Wunder, J., Adams, H. D., Bloemen, J., Cailleret, M., Cobb, R., Gessler, A., Grams, T. E. E., Jansen, S., Kautz, M. & 2 othersLloret, F. & O'Brien, M., Apr 2018, In : New Phytologist. 218, 1, p. 15-28 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Retrieval of daily gross primary production over Europe and Africa from an ensemble of SEVIRI/MSG products

Martinez, B., Sanchez-Ruiz, S., Gilabert, M. A., Moreno, A., Campos-Taberner, M., Garcia-Haro, F. J., Trigo, I. F., Aurela, M., Bruemmer, C., Carrara, A., De Ligne, A., Gianelle, D., Grunwald, T., Limousin, J. M., Lohila, A., Mammarella, I., Sottocornola, M., Steinbrecher, R. & Tagesson, T., Mar 2018, In : International Journal of Applied Earth Observation and Geoinformation. 65, p. 124-136 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Seasonal and Diurnal Variations in Atmospheric and Soil Air 14CO2 in a Boreal Scots Pine Forest

Palonen, V., Pumpanen, J., Kulmala, L-M., Levin, I., Heinonsalo, J. & Vesala, T., Feb 2018, In : Radiocarbon. 60, 1, p. 283-297 15 p.

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Silver birch ability to refill fullyembolised xylem conduits under tension

Salmon, Y. L. B., Lintunen, A. M., Lindfors, L. O., Suhonen, H., Sevanto, S., Vesala, T. V. & Hölttä, T. S., 2018, In : Acta Horticulturae. 1222, p. 67-74 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Small spatial variability in methane emission measured from a wet patterned boreal bog

Korrensalo, A., Mannisto, E., Alekseychik, P., Mammarella, I., Rinne, J., Vesala, T. & Tuittila, E-S., 26 Mar 2018, In : Biogeosciences. 15, 6, p. 1749-1761 13 p.

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Soil fluxes of carbonyl sulfide (COS), carbon monoxide, and carbon dioxide in a boreal forest in southern Finland

Sun, W., Kooijmans, L. M. J., Maseyk, K., Chen, H., Mammarella, I., Vesala, T., Levula, J., Keskinen, H. & Seibt, U., 1 Feb 2018, In : Atmospheric Chemistry and Physics. 18, 2, p. 1363-1378 16 p.

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Solar-induced chlorophyll fluorescence is strongly correlated with terrestrial photosynthesis for a wide variety of biomes: First global analysis based on OCO-2 and flux tower observations

Li, X., Xiao, J., He, B., Arain, M. A., Beringer, J., Desai, A. R., Emmel, C., Hollinger, D. Y., Krasnova, A., Mammarella, I., Noe, S. M., Serrano Ortiz, P., Rey-Sanchez, A. C., Rocha, A. V. & Varlagin, A., Sep 2018, In : Global Change Biology. 24, 9, p. 3990-4008 19 p.

Research output: Contribution to journalArticleScientificpeer-review

Standardisation of eddy-covariance flux measurements of methane and nitrous oxide

Nemitz, E., Mammarella, I., Ibrom, A., Aurela, M., Burba, G. G., Dengel, S., Gielen, B., Grelle, A., Heinesch, B., Herbst, M., Hörtnagl, L., Klemedtsson, L., Lindroth, A., Lohila, A., McDermitt, D. K., Meier, P., Merbold, L., Nelson, D., Nicolini, G., Nilsson, M. B. & 3 othersPeltola, O., Rinne, J. & Zahniser, M., Dec 2018, In : International Agrophysics. 32, 4, p. 517-549 39 p.

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Stand dynamics modulate water cycling and mortality risk in droughted tropical forest

da Costa, A. C. L., Rowland, L., Oliveira, R. S., Oliveira, A. A. R., Binks, O. J., Salmon, Y., Vasconcelos, S. S., Junior, J. A. S., Ferreira, L. V., Poyatos, R., Mencuccini, M. & Meir, P., Jan 2018, In : Global Change Biology. 24, 1, p. 249-258 10 p.

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Strong radiative effect induced by clouds and smoke on forest net ecosystem productivity in central Siberia

Park, S-B., Knohl, A., Lucas-Moffat, A. M., Migliavacca, M., Gerbig, C., Vesala, T., Peltola, O., Mammarella, I., Kolle, O., Lavric, J. V., Prokushkin, A. & Heimann, M., 15 Mar 2018, In : Agricultural and Forest Meteorology. 250-251, p. 376-387 12 p.

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Surface energy exchange in pristine and managed boreal peatlands

Alekseychik, P., Mammarella, I., Lindroth, A., Lohila, A., Aurela, M., Laurila, T., Kasurinen, V., Lund, M., Rinne, J., Nilsson, M. B., Peichl, M., Minkkinen, K., Shurpali, N. J., Tuittila, E-S., Martikainen, P. J., Tuovinen, J-P. & Vesala, T., 2018, In : Mires and Peat. 21, 26 p., 14.

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Surrounding species diversity improves subtropical seedlings’ carbon dynamics

Salmon, Y., Li, X., Yang, B., Ma, K., Siegwolf, R. T. W. & Schmid, B., Jul 2018, In : Ecology and Evolution. 8, 14, p. 7055-7067 13 p.

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Synthetic ozone deposition and stomatal uptake at flux tower sites

Ducker, J. A., Holmes, C. D., Keenan, T. F., Fares, S., Goldstein, A. H., Mammarella, I., Munger, J. W. & Schnell, J., 6 Sep 2018, In : Biogeosciences. 15, 17, p. 5395-5413 19 p.

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Technical note: Comparison of methane ebullition modelling approaches used in terrestrial wetland models

Peltola, O., Raivonen, M., Li, X. & Vesala, T., 15 Feb 2018, In : Biogeosciences. 15, 3, p. 937-951 15 p.

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