• PL 66 (Agnes Sjöbergin katu 2), 3027

    HELSINGIN YLIOPISTO

    Finland

Publications 2015 2019

2019

Genetics behind the Biosynthesis of Nonulosonic Acid-Containing Lipooligosaccharides in Campylobacter coli

Kolehmainen, A., Rossi, M., Stupak, J., Li, J., Gilbert, M. & Wakarchuk, W., Apr 2019, In : Journal of Bacteriology. 201, 8, 11 p., 00759-18.

Research output: Contribution to journalArticleScientificpeer-review

Longitudinal Study of Shiga Toxin-Producing Escherichia coli and Campylobacter jejuni on Finnish Dairy Farms and in Raw Milk

Jaakkonen, A., Castro, H., Hallanvuo, S., Ranta, J., Rossi, M., Isidro, J., Lindström, M. & Hakkinen, M., Apr 2019, In : Applied and Environmental Microbiology. 85, 7, 17 p., e02910-18.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Macroevolution of gastric Helicobacter species unveils interspecies admixture and time of divergence (vol 12, pg 2518, 2018)

Smet, A., Yahara, K., Rossi, M., Tay, A., Backert, S., Ensser, A., Fox, J. G., Flahou, B., Ducatelle, R., Haesebrouck, F. & Corander, J., Jul 2019, In : ISME Journal. 13, 7, p. 1890-1890 1 p.

Research output: Contribution to journalArticleScientificpeer-review

Population genetics and characterization of Campylobacter jejuni isolates from western jackdaws and game birds in Finland

Kovanen, S., Rossi, M., Pohja-Mykrä, M., Nieminen, T., Raunio-Saarnisto, M., Sauvala, M., Fredriksson-Ahomaa, M., Hänninen, M-L. & Kivistö, R. I., Feb 2019, In : Applied and Environmental Microbiology. 85, 4, 16 p., UNSP e02365-18.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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2018

A primer on microbial bioinformatics for nonbioinformaticians

Carrico, J. A., Rossi, M., Moran-Gilad, J., Van Domselaar, G. & Ramirez, M., Apr 2018, In : Clinical Microbiology and Infection. 24, 4, p. 342-349 8 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Chapter 4. Water security in changing world

Levengood, J. M., Hörman, A., Hänninen, M-L. & O'Brien, K., 9 Mar 2018, Beond one health: from recognition to results. Herrmann, J. A. & Johnson-Walker, Y. J. (eds.). New York: John Wiley & Sons Ltd. , p. 91-115 25 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

chewBBACA: A complete suite for gene-by-gene schema creation and strain identification

Silva, M., Machado, M. P., Silva, D. N., Rossi, M., Moran-Gilad, J., Santos, S., Ramirez, M. & Carrico, J. A., Mar 2018, In : Microbial Genomics. 4, 3, 7 p., 000166.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Evidence for a primate origin of zoonotic Helicobacter suis colonizing domesticated pigs

Flahou, B., Rossi, M., Bakker, J., Langermans, J. A. M., Heuvelman, E., Solnick, J. V., Martin, M. E., O'Rourke, J., Le Duc Ngoan, Xuan Hoa, N., Nakamura, M., Overby, A., Matsui, H., Ota, H., Matsumoto, T., Foss, D. L., Kopta, L. A., Omotosho, O., Franciosini, M. P., Proietti, P. C. & 13 othersGuo, A., Liu, H., Borilova, G., Bracarense, A. P., Linden, S. K., De Bruyckere, S., Zhang, G., De Witte, C., Smet, A., Pasmans, F., Ducatelle, R., Corander, J. & Haesebrouck, F., Jan 2018, In : ISME Journal. 12, 1, p. 77-86 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Genome-wide identification of geographical segregated genetic markers in Salmonella enterica serovar Typhimurium variant 4,[5],12:i:-

Palma, F., Manfreda, G., Silva, M., Parisi, A., Barker, D. O. R., Taboada, E. N., Pasquali, F. & Rossi, M., 15 Oct 2018, In : Scientific Reports. 8, 12 p., 15251.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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INNUENDO: A cross-sectoral platform for the integration of genomics in the surveillance of food-borne pathogens

Llarena, A-K., Ribeiro-Gonçalves, B. F., Nuno Silva, D., Halkilahti, J., Machado, M. P., Da Silva, M. S., Jaakkonen, A., Isidro, J., Hämäläinen, C., Joenperä, J., Borges, V., Viera, L., Gomes, J. P., Correia, C., Lunden, J., Laukkanen-Ninios, R., Fredriksson-Ahomaa, M., Bikandi, J., Millan, R. S., Martinez-Ballesteros, I. & 11 othersLaorden, L., Mäesaar, M., Grantina-Ievina, L., Hilbert, F., Garaizar, J., Oleastro, M., Nevas, M., Salmenlinna, S., Hakkinen, M., Carriço, J. A. & Rossi, M., 26 Nov 2018, In : EFSA Supporting Publications. 15, 11, p. 1498E 142 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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In silico proteomic and phylogenetic analysis of the outer membrane protein repertoire of gastric Helicobacter species

Bauwens, E., Joosten, M., Taganna, J., Rossi, M., Debraekeleer, A., Tay, A., Peters, F., Backert, S., Fox, J., Ducatelle, R., Remaut, H., Haesebrouck, F. & Smet, A., 18 Oct 2018, In : Scientific Reports. 8, 14 p., 15453.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Macroevolution of gastric Helicobacter species unveils interspecies admixture and time of divergence

Smet, A., Yahara, K., Rossi, M., Tay, A., Backert, S., Armin, E., Fox, J. G., Flahou, B., Ducatelle, R., Haesebrouck, F. & Corander, J., 25 Jun 2018, In : ISME Journal. 12, 10, p. 2518-2531 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Origin, evolution, and distribution of the molecular machinery for biosynthesis of sialylated lipooligosaccharide structures in Campylobacter coli

Culebro, A., Machado, M. P., Carrico, J. A. & Rossi, M., 14 Feb 2018, In : Scientific Reports. 8, 9 p., 3028.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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2017

A survey for selected avian viral pathogens in backyard chicken farms in Finland

Pohjola, L., Tammiranta, N., Ek-Kommonen, C., Soveri, T., Hänninen, M-L., Ahomaa, M. F. & Huovilainen, A., 2017, In : Avian Pathology. 46, 2, p. 166-172 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Backyard poultry flocks in Finland: an infection risk to commercial poultry or humans?

Pohjola, L. K., 7 Apr 2017, Helsinki: University of Helsinki. 152 p.

Research output: ThesisDoctoral ThesisCollection of Articles

Open Access

Campylobacter jejuni survival in a poultry processing plant environment

Garcia-Sanchez, L., Melero, B., Jaime, I., Hanninen, M-L., Rossi, M. & Rovira, J., Aug 2017, In : Food Microbiology. 65, p. 185-192 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Complete genome sequence of the Campylobacter cuniculorum type strain LMG 24588

Miller, W. G., Yee, E., Revez, J., Bono, J. L. & Rossi, M., 2017, In : Genome Announcements. 5, 24, 2 p., e00543-17.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Complete genome sequence of the hippuricase-positive Campylobacter avium Type 5 LMG 24591

Miller, W. G., Chapman, M. H., Yee, E., Revez, J., Bono, J. L. & Rossi, M., 2017, In : Genome Announcements. 5, 43, 2 p., e01221-17.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Helicobacter pylori

Arauro Boira, R. & Hänninen, M-L., 2017, Global Water Pathogens Project. http://www.waterpathogens.org: Part 3 Specific excreted pathogens: environmental and epidemiology aspects http://www.waterpathogens.org/book/campylobacter. Pruden, A., Asbolt, N. & Miller, J. (eds.). Michigan State University, E. Lansing, MI, UNESCO, 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapterProfessional

Open Access
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Members of the family Campylobacteraceae: Campylobacter jejuni, Campylobacter coli.

Pitkänen, T. & Hänninen, M-L., 2017, Global Water Pathogens Project. http://www.waterpathogens.org: Part 3 Specific excreted pathogens: environmental and epidemiology aspects http://www.waterpathogens.org/book/campylobacter. Pruden, A., Asbolt, N. & Miller, J. (eds.). Michigan State University, E. Lansing, MI, UNESCO, 39 p.

Research output: Chapter in Book/Report/Conference proceedingChapterProfessional

Open Access
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Molecular Epidemiology of Campylobacter jejuni in the Genomic Era

Kovanen, S. M., 22 Sep 2017, Helsinki: University of Helsinki. 147 p.

Research output: ThesisDoctoral ThesisCollection of Articles

Open Access

Taudinaiheuttajia kaupunkinaakoissa

Nieminen, T. T., Pohja-Mykrä, M. K., Raunio-Saarnisto, M. & Hänninen, M-L., 2017, In : Suomen eläinlääkärilehti. 2017, 1, p. 36-38

Research output: Contribution to journalArticleProfessional

Open Access
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The Helicobacter cinaedi antigen CAIP participates in atherosclerotic inflammation by promoting the differentiation of macrophages in foam cells

D'Elios, M. M., Vallese, F., Capitani, N., Benagiano, M., Bernardini, M. L., Rossi, M., Rossi, G. P., Ferrari, M., Baldari, C. T., Zanotti, G., de Bernard, M. & Codolo, G., 11 Jan 2017, In : Scientific Reports. 7, 14 p., 40515.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Whole-Genome Sequencing in Epidemiology of Campylobacter jejuni Infections

Llarena, A-K., Taboada, E. & Rossi, M., May 2017, In : Journal of Clinical Microbiology. 55, 5, p. 1269-1275 7 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Open Access
2016

Bacterial quality and safety of packaged fresh leafy vegetables at the retail level in Finland

Nousiainen, L. -L., Joutsen, S., Lunden, J., Hänninen, M. -L. & Fredriksson-Ahomaa, M., 2 Sep 2016, In : International Journal of Food Microbiology. 232, p. 73-79 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Campylobacteriosis: the role of poultry meat

Skarp, C. P. A., Hanninen, M-L. & Rautelin, H. I., Feb 2016, In : Clinical Microbiology and Infection. 22, 2, p. 103-109 7 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Open Access
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Chondroitinase AC: a host-associated genetic feature of Helicobacter bizzozeronii

Namburi, R. B., Berteau, O., Spillmann, D. & Rossi, M., 2016, In : Veterinary Microbiology. 186, p. 21-27 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Divergence between the highly virulent zoonotic pathogen Helicobacter heilmannii and its closest relative, the low-virulence “Helicobacter ailurogastricus” sp. nov.

Joosten, M., Lindén, S., Rossi, M., Chin Yen Tay, A., Skoog, E., Padra, M., Peters, F., Perkins, T., Vandamme, P., Van Nieuwerburgh, F., D'Herde, K., Van den Broeck, W., Flahou, B., Deforce, D., Ducatelle, R., Marshall, B., Haesebrouck, F. & Smet, A., Jan 2016, In : Infection and Immunity. 84, 1, p. 293-306 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Functional genomics in Campylobacter coli identified a novel streptomycin resistance gene located in a hypervariable genomic region

Olkkola, S., Culebro Escandon y Perez, A., Juntunen, P., Hänninen, M-L. & Rossi, M., Jul 2016, In : Microbiology. 162, p. 1157-1166 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access

Large Sequence Diversity within the Biosynthesis Locus and Common Biochemical Features of Campylobacter coli Lipooligosaccharides

Culebro, A., Revez, J., Pascoe, B., Friedmann, Y., Hitchings, M. D., Stupak, J., Sheppard, S. K., Li, J. & Rossi, M., Oct 2016, In : Journal of Bacteriology. 198, 20, p. 2829-2840 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Monitieteinen ja tieteidenvälinen tutkimus tavoitteena parempi eläinten, ihmisen ja ekosysteemin terveys

Translated title of the contribution: Multi- and interdiciplinary reseach supporting interaction of animal, human and ecosustem healthHänninen, M-L., 2016, In : Suomen eläinlääkäriliiton luentokokoelma.. 2016, p. 82-85 4 p.

Research output: Contribution to journalArticleProfessional

Monomorphic genotypes within a generalist lineage of Campylobacter jejuni show signs of global dispersion

Llarena, A-K., Zhang, J., Vehkala, M., Välimäki, N., Hakkinen, M., Hänninen, M-L., Roasto, M., Mäesaar, M., Taboada, E., Barker, D., Garofolo, G., Cammà, C., Di Giannatale, E., Corander, J. & Rossi, M., 1 Oct 2016, In : Microbial Genomics. 2, 14 p.

Research output: Contribution to journalArticleScientificpeer-review

One Health : ihmisten, eläinten ja ympäristön yhteinen terveys

Sukura, A. & Hänninen, M-L., 2016, In : Duodecim. 132, 13-14, p. 1223-1229 7 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Open Access
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Taudinaiheuttajien esiintyminen kaupunkinaakoissa

Nieminen, T. T., Kovanen, S. M., Pohja-Mykrä, M. K., Raunio-Saarnisto, M., Kivistö, R. I. & Hänninen, M-L., 2016, In : Ympäristö ja terveys. 47, 2, p. 46-50 5 p.

Research output: Contribution to journalArticleScientific

The Helicobacter heilmannii hofE and hofF Genes are Essential for Colonization of the Gastric Mucosa and Play a Role in IL-1-Induced Gastric MUC13 Expression

Cheng, L., Rossi, M., Sara, L., Medea, P., Caroline, B., Eva, B., Myrthe, J., Bram, F., Wim, V. D. B., Richard, D., Freddy, H. & Annemieke, S., Dec 2016, In : Helicobacter (Oxford). 21, 6, p. 504-522 19 p.

Research output: Contribution to journalArticleScientificpeer-review

Tracing isolates from domestic human Campylobacter jejuni infections to chicken slaughter batches and swimming water using whole-genome multilocus sequence typing

Kovanen, S., Kivisto, R., Llarena, A-K., Zhang, J., Karkkainen, U-M., Tuuminen, T., Uksila, J., Hakkinen, M., Rossi, M. & Hanninen, M-L., 2 Jun 2016, In : International Journal of Food Microbiology. 226, p. 53-60 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Zoonotic Public Health Hazards in Backyard Chickens

Pohjola, L., Nykäsenoja, S., Kivistö, R., Soveri, T., Huovilainen, A., Hänninen, M. L. & Fredriksson-Ahomaa, M., Aug 2016, In : Zoonoses and Public Health. 63, 5, p. 420-430 11 p.

Research output: Contribution to journalArticleScientificpeer-review

2015

Antimicrobial resistance and Campylobacter jejuni and C. coli

Rossi, M., Olkkola, S., Roasto, M., Kivistö, R. & Hänninen, M-L., 2015, Antimicrobial Resistance and Food Safety: Methods and Techniques. Chen, C-Y., Yan, X. & Jackson, C. R. (eds.). London, UK: Elsevier Academic Press, p. 55-75 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Refinement of Whole-Genome Multilocus Sequence Typing Analysis by Addressing Gene Paralogy

Zhang, J., Halkilahti, J., Hänninen, M-L. & Rossi, M., May 2015, In : Journal of Clinical Microbiology. 53, 5, p. 1765-1767 3 p.

Research output: Contribution to journalArticleScientificpeer-review