Morphogenesis and cellular dynamics

Publications

Research output per year 2005 2010 2013 2014 2016 2022 2023 2023

• 24 Article
• 2 Conference article
• 2 Review Article
• 1 Meeting Abstract
• 1 More
  • 1 Editorial

Research output per year

Research output per year

Search results

• 2023

  Conditional knockdown protocol for studying cellular communication using Drosophila melanogaster wing imaginal disc

  Antson, H., Huang, Y., Tonissoo, T. & Shimmi, O., 15 Dec 2023, In: STAR protocols. 4, 4, 22 p.

  Research output: Contribution to journal › Article › Scientific › peer-review

• Coordination of tissue homeostasis and growth by the Scribble-alpha-Catenin-Septate junction complex

  Huang, Y., Gui, J., Myllymaki, S-M., Mikkola, M. L. & Shimmi, O., 21 Apr 2023, In: iScience. 26, 4, 18 p., 106490.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File

• Editorial: Cell-to-cell communications in tissue homeostasis and repair

  Shimmi, O. & Kankuri, E., 13 Jan 2023, In: Frontiers in Cell and Developmental Biology. 11, 2 p., 1138621.

  Research output: Contribution to journal › Editorial › Scientific › peer-review

  Open Access

  File
• 2022

  Mechano-chemical feedback mediated competition for BMP signalling leads to pattern formation

  Toddie-Moore, D. J., Montanari, M. P., Tran, N. V., Brik, E. M., Antson, H., Salazar-Ciudad, I. & Shimmi, O., Jan 2022, In: Developmental Biology. 481, p. 43-51 9 p.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File

• New resources for the Drosophila 4th chromosome: FRT101F enabled mitotic clones and Bloom syndrome helicase enabled meiotic recombination

  Goldsmith, S. L., Shimell, M. J., Tauscher, P., Daly, S. M., Shimmi, O., O'Connor, M. B. & Newfeld, S. J., Apr 2022, In: G3 - Genes genomes genetics. 12, 4, 12 p.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File

• Regulation of spatial distribution of BMP ligands for pattern formation

  Montanari, M. P., Tran, N. V. & Shimmi, O., Jan 2022, In: Developmental Dynamics. 251, 1, p. 198-212 15 p.

  Research output: Contribution to journal › Review Article › peer-review

  Open Access

  File

• Scribble and alpha-Catenin cooperatively regulate epithelial homeostasis and growth

  Huang, Y., Gui, J., Myllymäki, S-M., Roy, K., Tonissoo, T., Mikkola, M. L. & Shimmi, O., 21 Sep 2022, In: Frontiers in Cell and Developmental Biology. 10, 12 p., 912001.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File

• The developing wing crossvein of Drosophila melanogaster: a fascinating model for signaling and morphogenesis

  Antson, H., Tonissoo, T. & Shimmi, O., 31 Dec 2022, In: Fly. 16, 1, p. 118-127 10 p.

  Research output: Contribution to journal › Review Article › peer-review

  Open Access

  File
• 2019

  Coupling between dynamic 3D tissue architecture and BMP morphogen signaling during Drosophila wing morphogenesis

  Gui, J., Huang, Y., Kracklauer, M., Toddie-Moore, D. J., Kikushima, K., Nix, S., Ishimoto, Y. & Shimmi, O., 5 Mar 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 10, p. 4352-4361 10 p.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File
• 2018

  Quantitative Morphological Variation in the Developing Drosophila Wing

  Matamoro-Vidal, A., Huang, Y., Salazar-Ciudad, I., Shimmi, O. & Houle, D., Jul 2018, In: G3 - Genes genomes genetics. 8, 7, p. 2399-2409 11 p.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File

• Wing vein development in the sawfly Athalia rosae is regulated by spatial transcription of Dpp/BMP signaling components

  Huang, Y., Hatakeyama, M. & Shimmi, O., Jul 2018, In: Arthropod Structure & Development. 47, 4, p. 408-415 8 p.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File
• 2017

  The molecular and cellular mechanisms coupling epithelial morphogenesis and developmental signalling

  Toddie-Moore, D., Marin-Riera, M., Salazar-Ciudad, I. & Shimmi, O., Jul 2017, In: Mechanisms of Development. 145, p. S94-S94 1 p.

  Research output: Contribution to journal › Meeting Abstract › peer-review
• 2016

  Adaptive protein divergence of BMP ligands takes place under developmental and evolutionary constraints

  Tauscher, P., Gui, J. & Shimmi, O., 18 Oct 2016, In: Development. 143, 20, p. 3742-3750 9 p.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File

• lolal Is an Evolutionarily New Epigenetic Regulator of dpp Transcription during Dorsal-Ventral Axis Formation

  Quijano, J. C., Wisotzkey, R. G., Tran, N. L., Huang, Y., Stinchfield, M. J., Haerry, T. E., Shimmi, O. & Newfeld, S. J., 8 Jul 2016, In: Molecular Biology and Evolution. 33, 10, p. 2621-2632

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File

• Scribbled Optimizes BMP Signaling through its Receptor Internalization to the Rab5 Endosome and Promote Robust Epithelial Morphogenesis

  Gui, J., Huang, Y. & Shimmi, O., 4 Nov 2016, In: PLoS Genetics. 12, 11, 19 p., e1006424.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File
• 2014

  Cleavage of the Drosophila screw prodomain is critical for a dynamic BMP morphogen gradient in embryogenesis

  Künnapuu, J., Tauscher, P. M., Tiusanen, N., Nguyen, M., Löytynoja, A., Arora, K. & Shimmi, O., 15 May 2014, In: Developmental Biology. 389, 2, p. 149-159 11 p.

  Research output: Contribution to journal › Article › Scientific › peer-review

• Insights into the molecular mechanisms underlying diversified wing venation among insects

  Shimmi, O., Matsuda, S. & Hatakeyama, M., 22 Aug 2014, In: Proceedings of the Royal Society B. Biological Sciences. 281, 1789, 8 p., 20140264.

  Research output: Contribution to journal › Article › Scientific › peer-review

• Ter94/VCP Is a Novel Component Involved in BMP Signaling

  Zeng, Z., de Gortner, D., Kowalski, M., ten Dijke, P. & Shimmi, O., 2014, In: PLoS One. 9, 12, 18 p., e114475 .

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File
• 2013

  A feed-forward loop coupling extracellular BMP transport and morphogenesis in Drosophila wing

  Matsuda, S., Blanco, J. & Shimmi, O., Mar 2013, In: PLoS Genetics. 9, 3, 11 p., e1003403.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

  File

• Dpp/BMP transport mechanism is required for wing venation in the sawfly Athalia rosae.

  Matsuda, S., Yoshiyama, N., Künnapuu-Vulli, J., Hatakeyama, M. & Shimmi, O., May 2013, In: Insect Biochemistry and Molecular Biology. 43, 5, p. 466-473 8 p.

  Research output: Contribution to journal › Article › Scientific › peer-review

• New insights into extracellular and post-translational regulation of TGF-β family signalling pathways.

  Shimmi, O. & Newfeld, S. J., Jul 2013, In: Journal of Biochemistry. 154, 1, p. 11-19 9 p.

  Research output: Contribution to journal › Article › Scientific › peer-review
• 2012

  Directional transport and active retention of Dpp/BMP create wing vein patterns in Drosophila.

  Matsuda, S. & Shimmi, O., 2012, In: Developmental Biology. 366, 2, p. 153-162 10 p.

  Research output: Contribution to journal › Article › Scientific › peer-review

• Fat facets deubiquitylation of Medea/Smad4 modulates interpretation of a Dpp morphogen gradient

  Stinchfield, M. J., Takaesu, N. T., Quijano, J. C., Castillo, A. M., Tiusanen, N., Shimmi, O., Enzo, E., Dupont, S., Piccolo, S. & Newfeld, S. J., 2012, In: Development. 139, 15, p. 2721-2729 9 p.

  Research output: Contribution to journal › Article › Scientific › peer-review
• 2010

  Directional transport of Dpp/BMP draws diversified wing vein patterns in insects

  Matsuda, S., Yoshiyama, N., Kunnapuu, J., Hatakeyama, M. & Shimmi, O., 2010, In: Differentiation. 80, Supplement 1, p. S27-S27 1 p.

  Research output: Contribution to journal › Conference article › Scientific › peer-review

• Evolutional imprints on the sequences of BMP2/4/DPP type proteins

  Kunnapuu, J. & Shimmi, O., 2010, In: Fly. 4, p. 21-23 3 p.

  Research output: Contribution to journal › Article › Scientific › peer-review

  Open Access

• Organism-Scale Modeling of Early Drosophila Patterning via Bone Morphogenetic Proteins

  Ulmulis, D. M., Shimmi, O., O'Connor, M. B. & Othmer, H. G., 2010, In: Developmental Cell. 18, p. 260-274 15 p.

  Research output: Contribution to journal › Article › Scientific › peer-review
• 2009

  Facilitated transport and active retention of BMP draw diversified wing vein patterns in insects

  Matsuda, S., Hatakeyama, M. & Shimmi, O., 2009, In: Mechanisms of Ageing and Development. 126, p. S81-S82 2 p.

  Research output: Contribution to journal › Conference article › Scientific › peer-review

• The Drosophila DPP signal is produced by cleavage of its proprotein at evolutionary diversified furin-recognition sites

  Kunnapuu, J., Björkgren, I. & Shimmi, O., 2009, In: Proceedings of the National Academy of Sciences of the United States of America. 106, 21, p. 8501-8506 6 p.

  Research output: Contribution to journal › Article › Scientific › peer-review
• 2008

  Dally regulates Dpp morphogen gradient formation by stabilizing Dpp on the cell surface

  Akiyama, T., Kamimura, K., Firkus, C., Takeo, S., Shimmi, O. & Nakato, H., 2008, In: Developmental Biology. 313, 1, p. 408-419 12 p.

  Research output: Contribution to journal › Article › Scientific › peer-review
• 2005

  The crossveinless gene encodes a new member of the Twisted gastrulation family of BMP-binding proteins which, with Short gastrulation, promotes BMP signaling in the crossveins of the Drosophila wing

  Shimmi, O., Ralston, A., Blair, S. S. & O'Connor, M. B., 2005, In: Developmental Biology. 282, p. 70-83 14 p.

  Research output: Contribution to journal › Article › Scientific › peer-review