• P.O. Box 56 (Viikinkaari 9)

    00014 University of Helsinki

    Finland

Publications 1998 2019

2019

Introduction to Special Issue of Molecular Plant Pathology - “Extracellular and intracellular perception of plant viruses”.

Aranda, M., Mäkinen, K. & Verchot, J., 2 Jun 2019, (Accepted/In press)

Research output: Book/ReportAnthology or special issueScientific

Open Access
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The significance of methionine cycle enzymes in plant virus infections

Mäkinen, K. M. & Swarnalok, D., Aug 2019, In : Current Opinion in Plant Biology. 50, p. 67-75 9 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Open Access
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2018

Disruption of the methionine cycle and reduced cellular gluthathione levels underlie potex-potyvirus synergism in Nicotiana benthamiana

De, S., Chavez-Calvillo, G., Wahlsten, M. & Mäkinen, K., Aug 2018, In : Molecular Plant Pathology. 19, 8, p. 1820-1835 16 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Host-virus interactions on the way from potyvirus replication to translation

De, S., Lohmus, A., Pollari, M. E., Saha, S. & Mäkinen, K. M., 2018, PLANT VIRUSES: DIVERSITY, HOST INTERACTION AND MANAGEMENTS. Gaur, R. K., Khurana, S. M. P. & Yuri, D. (eds.). CRC Press, Taylor & Francis Group

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

2017

Coat Protein Regulation by CK2, CPIP, HSP70, and CHIP Is Required for Potato Virus A Replication and Coat Protein Accumulation

Lohmus, A., Hafren, A. & Mäkinen, K., Feb 2017, In : Journal of Virology. 91, 3, 14 p., 01316.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Plant RNA Regulatory Network and RNA Granules in Virus Infection

Makinen, K., Lohmus, A. & Pollari, M., 11 Dec 2017, In : Frontiers in plant science. 8, 15 p., 2093.

Research output: Contribution to journalReview ArticleScientificpeer-review

Open Access
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Molecular insights into a putative potyvirus RNA encapsidation pathway and potyvirus particles as enzyme nano-carriers

Besong-Ndika, J. E., 2016, Helsinki: University of Helsinki. 57 p.

Research output: ThesisDoctoral ThesisCollection of Articles

Molecular insights into the function of the viral RNA silencing suppressor HCPro

Ivanov, K., Eskelin, K. J., Bašić, M., De, S., Lohmus, A., Varjosalo, M. T. & Mäkinen, K. M., 2016, In : Plant Journal. 85, 1, p. 30-45 16 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Protein composition of 6K2-induced membrane structures formed during Potato virus A infection

Lohmus, A., Varjosalo, M. & Mäkinen, K., Aug 2016, In : Molecular Plant Pathology. 17, 6, p. 943-958 16 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Towards the reconstitution of a two-enzyme cascade for resveratrol synthesis on potyvirus particles

Besong Epse Ndika, J. E., Wahlsten, M., Cardinale, D., Pille, J., Walter, J., Michon, T. & Mäkinen, K. M., 10 Feb 2016, In : Frontiers in plant science. 7, 12 p., 89.

Research output: Contribution to journalArticleScientificpeer-review

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2015

Cotranslational Coat Protein-Mediated Inhibition of Potyviral RNA Translation

Besong Epse Ndika, J. E., Ivanov, K., Hafren, A. J., Michon, T. & Mäkinen, K. M., Apr 2015, In : Journal of Virology. 89, 8, p. 4237-4248 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access

Electrochemical Atomic Force Microscopy Imaging of Redox-Immunomarked Proteins on Native Potyviruses: From Subparticle to Single-Protein Resolution

Nault, L., Taofifenua, C., Anne, A., Chovin, A., Demaille, C., Besong, J., Cardinale, D., Carette, N., Michon, T. & Walter, J., May 2015, In : ACS Nano. 9, 5, p. 4911-4924 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Formation of Potato virus A-induced RNA granules and viral translation are interrelated processes required for optimal virus accumulation

Hafren, A. J., Lohmus, A. & Mäkinen, K. M., 7 Dec 2015, In : PLoS Pathogens. 11, 12, 28 p., e1005314.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Virus Diversity to Explore Various Kinds of Enzyme Nanocarriers

Besong Epse Ndika, J. E., Walter, J. & Mäkinen, K. M., 9 Oct 2015, Enzyme Nanocarriers . Cardinale, D. & Michon, T. (eds.). CRC Press, p. 1-44 44 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

2014

Analysis of plant ribosomes with asymmetric flow field-flow fractionation

Pitkanen, L., Tuomainen, P. & Eskelin, K., 2014, In : Analytical and Bioanalytical Chemistry. 406, 6, p. 1629-1637 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Intracellular coordination of potyviral RNA functions in infection

Makinen, K. & Hafren, A., 26 Mar 2014, In : Frontiers in plant science. 5, 12 p., 110.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Molecular and cellular mechanisms underlying potyvirus infection

Ivanov, K. I., Eskelin, K., Lohmus, A. & Makinen, K., 2014, In : Journal of General Virology. 95, p. 1415-1429 15 p.

Research output: Contribution to journalArticleScientificpeer-review

2013

A General Strategy for Ordered Non-covalent Protein Assembly on Well-defined Nano-scaffolds.

Pille, J., Cardinale, D., Carette, N., De Primo, C., Besong-Ndika, J., Walter, J., Lecoq, H., van Eldijk, M. B., Smits, F. C. M., Schoffelen, S., van Hest, J. C. M., Mäkinen, K. & Michon, T., 2013, In : Biomacromolecules. 14, 12, p. 4351–4359 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Phosphorylation Regulates FOXC2-Mediated Transcription in Lymphatic Endothelial Cells

Ivanov, K. I., Agalarov, Y., Valmu, L., Samuilova, O., Liebl, J., Houhou, N., Maby-El Hajjami, H., Norrmen, C., Jaquet, M., Miura, N., Zangger, N., Yla-Herttuala, S., Delorenzi, M. & Petrova, T. V., Oct 2013, In : Molecular and Cellular Biology. 33, 19, p. 3749-3761 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Ribosomal Protein P0 Promotes Potato Virus A Infection and Functions in Viral Translation Together with VPg and eIF(iso)4E

Hafren, A., Eskelin, K. & Mäkinen, K., Apr 2013, In : Journal of Virology. 87, 8, p. 4302-4312 11 p.

Research output: Contribution to journalArticleScientificpeer-review

2012

Abiotic stress responses promote Potato virus A infection in Nicotiana benthamiana

Suntio, T. & Mäkinen, K., 2012, In : Molecular Plant Pathology. 13, 7, p. 775–784 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Coat proteins, host factors and plant viral replication.

Ivanov, K. I. & Makinen, K., 2012, In : Current opinion in virology. 2, 6, p. 706-712 7 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Functional regulation of PVBV Nuclear Inclusion protein-a protease activity upon interaction with Viral Protein genome-linked and phosphorylation.

Mathur, C., Jimsheena, V. K., Banerjee, S., Mäkinen, K., Gowda, L. R. & Savithri, H. S., 2012, In : Virology. 422, 2, p. 254-64 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Intrinsic disorder in genome-linked viral proteins VPgs of potyviruses

Chroboczek, J., Hebrard, E., Mäkinen, K., Michon, T. & Rantalainen, K., 2012, Flexible Viruses: Structural Disorder in Viral Proteins. Uversky, V. & Longhi, S. (eds.). Hoboken, New Jersey: Wiley, p. 277-312 (Wiley series in protein and peptide science; no. 11).

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Sesbanian mosaic virus (SeMV) infectious clone: possible mechanism of 3' and 5' end repair and role of polyprotein processing in viral replication

Kunduri, G., Mäkinen, K. & Savithri, HS., 15 Feb 2012, In : PLoS One. 7, 2, p. e31190 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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2011

ATPase activity of a yeast secretory glycoprotein allows ER exit during inactivation of COPII components Sec24p and Sec13p

Suntio, T., Shiryaev, S. A. & Makarow, M., 2011, In : Yeast : a forum for yeast researchers. 28, 6, p. 453-465 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Emerging picture of host chaperone and cyclophilin roles in RNA virus replication.

Nagy, P., Wang, R. Y., Pogany, J., Hafren, A. J. & Mäkinen, K., 2011, In : Virology. 411, 2, p. 374-382 9 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Potyviral VPg Enhances Viral RNA Translation and Inhibits Reporter mRNA Translation In Planta

Eskelin, K., Hafren, A., Rantalainen, K. & Mäkinen, K., 2011, In : Journal of Virology. 85, p. 9210-9221

Research output: Contribution to journalArticleScientificpeer-review

Structural flexibility allows the functional diversity of potyviral genome -linked protein VPg

Rantalainen, K., Eskelin, K., Tompa, P. & Mäkinen, K., Mar 2011, In : Journal of Virology. 85, 5, p. 2449-2457 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Tetracycline Resistance Genes Persist at Aquaculture Farms in the Absence of Selection Pressure

Tamminen, M., Karkman, A., Lohmus, A., Muziasari, W. I., Takasu, H., Wada, S., Suzuki, S. & Virta, M., 2011, In : Environmental Science & Technology. 45, 2, p. 386–391 6 p.

Research output: Contribution to journalArticleScientificpeer-review

2010

HSP70 and Its Cochaperone CPIP Promote Potyvirus Infection in Nicotiana benthamiana by Regulating Viral Coat Protein Functions

Hafren, A., Hofius, D., Rönnholm, G., Sonnewald, U. & Mäkinen, K., 2010, In : Plant Cell. 22, p. 523-535 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Renilla luciferase-based quantitation of Potato virus A infection initiated with Agrobacterium infiltration of N. benthamiana leaves

Eskelin, K., Suntio, T., Hyvärinen, S., Hafren, A. & Mäkinen, K., 2010, In : Journal of Virological Methods. 164, 1-2, p. 101-110 10 p.

Research output: Contribution to journalArticleScientificpeer-review

2009

Interaction of a potyviral VPg with anionic phospholipid vesicles

Rantalainen, K., Christensen, P. A., Hafren, A., Otzen, D. E., Kalkkinen, N. & Mäkinen, K., 2009, In : Virology. 395, 1, p. 114-120 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Production of a recombinant full-length collagen type I -1 and of a 45-kDa collagen type I -1 fragment in barley seeds

Eskelin, K., Ritala, A., Suntio, T., Blumer, S., Holkeri, H., Wahlström, E. H., Baez, J., Mäkinen, K. & Nuutila, A. M., 2009, In : Plant biotechnology journal. 7, 7, p. 657-672 16 p.

Research output: Contribution to journalArticleScientificpeer-review

Production of a recombinant full-length collagen type I alpha-1 and of a 45-kDa collagen type I alpha-1 fragment in barley seeds.

Eskelin K, Ritala A, Suntio T, Blumer S, Holkeri H, Wahlström EH, Baez J, Mäkinen K, Maria NA, 2009, In : Plant biotechnology journal.

Research output: Contribution to journalArticleScientificpeer-review

2008

Alternate pathways of the early secretory route in yeast

Suntio, T., 2008, Helsinki: University of Helsinki. 86 p.

Research output: ThesisDoctoral ThesisMonograph

Atomic force microscopy of potato virus A

Obraztsova, E. A., Kalinina, N. O., Taliansky, M. E., Gabrenaite-Verkhovskaya, R., Mäkinen, K. & Yaminsky, I. V., 2008, In : Russian Academy of Sciences. Colloid Journal. 70, p. 199-201 3 p.

Research output: Contribution to journalArticleScientificpeer-review

Cylindrical inclusion protein of potato virus A is associated with a subpopulation of particles isolated from infected plants

Gabrenaite-Verhovskaya, R., Andreev, I. A., Kalinina, N. O., Torrance, L., Taliansky, M. E. & Mäkinen, K., 2008, In : Journal of General Virology. 89, 3, p. 829-838 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Inhibition of angiotensin converting enzyme I caused by autolysis of potato proteins by enzymatic activities confined to different parts of the potato tuber

Mäkinen, S., Kelloniemi, J., Pihlanto, A., Mäkinen, K., Korhonen, H., Hopia, A., Valkonen, J. P. T. & Valkonen, J., 2008, In : Journal of Agricultural and Food Chemistry. 56, 21, p. 9875-9883 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Phosphorylation analysis of plant viral proteins

Makinen, K. M. & Ivanov, K. I., 2008, In : Methods in molecular biology. 451, p. 339-359 21 p.

Research output: Contribution to journalArticleScientificpeer-review

Phosphorylation analysis of plant virus proteins

Mäkinen, K. & Ivanov, K., 2008, Plant Virology Protocols Vol 2: From viral sequence to protein function. Nagy, P. (ed.). Humana Press, 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Plant biotechnology for deeper understanding, wider use and further development of agricultural and horticultural crops

Elomaa, P., Joensuu, J. J., Korpelainen, H., Mäkinen, K., Niklander-Teeri, V., Pirhonen, M., Joensuu, J., Seppänen, M., Teeri, T. & Valkonen, J., 2008, In : Agricultural and Food Science. 17, 3, p. 307-324 18 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Potato virus A genome-linked protein VPg is an intrinsically disordered molten globule-like protein with a hydrophobic core

Rantalainen, K. I., Uversky, V. N., Permi, P., Kalkkinen, N., Dunker, A. K. & Mäkinen, K., 2008, In : Virology. 377, 2, p. 280-288 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Production of a recombinant industrial protein using barley cell cultures

Ritala, A., Wahlström, E. H., Holkeri, H., Hafren, A., Mäkeläinen, K., Baez, J., Mäkinen, K. & Nuutila, A. M., 2008, In : Protein Expression and Purification. 59, 2, p. 274-281 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Purification of viral genome-linked protein VPg from potato virus A-infected plants reveals several post-translationally modified forms of the protein

Hafren, A. & Mäkinen, K., 2008, In : Journal of General Virology. 89, 6, p. 1509-1518 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Three heterologous proteins simultaneously expressed from a chimeric potyvirus: infectivity, stability and the correlation of genome and virion lenghts

Kelloniemi, J., Mäkinen, K., Valkonen, J. P. T. & Valkonen, J., 2008, In : Virus Research. 135, p. 282-291 10 p.

Research output: Contribution to journalArticleScientificpeer-review

2007

Testing of internal translation initiation via dicistronic constructs in yeast is complicated by production of extraneous transcripts

Mäkeläinen, K. J. & Mäkinen, K., 2007, In : Gene. 391, p. 275-284 10 p.

Research output: Contribution to journalArticleScientificpeer-review