Probabilistic Mechanistic Models for Genomics research group / Antti Honkela

  • PL 68 (Gustaf Hällströmin katu 2b), B327

    HELSINGIN YLIOPISTO

    Finland

International and National Collaboration Publications and projects within past five years.

Publications 2011 2018

Efficient differentially private learning improves drug sensitivity prediction

Honkela, A., Das, M., Nieminen, A., Dikmen, O. & Kaski, S., 6 Feb 2018, In : Biology Direct. 13, 12 p., 1.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

GPrank: an R package for detecting dynamic elements from genome-wide time series

Topa, H. & Honkela, A., 4 Oct 2018, In : BMC Bioinformatics. 19, 6 p., 367.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

Identifying Bacterial Strains from Sequencing Data

Mäklin, T., Corander, J. & Honkela, A., 2018, Data Mining for Systems Biology: Methods and Protocols. Mamitsuka, H. (ed.). 2 ed. New York, NY: Humana press, p. 1-7 7 p. (Methods in Molecular Biology; vol. 1807).

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Differentially private Bayesian learning on distributed data

Heikkila, M., Lagerspetz, E., Kaski, S., Shimizu, K., Tarkoma, S. & Honkela, A., 2017, Advances in Neural Information Processing Systems 30 (NIPS 2017). Guyon, I., Luxburg, U. V., Bengio, S., Wallach, H., Fergus, R., Vishwanathan, S. & Garnett, R. (eds.). NEURAL INFORMATION PROCESSING SYSTEMS (NIPS), Vol. 30. 10 p. (Advances in Neural Information Processing Systems; vol. 30).

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Open Access
File

Predicting stimulation-dependent enhancer-promoter interactions from ChIP-Seq time course data

Dzida, T., Iqbal, M., Charapitsa, I., Reid, G., Stunnenberg, H., Matarese, F., Grote, K., Honkela, A. & Rattray, M., 28 Sep 2017, In : PeerJ. 5, 23 p., 3742.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

Activities 2011 2018

Privacy in Machine Learning and Artificial Intelligence 2018

Antti Honkela (Member of organizing committee)
2018

Activity: Participating in or organising an event typesOrganisation and participation in conferences, workshops, courses, seminars

Machine Learning Open Source Software 2018: Sustainable communities

Antti Honkela (Member of organizing committee)
2018

Activity: Participating in or organising an event typesOrganisation and participation in conferences, workshops, courses, seminars

Thirty-second Conference on Neural Information Processing Systems (Event)

Antti Honkela (Programme Committee Member)
2018

Activity: Publication peer-review and editorial work typesEditor of research anthology/collection/conference proceedings

Pre-examiner of PhD thesis of Sini Rautio

Antti Honkela (Pre-examiner)
2018

Activity: Examination typesPre-examiner of doctoral thesis

The 22nd International Conference on Artificial Intelligence and Statistics (Event)

Antti Honkela (Programme Committee Member)
2018

Activity: Publication peer-review and editorial work typesEditor of research anthology/collection/conference proceedings

Press / Media

Researchers Develop New Security Method for AI to Keep Data Private

Antti Honkela

26/12/2017

1 item of media coverage

Press/Media: Press / Media

New AI method keeps data private

Antti Honkela & Samuel Kaski

20/12/201721/12/2017

5 items of media coverage

Press/Media: Press / Media

New AI Method Keeps Data Private

Antti Honkela & Samuel Kaski

20/12/2017

1 item of media coverage

Press/Media: Press / Media

Computational modelling sheds new light on core cell functions

Antti Honkela

08/10/2015

1 item of media coverage

Press/Media: Press / Media

Most accurate measures of gene expression

Antti Honkela

04/09/201406/09/2014

3 items of media coverage

Press/Media: Press / Media