Publications 2004 2019

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2019

A comprehensive evaluation of predictive performance of 33 species distribution models at species and community levels

Norberg, A., Abrego Antia, N., Blanchet, F. G., Adler, F. R., Anderson, B. J., Anttila, J., Araújo, M. B., Dallas, T. A., Dunson, D., Elith, J., Foster, S., Fox, R., Franklin, J., Godsoe, W., Guisan, A., O'Hara, B., Hill, N. A., Holt, R. D., Hui, F. K. C., Husby, M. & 15 othersKålås, J. A., Lehikoinen, A., Luoto, M., Mod, H. K., Newell, G., Renner, I., Roslin, T. V., Soininen, J., Thuiller, W., Vanhatalo, J. P., Warton, D., White, M., Zimmermann, N. E., Gravel, D. & Ovaskainen, O. T., 2 May 2019, In : Ecological Monographs.

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Additive multivariate Gaussian processes for joint species distribution modeling with heterogeneous data

Vanhatalo, J. P., Hartmann, M. & Veneranta, L., 2019, In : Bayesian analysis.

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A Gaussian process model and Bayesian variable selection for mapping function-valued quantitative traits with incomplete phenotype data

Vanhatalo, J. P., Li, Z. & Sillanpää, M., 2019, In : Bioinformatics.

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Assessing changes in arthropod predator-prey interactions through DNA-based gut content analysis-variable environment, stable diet

Eitzinger, B., Abrego, N., Gravel, D., Huotari, T., Vesterinen, E. J. & Roslin, T., Jan 2019, In : Molecular Ecology. 28, 2, p. 266-280 15 p.

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Congruent patterns of functional diversity in saproxylic beetles and fungi across European beech forests

Hagge, J., Abrego, N., Baessler, C., Bouget, C., Brin, A., Brustel, H., Christensen, M., Gossner, M. M., Heilmann-Clausen, J., Horak, A., Gruppe, A., Isacsson, G., Koehler, F., Lachat, T., Larrieu, L., Schlaghamersky, J., Thorn, S., Zapponi, L. & Mueller, J., May 2019, In : Journal of Biogeography. 46, 5, p. 1054-1065 12 p.

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Contrasting latitudinal gradients of body size in helminth parasites and their hosts

Dallas, T., Gehman, A-L. M., Aguirre, A. A., Budischak, S. A., Drake, J. M., Farrell, M. J., Ghai, R., Huang, S. & Morales-Castilla, I., Jun 2019, In : Global Ecology and Biogeography. 28, 6, p. 804-813 10 p.

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Developmental stage-dependent response and preference for host plant quality in an insect herbivore

Salgado, A. L. & Saastamoinen, M., 1 Mar 2019, In : Animal Behaviour. 150, p. 27-38 12 p.

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Diverse and variable virus communities in wild plant populations revealed by metagenomic tools

Susi, H., Filloux, D., Frilander, M. J., Roumagnac, P. & Laine, A-L., 11 Jan 2019, In : PeerJ. 7, 24 p., 6140.

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EcoMem: An R package for quantifying ecological memory

Itter, M. S., Vanhatalo, J. & Finley, A. O., 2019, In : Environmental Modelling & Software. 119, p. 305-308 4 p.

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Effect of wet storage conditions on potato tuber transcriptome, phytohormones and growth

Peivastegan, B., Hadizadeh, I., Nykyri, J., Nielsen, K. L., Somervuo, P., Sipari, N., Tran, C. & Pirhonen, M., 17 Jun 2019, In : BMC Plant Biology. 19, 18 p., 262.

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Finding flies in the mushroom soup: Host specificity of fungus-associated communities revisited with a novel molecular method

Koskinen, J., Roslin, T., Nyman, T., Abrego, N., Michell, C. & Vesterinen, E. J., Jan 2019, In : Molecular Ecology. 28, 2, p. 190-202 13 p.

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Flower-visitor communities of an arcto-alpine plant-Global patterns in species richness, phylogenetic diversity and ecological functioning

Tiusanen, M., Huotari, T., Hebert, P. D. N., Andersson, T., Asmus, A., Bety, J., Davis, E., Gale, J., Hardwick, B., Hik, D., Körner, C., Lanctot, R. B., Loonen, M. J. J. E., Partanen, R., Reischke, K., Saalfeld, S. T., Senez-Gagnon, F., Smith, P. A., Sulavik, J., Syvanpera, I. & 5 othersUrbanowicz, C., Williams, S., Woodard, P., Zaika, Y. & Roslin, T., Jan 2019, In : Molecular Ecology. 28, 2, p. 318-335 18 p.

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Handbook for the measurement of macrofungal functional traits: A start with basidiomycete wood fungi

Dawson, S. K., Boddy, L., Halbwachs, H., Bässler, C., Andrew, C., Crowther, T. W., Heilmann-Clausen, J., Nordén, J., Ovaskainen, O. & Jönsson, M., Mar 2019, In : Functional Ecology. 33, 3

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High Wolbachia Strain Diversity in a Clade of Dung Beetles Endemic to Madagascar

Miraldo, A. & Duplouy, A., 8 May 2019, In : Frontiers in Ecology and Evolution. 7, 8 p., 157.

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Impacts of urbanization on insect herbivory and plant defences in oak trees

Moreira, X., Abdala-Roberts, L., Mier y Teran, J. C. B., Covelo, F., de la Mata, R., Francisco, M., Hardwick, B., Pires, R. M., Roslin, T., Schigel, D. S., ten Hoopen, J. P. J. G., Timmermans, B. G. H., van Dijk, L. J. A., Castagneyrol, B. & Tack, A. J. M., Jan 2019, In : Oikos. 128, 1, p. 113-123 11 p.

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Index-based approach for estimating vulnerability of Arctic biota to oil spills

Nevalainen, M. K., Vanhatalo, J. & Helle, I., 2019, (Accepted/In press) In : Ecosphere.

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Integrating experimental and distribution data to predict future species patterns

Kotta, J., Vanhatalo, J. P., Jänes, H., Orav-Kotta, H., Rugiu, L., Jormalainen, V., Bobsien, I., Viitasalo, M., Virtanen, E., Nyström Sandman, A., Isaeus, M., Leidenberger, S., Jonsson, P. R. & Johannesson, K., 12 Feb 2019, In : Scientific Reports. 9, 14 p., 1821.

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Laplace approximation and natural gradient for Gaussian process regression with heteroscedastic Student-t model

Hartmann, M. & Vanhatalo, J., Jul 2019, In : Statistics and Computing. 29, 4, p. 753–773 21 p.

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Lichens facilitate seedling recruitment in alpine heath

Nystuen, K. O., Sundsdal, K., Opedal, Ø. H., Holien, H., Strimbeck, G. R. & Graae, B. J., 28 May 2019, In : Journal of Vegetation Science. 0, ja

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Long-term shifts in water quality show scale-dependent bioindicator responses across Russia – Insights from 40 year-long bioindicator monitoring program

Ovaskainen, O. T., Weigel, B. M., Potyutko, O. & Buyvolov, Y., Mar 2019, In : Ecological Indicators. 98, p. 476-482 7 p.

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Moderate plant water stress improves larval development, and impacts immunity and gut microbiota of a specialist herbivore

Rosa, E., Minard, G., Lindholm, J. & Saastamoinen, M., 20 Feb 2019, In : PLoS One. 14, 2, 13 p., 0204292.

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Non-stationary Gaussian models with physical barriers

Bakka, H., Vanhatalo, J., Illian, J. B., Simpson, D. & Rue, H., Mar 2019, In : Spatial statistics. 29, p. 268-288 21 p.

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Rainfall seasonality predicts the germination behavior of a tropical dry-forest vine

Martins, A. A., Opedal, Ø. H., Armbruster, W. S. & Pélabon, C., 4 Apr 2019, In : Ecology and Evolution.

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Scaling up the effects of inbreeding depression from individuals to metapopulations

Nonaka, E., Sirén, J., Somervuo, P., Ruokolainen, L., Ovaskainen, O. & Hanski, I., 11 May 2019, In : Journal of Animal Ecology.

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Soil fertility in boreal forest relates to root-driven nitrogen retention and carbon sequestration in the mor layer

Kyaschenko, J., Ovaskainen, O., Ekblad, A., Hagenbo, A., Karltun, E., Clemmensen, K. E. & Lindahl, B. D., Feb 2019, In : New Phytologist. 221, 3, p. 1492-1502 11 p.

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Time-frequency warping of spectrograms applied to bird sound analyses

Somervuo, P., 4 May 2019, In : Bioacoustics. 28, 3, p. 257-268 12 p.

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Tissue-specific study across the stem reveals the chemistry and transcriptome dynamics of birch bark.

Alonso Serra, J. A., Safronov, O., Lim, K-J., Fraser-Miller, S., Blokhina, O. B., Campilho, A., Chong, S-L., Fagerstedt, K. V., Haavikko, R. H., Helariutta, Y., Immanen, J. J. M., Kangasjärvi, J. S., Kauppila, T. J., Lehtonen, M., Ragni, L., Rajaraman, S., Räsänen, R-M., Safdari, P., Tenkanen, T. M., Yli-Kauhaluoma, J. T. & 4 othersTeeri, T. H., Strachan, C. J., Nieminen, K. & Salojärvi, J. T., Jun 2019, In : New Phytologist. 222, 4, p. 1816-1831 16 p.

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Traditional plant functional groups explain variation in economic but not size-related traits across the tundra biome

Thomas, H. J. D., Myers-Smith, I. H., Bjorkman, A. D., Elmendorf, S. C., Blok, D., Cornelissen, J. H. C., Forbes, B. C., Hollister, R. D., Normand, S., Prevey, J. S., Rixen, C., Schaepman-Strub, G., Wilmking, M., Wipf, S., Cornwell, W. K., Kattge, J., Goetz, S. J., Guay, K. C., Alatalo, J. M., Anadon-Rosell, A. & 69 othersAngers-Blondin, S., Berner, L. T., Bjork, R. G., Buchwal, A., Buras, A., Carbognani, M., Christie, K., Collier, L. S., Cooper, E. J., Eskelinen, A., Frei, E. R., Grau, O., Grogan, P., Hallinger, M., Heijmans, M. M. P. D., Hermanutz, L., Hudson, J. M. G., Huelber, K., Iturrate-Garcia, M., Iversen, C. M., Jaroszynska, F., Johnstone, J. F., Kaarlejärvi, E., Kulonen, A., Lamarque, L. J., Levesque, E., Little, C. J., Michelsen, A., Milbau, A., Nabe-Nielsen, J., Nielsen, S. S., Ninot, J. M., Oberbauer, S. F., Olofsson, J., Onipchenko, V. G., Petraglia, A., Rumpf, S. B., Semenchuk, P. R., Soudzilovskaia, N. A., Spasojevic, M. J., Speed, J. D. M., Tape, K. D., te Beest, M., Tomaselli, M., Trant, A., Treier, U. A., Venn, S., Vowles, T., Weijers, S., Zamin, T., Atkin, O. K., Bahn, M., Blonder, B., Campetella, G., Cerabolini, B. E. L., Chapin, F. S., Dainese, M., de Vries, F. T., Diaz, S., Green, W., Jackson, R. B., Manning, P., Niinemets, U., Ozinga, W. A., Penuelas, J., Reich, P. B., Schamp, B., Sheremetev, S. & van Bodegom, P. M., Jan 2019, In : Global Ecology and Biogeography. 28, 2, p. 78-95 18 p.

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2018

Animal Sound Identifier (ASI): software for automated identification of vocal animals

Ovaskainen, O., de Camargo, U. M. & Somervuo, P., Aug 2018, In : Ecology Letters. 21, 8, p. 1244-1254 11 p.

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A plant pathogen modulates the effects of secondary metabolites on the performance and immune function of an insect herbivore

Rosa, E., Woestmann, L., Biere, A. & Saastamoinen, M., Oct 2018, In : Oikos. 127, 10, p. 1539-1549 11 p.

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Assessing the dynamics of natural populations by fitting individual-based models with approximate Bayesian computation

Siren, J., Lens, L., Cousseau, L. & Ovaskainen, O., May 2018, In : Methods in Ecology and Evolution. 9, 5, p. 1286-1295 10 p.

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At which spatial and temporal scales can fungi indicate habitat connectivity?

Nordén, J., Åström, J., Josefsson, T., Blumentrath, S., Ovaskainen, O., Sverdrup-Thygeson, A. & Nordén, B., Aug 2018, In : Ecological Indicators. 91, p. 138-148 11 p.

Research output: Contribution to journalArticleScientificpeer-review

BARCOSEL: a tool for selecting an optimal barcode set for high-throughput sequencing

Somervuo, P., Koskinen, P., Mei, P., Holm, L., Auvinen, P. & Paulin, L., 5 Jul 2018, In : BMC Bioinformatics. 19, 257, 6 p., 257.

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Between-year changes in community composition shape species' roles in an Arctic plant-pollinator network

Cirtwill, A. R., Roslin, T., Rasmussen, C., Olesen, J. M. & Stouffer, D. B., Aug 2018, In : Oikos. 127, 8, p. 1163-1176 14 p.

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Biodiversity trends are stronger in marine than terrestrial assemblages

Blowes, S., Supp, S., Antao, L. I. H., Bates, A. E., Bruelheide, H., Chase, J. M., Moyes, F., Magurran, A. E., McGill, B., Myers-Smith, I. H., Winter, M., Bjorkman, A., Bowler, D., Byrnes, J., Gonzalez, A., Hines, J., Isbell, F., Jones, H. P., Navarro, L., Thompson, P. & 3 othersVellend, M., Waldock, C. & Dornelas, M., 30 Oct 2018, (Submitted) In : bioRxiv : the preprint server for biology . 457424

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BioTIME: A database of biodiversity time series for the Anthropocene

Dornelas, M., Antao, L. I. H., Moyes, F., Bates, A. E., Magurran, A. E. & Consortium, BIME., 2018, In : Global Ecology and Biogeography. 27, 7, p. 760-786 27 p.

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Contemporary pollen flow as a multiscale process: Evidence from the insect-pollinated herb, Pulsatilla vulgaris

DiLeo, M. F., Holderegger, R. & Wagner, H. H., Nov 2018, In : Journal of Ecology. 106, 6, p. 2242-2255 14 p.

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Direct and indirect effects of a pH gradient bring insights into the mechanisms driving prokaryotic community structures

Lammel, D. R., Barth, G., Ovaskainen, O., Cruz, L. M., Zanatta, J. A., Ryo, M., de Souza, E. M. & Pedrosa, F. O., 11 Jun 2018, In : Microbiome. 6, 106, 13 p.

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Do plant-based biogeographical regions shape aphyllophoroid fungal communities in Europe?

Ordynets, A., Heilmann-Clausen, J., Savchenko, A., Baessler, C., Volobuev, S., Akulov, O., Karadelev, M., Kotiranta, H., Saitta, A., Langer, E. & Abrego, N., May 2018, In : Journal of Biogeography. 45, 5, p. 1182-1195 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Effect of spatial connectivity on host resistance in a highly fragmented natural pathosystem

Höckerstedt, L. M., Siren, J. P. & Laine, A-L., Jun 2018, In : Journal of Evolutionary Biology. 31, 6, p. 844-852 9 p.

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Environmental and genetic control of cold tolerance in the Glanville fritillary butterfly

de Jong, M. A. & Saastamoinen, M., May 2018, In : Journal of Evolutionary Biology. 31, 5, p. 636-645 10 p.

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Estimating seed and pollen dispersal kernels from genetic data demonstrates a high pollen dispersal capacity for an endangered palm species

dos Santos, J., Varassin, I. G., Muschner, V. C. & Ovaskainen, O., Nov 2018, In : American Journal of Botany. 105, 11, p. 1802-1812 11 p.

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Estimating the acute impacts of Arctic marine oil spills using expert elicitation

Nevalainen, M., Helle, I. & Vanhatalo, J., Jun 2018, In : Marine Pollution Bulletin. 131, p. 782-792 11 p.

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Frontiers in Metapopulation Biology: The Legacy of Ilkka Hanski

Ovaskainen, O. T. & Saastamoinen, M. A. K., 2018, In : Annual Review of Ecology, Evolution and Systematics. 49, p. 231-252 22 p.

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Gauging support for macroecological patterns in helminth parasites

Dallas, T. A., Aguirre, A. A., Budischak, S., Carlson, C., Ezenwa, V., Han, B., Huang, S. & Stephens, P. R., Dec 2018, In : Global Ecology and Biogeography. 27, 12, p. 1437-1447 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Give me a sample of air and I will tell which species are found from your region: Molecular identification of fungi from airborne spore samples

Abrego, N., Norros, V., Halme, P., Somervuo, P., Ali-Kovero, H. & Ovaskainen, O., May 2018, In : Molecular Ecology Resources. 18, 3, p. 511-524 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Global predation pressure redistribution under future climate change

Romero, G. Q., Goncalves-Souza, T., Kratina, P., Marino, N. A. C., Petry, W. K., Sobral-Souza, T. & Roslin, T., Dec 2018, In : Nature Climate Change. 8, 12, p. 1087-1091 5 p.

Research output: Contribution to journalArticleScientificpeer-review

Habitat quality is more important than matrix quality for bird communities in protected areas

Hakkila, M., Abrego, N., Ovaskainen, O. & Monkkonen, M., Apr 2018, In : Ecology and Evolution. 8, 8, p. 4019-4030 12 p.

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