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2020

Genome-wide association meta-analysis of nicotine metabolism and cigarette consumption measures in smokers of European descent

Buchwald, J., Chenoweth, M. J., Palviainen, T., Zhu, G., Benner, C., Gordon, S., Korhonen, T., Ripatti, S., Madden, P. A. F., Lehtimaki, T., Raitakari, O. T., Salomaa, V., Rose, R. J., George, T. P., Lerman, C., Pirinen, M., Martin, N. G., Kaprio, J., Loukola, A. & Tyndale, R. F., 10 Mar 2020, In : Molecular Psychiatry. 12 p.

Research output: Contribution to journalArticleScientificpeer-review

2019

Bayesian meta-analysis across genome-wide association studies of diverse phenotypes

Trochet, H., Pirinen, M., Band, G., Jostins, L., McVean, G. & Spencer, C. C. A., Jul 2019, In : Genetic Epidemiology. 43, 5, p. 532-547 16 p.

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Contribution of rare and common variants to intellectual disability in a sub-isolate of Northern Finland

Kurki, M. I., Saarentaus, E. C., Pietiläinen, O., Gormley, P., Lal, D., Kerminen, S., Torniainen-Holm, M., Hämäläinen, E., Rahikkala, E., Keski-Filppula, R., Rauhala, M., Korpi-Heikkila, S., Komulainen-Ebrahim, J., Helander, H., Vieira, P., Männikkö, M., Peltonen, M., Havulinna, A., Salomaa, V., Pirinen, M. & 6 others, Suvisaari, J., Moilanen, J. S., Körkkö, J., Kuismin, O., Daly, M. & Palotie, A., 24 Jan 2019, In : Nature Communications. 10, 1, 15 p., 410.

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Coronary Artery Disease Risk and Lipidomic Profiles Are Similar in Hyperlipidemias With Family History and Population-Ascertained Hyperlipidemias

Ramo, J. T., Ripatti, P., Tabassum, R., Soderlund, S., Matikainen, N., Gerl, M. J., Klose, C., Surma, M. A., Stitziel, N. O., Havulinna, A. S., Pirinen, M., Salomaa, V., Freimer, N. B., Jauhiainen, M., Palotie, A., Taskinen, M-R., Simons, K. & Ripatti, S., 2 Jul 2019, In : Journal of the American Heart Association. 8, 13, 38 p., 012415.

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Exome sequencing of Finnish isolates enhances rare-variant association power

FinnGen Project, Locke, A. E., Havulinna, A. S., Pirinen, M., Eriksson, J. G., Ala-Korpela, M., Järvelin, M-R., Männikkö, M., Laivuori, H., Palotie, A., Salomaa, V., Laakso, M. & Ripatti, S., 15 Aug 2019, In : Nature. 572, 7769, p. 323–+ 21 p.

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Geographic Variation and Bias in the Polygenic Scores of Complex Diseases and Traits in Finland

Kerminen, S., Martin, A. R., Koskela, J., Ruotsalainen, S. E., Havulinna, A. S., Surakka, I., Palotie, A., Perola, M., Salomaa, V., Daly, M. J., Ripatti, S. & Pirinen, M., 6 Jun 2019, In : American Journal of Human Genetics. 104, 6, p. 1169-1181 13 p.

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Healthcare costs and outcomes in adult patients with juvenile idiopathic arthritis: a population-based study

Mars, N. J., Kerola, A. M., Kauppi, M. J., Pirinen, M., Elonheimo, O. & Sokka-Isler, T., 4 Mar 2019, In : Scandinavian Journal of Rheumatology. 48, 2, p. 114-120 7 p.

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Hemap: An Interactive Online Resource for Characterizing Molecular Phenotypes across Hematologic Malignancies

Pölönen, P., Mehtonen, J., Lin, J., Liuksiala, T., Häyrynen, S., Teppo, S., Mäkinen, A., Kumar, A., Malani, D., Pohjolainen, V., Porkka, K., Heckman, C. A., May, P., Hautamäki, V., Granberg, K. J., Lohi, O., Nykter, M. & Heinäniemi, M., 15 May 2019, In : Cancer Research. 79, 10, p. 2466-2479 14 p.

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Interrogation of human hematopoiesis at single-cell and single-variant resolution

Ulirsch, J. C., Lareau, C. A., Bao, E. L., Ludwig, L. S., Guo, M. H., Benner, C., Satpathy, A. T., Kartha, V. K., Salem, R. M., Hirschhorn, J. N., Finucane, H. K., Aryee, M. J., Buenrostro, J. D. & Sankaran, V. G., Apr 2019, In : Nature Genetics. 51, 4, p. 683-+ 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Metagenomics of the faecal virome indicate a cumulative effect of enterovirus and gluten amount on the risk of coeliac disease autoimmunity in genetically at risk children: the TEDDY study

Lindfors, K., Lin, J., Hyöty, H., Lee, H-S. & Agardh, D., 19 Nov 2019, In : Gut. p. 1-7 7 p.

Research output: Contribution to journalArticleScientificpeer-review

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Patients with rheumatic diseases share similar patterns of healthcare resource utilization

Mars, NJ., Kerola, AM., Kauppi, MJ., Pirinen, M., Elonheimo, O. & Sokka-Isler, T., 4 Jul 2019, In : Scandinavian Journal of Rheumatology. 48, 4, p. 300-307 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Variation in neurosurgical management of traumatic brain injury: a survey in 68 centers participating in the CENTER-TBI study

van Essen, T. A., den Boogert, H. F., Cnossen, M. C., CENTER-TBI Investigators Partici, Kaukonen, M., Kivisaari, R., Piippo-Karjalainen, A., Raj, R., Tanskanen, P., Palotie, A., Pirinen, M. & Ripatti, S., Mar 2019, In : Acta Neurochirurgica. 161, 3, p. 435-449 15 p.

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2018

Genomic Dissection of Bipolar Disorder and Schizophrenia, Including 28 Subphenotypes

Psychiat Genomics Consortium, Psychiat Genomics Consortium, Psychosis Endophenotypes Inter, Wellcome Trust Case Control, Ruderfer, D. M., Daly, M. J., Eriksson, J., Karjalainen, J., Lonnqvist, J., Meier, S., Neale, B. M., Palotie, A., Paunio, T., Pietilainen, O., Pirinen, M., Rautanen, A. & Suvisaari, J., 14 Jun 2018, In : Cell. 173, 7, p. 1705–1715.e1–e12 27 p., ARTN 1715.e16.

Research output: Contribution to journalArticleScientificpeer-review

GPrank: an R package for detecting dynamic elements from genome-wide time series

Topa, H. & Honkela, A., 4 Oct 2018, In : BMC Bioinformatics. 19, 6 p., 367.

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Haplotype Sharing Provides Insights into Fine-Scale Population History and Disease in Finland

Martin, A. R., Karczewski, K. J., Kerminen, S., Kurki, M. I., Sarin, A-P., Artomov, M., Eriksson, J. G., Esko, T., Genovese, G., Havulinna, A. S., Kaprio, J., Konradi, A., Korányi, L., Kostareva, A., Männikkö, M., Metspalu, A., Perola, M., Prasad, R. B., Raitakari, O., Rotar, O. & 7 others, Salomaa, V., Groop, L., Palotie, A., Neale, B. M., Ripatti, S., Pirinen, M. & Daly, M. J., 3 May 2018, In : American Journal of Human Genetics. 102, 5, p. 760-775 16 p.

Research output: Contribution to journalArticleScientificpeer-review

Insights into the genetic epidemiology of Crohn's and rare diseases in the Ashkenazi Jewish population

Int IBD Genetics Consortium, NIDDK IBD Genetics Consortium, T2D-Genes Consortium, Rivas, M. A., Koskela, J., Pirinen, M., Kurki, M., Saavalainen, P., Farkkila, M., Kontula, K., Palotie, A. & Daly, M. J., May 2018, In : PLoS Genetics. 14, 5, 25 p., 1007329.

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Non-operative meningiomas: long-term follow-up of 136 patients

Romani, R., Ryan, G., Benner, C. & Pollock, J., Aug 2018, In : Acta Neurochirurgica. 160, 8, p. 1547-1553 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Risk of nontyphoidal Salmonella bacteraemia in African children is modified by STAT4

Gilchrist, J. J., Rautanen, A., Fairfax, B. P., Mills, T. C., Naranbhai, V., Trochet, H., Pirinen, M., Muthumbi, E., Mwarumba, S., Njuguna, P., Mturi, N., Msefula, C. L., Gondwe, E. N., MacLennan, J. M., Chapman, S. J., Molyneux, M. E., Knight, J. C., Spencer, C. C. A., Williams, T. N., MacLennan, C. A. & 2 others, Scott, J. A. G. & Hill, A. V. S., 9 Mar 2018, In : Nature Communications. 9, 11 p., 1014.

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Tumour budding in oral squamous cell carcinoma: a meta-analysis

Almangush, A., Pirinen, M., Heikkinen, I., Mäkitie, A. A., Salo, T. & Leivo, I., 20 Feb 2018, In : British Journal of Cancer. 118, 4, p. 577-586 10 p.

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2017

biMM: efficient estimation of genetic variances and covariances for cohorts with high-dimensional phenotype measurements

Pirinen, M., Benner, C., Marttinen, P., Jarvelin, M-R., Rivas, M. A. & Ripatti, S., 1 Aug 2017, In : Bioinformatics. 33, 15, p. 2405-2407 3 p.

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Fine-Scale Genetic Structure in Finland

Kerminen, S., Havulinna, A. S., Hellenthal, G., Martin, A. R., Sarin, A-P., Perola, M., Palotie, A., Salomaa, V., Daly, M. J., Ripatti, S. & Pirinen, M., Oct 2017, In : G3 - Genes genomes genetics. 7, 10, p. 3459-3468 10 p.

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Prospects of Fine-Mapping Trait-Associated Genomic Regions by Using Summary Statistics from Genome-wide Association Studies

Benner, C., Havulinna, A. S., Järvelin, M-R., Salomaa, V., Ripatti, S. & Pirinen, M., 5 Oct 2017, In : American Journal of Human Genetics. 101, 4, p. 539-551 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Variation in monitoring and treatment policies for intracranial hypertension in traumatic brain injury: a survey in 66 neurotrauma centers participating in the CENTER-TBI study

Cnossen, M. C., Huijben, J. A., van der Jagt, M., Volovici, V., van Essen, T., Polinder, S., Nelson, D., Ercole, A., Stocchetti, N., Citerio, G., Peul, W. C., Maas, A. I. R., Menon, D., Steyerberg, E. W., Lingsma, H. F., CENTER-TBI Investigators, Palotie, A., Pirinen, M., Raj, R. & Ripatti, S., 6 Sep 2017, In : Critical Care. 21, 12 p., 233.

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Whole-genome view of the consequences of a population bottleneck using 2926 genome sequences from Finland and United Kingdom

Chheda, H., Palta, P., Pirinen, M., McCarthy, S., Walter, K., Koskinen, S., Salomaa, V., Daly, M., Durbin, R., Palotie, A., Aittokallio, T., Ripatti, S. & Sequencing Initiative Suomi SISu P, Apr 2017, In : European Journal of Human Genetics. 25, 4, p. 477-484 8 p.

Research output: Contribution to journalArticleScientificpeer-review

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2016

Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis

Sieberts, S. K., Zhu, F., Garcia-Garcia, J., Stahl, E., Pratap, A., Pandey, G., Pappas, D., Aguilar, D., Anton, B., Bonet, J., Eksi, R., Fornes, O., Guney, E., Li, H., Marin, M. A., Panwar, B., Planas-Iglesias, J., Poglayen, D., Cui, J., Falcao, A. O. & 31 others, Suver, C., Hoff, B., Balagurusamy, V. S. K., Dillenberger, D., Neto, E. C., Norman, T., Aittokallio, T., Ammad-ud-din, M., Azencott, C-A., Bellon, V., Boeva, V., Bunte, K., Chheda, H., Cheng, L., Corander, J., Dumontier, M., Goldenberg, A., Gopalacharyulu, P., Hajiloo, M., Hidru, D., Jaiswal, A., Kaski, S., Khalfaoui, B., Khan, S. A., Kramer, E. R., Marttinen, P., Pirinen, M., Saarela, J., Tang, J., Wennerberg, K. & Rheumatoid Arth Challenge, Aug 2016, In : Nature Communications. 7, 9 p., 12460.

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FINEMAP: efficient variable selection using summary data from genome-wide association studies

Benner, C., Spencer, C. C. A., Havulinna, A. S., Salomaa, V., Ripatti, S. & Pirinen, M., 15 May 2016, In : Bioinformatics. 32, 10, p. 1493-1501 9 p.

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Genetic support for the causal role of insulin in coronary heart disease

Tikkanen, E., Pirinen, M., Sarin, A-P., Havulinna, A. S., Mannisto, S., Saltevo, J., Lokki, M-L., Sinisalo, J., Lundqvist, A., Jula, A., Salomaa, V. & Ripatti, S., 2016, In : Diabetologia. 59, 11, p. 2369-2377 9 p.

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Genome-Wide Meta-Analysis of Sciatica in Finnish Population

Lemmelä, S., Solovieva, S., Shiri, R., Benner, C., Heliovaara, M., Kettunen, J., Anttila, V., Ripatti, S., Perola, M., Seppala, I., Juonala, M., Kahonen, M., Salomaa, V., Viikari, J., Raitakari, O. T., Lehtimaki, T., Palotie, A., Viikari-Juntura, E. & Husgafvel-Pursiainen, K., 20 Oct 2016, In : PLoS One. 11, 10, 18 p., 0163877.

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Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA

Kettunen, J., Demirkan, A., Wurtz, P., Draisma, H. H. M., Haller, T., Rawal, R., Vaarhorst, A., Kangas, A. J., Lyytikäinen, L-P., Pirinen, M., Pool, R., Sarin, A-P., Soininen, P., Tukiainen, T., Wang, Q., Tiainen, M., Tynkkynen, T., Amin, N., Zeller, T., Beekman, M. & 30 others, Deelen, J., van Dijk, K. W., Esko, T., Hottenga, J-J., van Leeuwen, E. M., Lehtimaki, T., Mihailov, E., Rose, R. J., de Craen, A. J. M., Gieger, C., Kahonen, M., Perola, M., Blankenberg, S., Savolainen, M. J., Verhoeven, A., Viikari, J., Willemsen, G., Boomsma, D. I., van Duijn, C. M., Eriksson, J., Jula, A., Jarvelin, M-R., Kaprio, J., Metspalu, A., Raitakari, O., Salomaa, V., Slagboom, P. E., Waldenberger, M., Ripatti, S. & Ala-Korpela, M., Mar 2016, In : Nature Communications. 7, 9 p., 11122.

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metaCCA: summary statistics-based multivariate meta-analysis of genome-wide association studies using canonical correlation analysis

Cichonska, A., Rousu, J., Marttinen, P., Kangas, A. J., Soininen, P., Lehtimaki, T., Raitakari, O. T., Jarvelin, M-R., Salomaa, V., Ala-Korpela, M., Ripatti, S. & Pirinen, M., 1 Jul 2016, In : Bioinformatics. 32, 13, p. 1981-1989 9 p.

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Multiple Output Regression with Latent Noise

Gillberg, J., Marttinen, P., Pirinen, M., Kangas, A. J., Soininen, P., Ali, M., Havulinna, A. S., Järvelin, M-R., Ala-Korpela, M. & Kaski, S., 1 Jan 2016, In : Journal of Machine Learning Research. 17, 1, p. 4170-4204 35 p.

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The Contribution of GWAS Loci in Familial Dyslipidemias

Ripatti, P., Ramo, J. T., Soderlund, S., Surakka, I., Matikainen, N., Pirinen, M., Pajukanta, P., Sarin, A-P., Service, S. K., Laurila, P-P., Ehnholm, C., Salomaa, V., Wilson, R. K., Palotie, A., Freimer, N. B., Taskinen, M-R. & Ripatti, S., May 2016, In : PLoS Genetics. 12, 5, 14 p., 1006078.

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2015

Genetic Variants on Chromosome 1p13.3 Are Associated with Non-ST Elevation Myocardial Infarction and the Expression of DRAM2 in the Finnish Population

Salo, P. P., Vaara, S., Kettunen, J., Pirinen, M., Sarin, A-P., Huikuri, H., Karhunen, P. J., Eskola, M., Nikus, K., Lokki, M-L., Ripatti, S., Havulinna, A. S., Salomaa, V., Palotie, A., Nieminen, M. S., Sinisalo, J. & Perola, M., 28 Oct 2015, In : PLoS One. 10, 10, 16 p., 0140576.

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Genome-Wide Analysis of Evolutionary Markers of Human Influenza A(H1N1)pdm09 and A(H3N2) Viruses May Guide Selection of Vaccine Strain Candidates

Belanov, S. S., Bychkov, D., Benner, C., Ripatti, S., Ojala, T., Kankainen, M., Lee, H. K., Tang, J. W-T. & Kainov, D. E., Dec 2015, In : Genome Biology and Evolution. 7, 12, p. 3472-3483 12 p.

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