Viikki Plant Science Centre (ViPS)

Publications

Research Output per year

1990 2021

• 1278 Article
• 105 Chapter
• 102 Conference contribution
• 66 Review Article
• 184 More
  • 35 Book
  • 24 Conference article
  • 22 Poster
  • 20 Doctoral Thesis
  • 16 Editorial
  • 12 Abstract
  • 12 Digital or Visual Products
  • 12 Software
  • 6 Anthology or special issue
  • 6 Commissioned report
  • 4 Letter
  • 4 Other contribution
  • 2 Paper
  • 2 Book/Film/Article review
  • 2 Comment/debate
  • 2 Web publication/site
  • 1 Entry for encyclopedia / dictionary
  • 1 Meeting Abstract
  • 1 Working paper

Research Output per year

Research Output per year

Search results

• 2020

  Antibiotic resistome in the livestock and aquaculture industries: Status and solutions

  Zhao, Y., Yang, Q. E., Zhou, X., Wang, F-H., Muurinen, J., Virta, M. P., Brandt, K. K. & Zhu, Y-G., 15 Jun 2020, In : Critical Reviews in Environmental Science & Technology. 38 p.

  Research output: Contribution to journal › Review Article › peer-review

• A roadmap for research in octoploid strawberry

  Whitaker, V. M., Knapp, S. J., Hardigan, M. A., Edger, P. P., Slovin, J. P., Bassil, N. V., Hytönen, T., Mackenzie, K. K., Lee, S., Jung, S., Main, D., Barbey, C. R. & Verma, S., 15 Mar 2020, In : Horticulture Research. 7, 1, 17 p., 33.

  Research output: Contribution to journal › Review Article › peer-review

  Open Access

  File

• Control of Flowering and Runnering in Strawberry

  Hytönen, T. & Kurokura, T., 2020, In : Horticulture journal. 89, 2, p. 96-107 12 p.

  Research output: Contribution to journal › Review Article › peer-review

  Open Access

  File

• Mechanisms of Carbon Sequestration in Highly Organic Ecosystems – Importance of Chemical Ecology

  Adamczyk, B., Heinonsalo, J. & Simon, J., 14 Apr 2020, In : Chemistryopen. 9, 4, p. 464-469 6 p.

  Research output: Contribution to journal › Review Article › peer-review

  Open Access

  File

• Physiological and Biochemical Basis of Faba Bean Breeding for Drought Adaptation —A Review

  Muktadir, M. A., Adhikari, K. N., Merchant, A., Belachew, K., Vandenberg, A., Stoddard, F. & Khazaei, H., 7 Sep 2020, In : Agronomy. 10, 9, 19 p., 1345.

  Research output: Contribution to journal › Review Article › peer-review

  Open Access

  File

• Plant susceptibility genes as a source for potyvirus resistance.

  Mäkinen, K., Mar 2020, In : Annals of Applied Biology. 176, 2, p. 122-129 8 p.

  Research output: Contribution to journal › Review Article › peer-review

• Spreading of Trioza apicalis and development of "Candidatus Liberibacter solanacearum" infection on carrot in the field conditions

  Nissinen, A., Haapalainen, M., Ojanen, H., Pirhonen, M. & Jauhiainen, L., 22 Sep 2020, In : Annals of Applied Biology. 12 p.

  Research output: Contribution to journal › Review Article › peer-review

  Open Access

• Unsupervised Learning and Multipartite Network Models: A Promising Approach for Understanding Traditional Medicine

  Jafari, M., Wang, Y., Amiryousefi, A. & Tang, J., 26 Aug 2020, In : Frontiers in Pharmacology. 11, 10 p., 1319.

  Research output: Contribution to journal › Review Article › peer-review

  Open Access

  File
• 2019

  Delta TraitSDMs: species distribution models that account for local adaptation and phenotypic plasticity

  Garzon, M. B., Robson, T. M. & Hampe, A., Jun 2019, In : New Phytologist. 222, 4, p. 1757-1765 9 p.

  Research output: Contribution to journal › Review Article › peer-review

  Open Access

  File

• Drought impacts on tree phloem: from cell-level responses to ecological significance

  Salmon, Y., Dietrich, L., Sevanto, S., Hölttä, T., Dannoura, M. & Epron, D., Feb 2019, In : Tree Physiology. 39, 2, p. 173-191 19 p.

  Research output: Contribution to journal › Review Article › peer-review

  Open Access

  File

• Eliminating vicine and convicine, the main anti-nutritional factors restricting faba bean usage

  Khazaei, H., Purves, R. W., Hughes, J., Link, W., O'Sullivan, D. M., Schulman, A. H., Bjornsdotter, E., Geu-Flores, F., Nadzieja, M., Andersen, S. U., Stougaard, J., Vandenberg, A. & Stoddard, F. L., Sep 2019, In : Trends in Food Science & Technology. 91, p. 549-556 8 p.

  Research output: Contribution to journal › Review Article › peer-review

  Open Access

  File

• Forest Tree Microbiomes and Associated Fungal Endophytes: Functional Roles and Impact on Forest Health

  Terhonen, E., Blumenstein, K., Kovalchuk, A. & Asiegbu, F. O., Jan 2019, In : Forests. 10, 1, 32 p., 42.

  Research output: Contribution to journal › Review Article › peer-review

  Open Access

  File

• Importance of Sequence and Timing in Parasite Coinfections

  Karvonen, A., Jokela, J. & Laine, A-L., Feb 2019, In : Trends in Parasitology. 35, 2, p. 109-118 10 p.

  Research output: Contribution to journal › Review Article › peer-review

• Methane emissions from tree stems: a new frontier in the global carbon cycle

  Barba, J., Bradford, M., Brewer, P., Bruhn, D., Covey, K., van Haren, J., Megonigal, P., Norgaard Mikkelsen, T., Pangala, S., Pihlatie, M. K., Poulter, B., Rivas-Ubach, A., Schadt, C., Terazawa, K., Warner, D., Chang, Z. & Vargas, R., Apr 2019, In : New Phytologist. 222, 1, p. 18-28 11 p.

  Research output: Contribution to journal › Review Article › peer-review

• Rapid Responses to Abiotic Stress: Priming the Landscape for the Signal Transduction Network

  Kollist, H., Zandalinas, S. I., Sengupta, S., Nuhkat, M., Kangasjarvi, J. & Mittler, R., Jan 2019, In : Trends in Plant Science. 24, 1, p. 25-37 13 p.

  Research output: Contribution to journal › Review Article › peer-review

  Open Access

  File

• Reactive Oxygen Species, Photosynthesis, and Environment in the Regulation of Stomata

  Ehonen, S., Yarmolinsky, D., Kollist, H. & Kangasjärvi, J., 1 Mar 2019, In : Antioxidants & Redox Signaling. 30, 9, p. 1220-1237 18 p.

  Research output: Contribution to journal › Review Article › peer-review

  Open Access

  File

• Sieve Plate Pores in the Phloem and the Unknowns of Their Formation

  Kalmbach, L. & Helariutta, Y. E., 22 Jan 2019, In : Plants. 8, 2, 13 p., 25.

  Research output: Contribution to journal › Review Article › peer-review

  Open Access

  File

• The Dynamics of Cambial Stem Cell Activity

  Fischer, U., Kucukoglu, M., Helariutta, Y. E. & Bhalerao, R. P., 29 Apr 2019, In : Annual Review of Plant Biology. 70, p. 293-319 27 p.

  Research output: Contribution to journal › Review Article › peer-review

• The influence of spectral composition on spring and autumn phenology in trees

  Brelsford, C., Nybakken, L., Kotilainen, T. K. & Robson, T. M., 17 May 2019, In : Tree Physiology. 39, 6, p. 925-950 26 p.

  Research output: Contribution to journal › Review Article › peer-review

  Open Access

  File

• The significance of methionine cycle enzymes in plant virus infections

  Mäkinen, K. M. & Swarnalok, D., Aug 2019, In : Current Opinion in Plant Biology. 50, p. 67-75 9 p.

  Research output: Contribution to journal › Review Article › peer-review

  Open Access

  File
• 2018

  A transnational and holistic breeding approach is needed for sustainable wheat production in the Baltic Sea region

  Chawade, A., Armoniene, R., Berg, G., Brazauskas, G., Frostgard, G., Geleta, M., Gorash, A., Henriksson, T., Himanen, K., Ingver, A., Johansson, E., Jorgensen, L. N., Koppel, M., Koppel, R., Makela, P., Ortiz, R., Podyma, W., Roitsch, T., Ronis, A., Svensson, J. T. & 2 others, Vallenback, P. & Weih, M., Dec 2018, In : Physiologia Plantarum. 164, 4, p. 442-451 10 p.

  Research output: Contribution to journal › Review Article › peer-review

  Open Access

  File

• Beavers affect carbon biogeochemistry: both short-term and long-term processes are involved.

  Nummi, P. J., Vehkaoja, M. C., Pumpanen, J. S. & Ojala, A. K., Oct 2018, In : Mammal Review. 48, 4, p. 298-311 14 p.

  Research output: Contribution to journal › Review Article › peer-review

• Flower heads in Asteraceae—recruitment of conserved developmental regulators to control the flower-like inflorescence architecture

  Elomaa, P. R., Zhao, Y. & Zhang, T., 1 Jul 2018, In : Horticulture Research. 5, 10 p., 36.

  Research output: Contribution to journal › Review Article › peer-review

  Open Access

  File

• ICOS eddy covariance flux-station site setup: a review

  Rebmann, C., Aubinet, M., Schmid, H., Arriga, N., Aurela, M., Burba, G., Clement, R., De Ligne, A., Fratini, G., Gielen, B., Grace, J., Graf, A., Gross, P., Haapanala, S., Herbst, M., Hortnagl, L., Ibrom, A., Joly, L., Kljun, N., Kolle, O. & 20 others, Kowalski, A., Lindroth, A., Loustau, D., Mammarella, I., Mauder, M., Merbold, L., Metzger, S., Molder, M., Montagnani, L., Papale, D., Pavelka, M., Peichl, M., Roland, M., Serrano-Ortiz, P., Siebicke, L., Steinbrecher, R., Tuovinen, J-P., Vesala, T., Wohlfahrt, G. & Franz, D., Dec 2018, In : International Agrophysics. 32, 4, p. 471-494 28 p.

  Research output: Contribution to journal › Review Article › peer-review

  Open Access

  File

• Nordic research infrastructures for plant phenotyping

  Alexandersson, E., Keinanen, M., Chawade, A. & Himanen, K., 2018, In : Agricultural and Food Science. 27, 1, p. 7-16 10 p.

  Research output: Contribution to journal › Review Article › peer-review

  Open Access

  File

• Phloem differentiation: an integrative model for cell specification

  Blob, B., Heo, J. & Helariutta, Y., Jan 2018, In : Journal of Plant Research. 131, 1, p. 31-36 6 p.

  Research output: Contribution to journal › Review Article › peer-review

  Open Access

  File

• Plant vascular tissues – connecting tissue comes in all shapes

  Hellmann, E., Ko, D., Ruonala, R. H. & Helariutta, Y. E., 13 Dec 2018, In : Plants. 7, 4

  Research output: Contribution to journal › Review Article › peer-review

  Open Access

  File

• Reactive Oxygen Species in Plant Signaling

  Waszczak, C., Carmody, M. & Kangasjarvi, J., Apr 2018, In : Annual Review of Plant Biology. 69, p. 209-236 28 p.

  Research output: Contribution to journal › Review Article › peer-review

• Reactive oxygen species signaling and stomatal movement in plant responses to drought stress and pathogen attack

  Qi, J., Song, C-P., Wang, B., Zhou, J., Kangasjarvi, J., Zhu, J-K. & Gong, Z., Sep 2018, In : Journal of Integrative Plant Biology. 60, 9, p. 805-826 22 p.

  Research output: Contribution to journal › Review Article › peer-review

  Open Access

• Reviews and syntheses: Carbonyl sulfide as a multi-scale tracer for carbon and water cycles

  Whelan, M. E., Lennartz, S. T., Gimeno, T. E., Wehr, R., Wohlfahrt, G., Wang, Y., Kooijmans, L. M. J., Hilton, T. W., Belviso, S., Peylin, P., Commane, R., Sun, W., Chen, H., Kuai, L., Mammarella, I., Maseyk, K., Berkelhammer, M., Li, K-F., Yakir, D., Zumkehr, A. & 22 others, Katayama, Y., Ogee, J., Spielmann, F. M., Kitz, F., Rastogi, B., Kesselmeier, J., Marshall, J., Erkkilä, K-M., Wingate, L., Meredith, L. K., He, W., Bunk, R., Launois, T., Vesala, T., Schmidt, J. A., Fichot, C. G., Seibt, U., Saleska, S., Saltzman, E. S., Montzka, S. A., Berry, J. A. & Campbell, J. E., 18 Jun 2018, In : Biogeosciences. 15, 12, p. 3625-3657 33 p.

  Research output: Contribution to journal › Review Article › peer-review

  Open Access

  File

• Rust resistance in faba bean (Vicia faba L.): status and strategies for improvement

  Ijaz, U., Adhikari, K. N., Stoddard, F. L. & Trethowan, R. M., Jan 2018, In : Australasian Plant Pathology. 47, 1, p. 71-81 11 p.

  Research output: Contribution to journal › Review Article › peer-review

  Open Access

  File

• The role of reactive oxygen species in the integration of temperature and light signals

  Krasensky-Wrzaczek, J. & Kangasjärvi, J. S., 22 Jun 2018, In : Journal of Experimental Botany. 69, 14, p. 3347–3358 12 p.

  Research output: Contribution to journal › Review Article › peer-review

  Open Access

• Towards long-term standardised carbon and greenhouse gas observations for monitoring Europe's terrestrial ecosystems: a review

  Franz, D., Acosta, M., Altimir, N., Arriga, N., Arrouays, D., Aubinet, M., Aurela, M., Ayres, E., Lopez-Ballesteros, A., Barbaste, M., Berveiller, D., Biraud, S., Boukir, H., Brown, T., Bruemmer, C., Buchmann, N., Burba, G., Carrara, A., Cescatti, A., Ceschia, E. & 103 others, Clement, R., Cremonese, E., Crill, P., Darenova, E., Dengel, S., D'Odorico, P., Filippa, G., Fleck, S., Fratini, G., Fuss, R., Gielen, B., Gogo, S., Grace, J., Graf, A., Grelle, A., Gross, P., Gruenwald, T., Haapanala, S., Hehn, M., Heinesch, B., Heiskanen, J., Herbst, M., Herschlein, C., Hortnagl, L., Hufkens, K., Ibrom, A., Jolivet, C., Joly, L., Jones, M., Kiese, R., Klemedtsson, L., Kljun, N., Klumpp, K., Kolari, P., Kolle, O., Kowalski, A., Kutsch, W., Laurila, T., de Ligne, A., Linder, S., Lindroth, A., Lohila, A., Longdoz, B., Mammarella, I., Manise, T., Maranon Jimenez, S., Matteucci, G., Mauder, M., Meier, P., Merbold, L., Mereu, S., Metzger, S., Migliavacca, M., Molder, M., Montagnani, L., Moureaux, C., Nelson, D., Nemitz, E., Nicolini, G., Nilsson, M. B., Op de Beeck, M., Osborne, B., Lofvenius, M. O., Pavelka, M., Peichl, M., Peltola, O., Pihlatie, M., Pitacco, A., Pokorny, R., Pumpanen, J., Ratie, C., Rebmann, C., Roland, M., Sabbatini, S., Saby, N. P. A., Saunders, M., Schmid, H. P., Schrumpf, M., Sedlak, P., Serrano Ortiz, P., Siebicke, L., Sigut, L., Silvennoinen, H., Simioni, G., Skiba, U., Sonnentag, O., Soudani, K., Soule, P., Steinbrecher, R., Tallec, T., Thimonier, A., Tuittila, E-S., Tuovinen, J-P., Vestin, P., Vincent, G., Vincke, C., Vitale, D., Waldner, P., Weslien, P., Wingate, L., Wohlfahrt, G., Zahniser, M. & Vesala, T., Dec 2018, In : International Agrophysics. 32, 4, p. 439-455 22 p.

  Research output: Contribution to journal › Review Article › peer-review

  Open Access

  File
• 2017

  Antibiotic resistance in the wild: an eco-evolutionary perspective

  Hiltunen, T., Virta, M. & Laine, A-L., 19 Jan 2017, In : Philosophical Transactions of the Royal Society. Biological Sciences. 372, 1712, 7 p., 20160039.

  Research output: Contribution to journal › Review Article › peer-review

  Open Access

  File

• Companion cells: a diamond in the rough

  Otero, S. & Helariutta, Y., Jan 2017, In : Journal of Experimental Botany. 68, 1, p. 71-78 8 p.

  Research output: Contribution to journal › Review Article › peer-review

  Open Access

• Differentiation of conductive cells: a matter of life and death

  Heo, J-O., Blob, B. & Helariutta, Y., Feb 2017, In : Current Opinion in Plant Biology. 35, p. 23-29 7 p.

  Research output: Contribution to journal › Review Article › peer-review

• Plant RNA Regulatory Network and RNA Granules in Virus Infection

  Makinen, K., Lohmus, A. & Pollari, M., 11 Dec 2017, In : Frontiers in plant science. 8, 15 p., 2093.

  Research output: Contribution to journal › Review Article › peer-review

  Open Access

  File

• Shoot-Root Communication in Flowering Plants

  Ko, D. & Helariutta, Y., 11 Sep 2017, In : Current Biology. 27, 17, p. R973-R978 6 p.

  Research output: Contribution to journal › Review Article › peer-review

  Open Access

• Synergistic use of peat and charred material in growing media – an option to reduce the pressure on peatlands?

  Kern, J., Tammeorg, P., Shanskiy, M., Sakrabani, R., Knicker, H., Kammann, C., Tuhkanen, E-M., Smidt, G., Prasad, M., Tiilikkala, K., Sohi, S., Gasco, G., Steiner, C. & Glaser, B., 28 Jun 2017, In : Journal of Environmental Engineering and Landscape Management. 25, 2, p. 160-174 16 p.

  Research output: Contribution to journal › Review Article › peer-review

  Open Access

  File

• Theoretical approaches to understanding root vascular patterning: a consensus between recent models

  Mellor, N., Adibi, M., El-Showk, S., De Rybel, B., King, J., Mahonen, A. P., Weijers, D. & Bishopp, A., Jan 2017, In : Journal of Experimental Botany. 68, 1, p. 5-16 12 p.

  Research output: Contribution to journal › Review Article › peer-review

  Open Access
• 2016

  Grain legume decline and potential recovery in European agriculture: a review

  Zander, P., Amjath-Babu, T. S., Preissel, S., Reckling, M., Bues, A., Schlaefke, N., Kuhlman, T., Bachinger, J., Uthes, S., Stoddard, F., Murphy-Bokern, D. & Watson, C., Jun 2016, In : Agronomy for Sustainable Development. 36, 2, 20 p., 26.

  Research output: Contribution to journal › Review Article › peer-review

  Open Access

• Infectious Disease Dynamics in Heterogeneous Landscapes

  Parratt, S. R., Numminen, S. E. & Laine, A-L., 2016, In : Annual Review of Ecology, Evolution and Systematics. 47

  Research output: Contribution to journal › Review Article › peer-review

• Pan-Eurasian Experiment (PEEX): towards a holistic understanding of the feedbacks and interactions in the land–atmosphere–ocean–society continuum in the northern Eurasian region

  Lappalainen, H. K., Kerminen, V-M., Petäjä, T., Kurten, T., Baklanov, A., Bäck, J., Vihma, T., Arnold, S. R., Janhunen, J., Juhola, S., Järvi, L., Järvinen, H., Kieloaho, A-J., Kujansuu, J., Kukkonen, I., Duplissy, E-M., Laaksonen, A., Laurila, T., Lihavainen, H., Mazon, S. & 11 others, Moiseev, D., Ojala, A., Pihlatie, M., Pumpanen, J., Sipilä, M., Tynkkynen, V-P., Viisanen, Y., Vesala, T., Hari, P., Zilitinkevich, S. & Kulmala, M., 22 Nov 2016, In : Atmospheric Chemistry and Physics. 16, 22, p. 14421-14461 41 p.

  Research output: Contribution to journal › Review Article › peer-review

  Open Access

  File

• Plant PARPs, PARGs and PARP-like Proteins

  Vainonen, J. P., Shapiguzov, A., Vaattovaara, A. & Kangasjarvi, J., 2016, In : Current Protein and Peptide Science. 17, 7, p. 713-723 11 p.

  Research output: Contribution to journal › Review Article › peer-review

• Plant vascular development: from early specification to differentiation

  De Rybel, B., Mähonen, A. P., Helariutta, Y. & Weijers, D., Jan 2016, In : Nature Reviews. Molecular Cell Biology. 17, 1, 11 p.

  Research output: Contribution to journal › Review Article › peer-review

• Protein Phosphatase 2A in the Regulatory Network Underlying Biotic Stress Resistance in Plants

  Durian, G., Rahikainen, M., Alegre, S., Brosche, M. & Kangasjarvi, S., 10 Jun 2016, In : Frontiers in plant science. 7, 17 p., 812.

  Research output: Contribution to journal › Review Article › peer-review

  Open Access

  File

• ROS signalling in a destabilised world: A molecular understanding of climate change

  Carmody, M., Waszczak, C., Idänheimo, N., Saarinen, T. & Kangasjarvi, J., 20 Sep 2016, In : Journal of Plant Physiology. 203, p. 80-94 15 p.

  Research output: Contribution to journal › Review Article › peer-review

• Understanding the ecology and evolution of host-parasite interactions across scales

  Penczykowski, R. M., Laine, A-L. & Koskella, B., Jan 2016, In : Evolutionary Applications. 9, 1, p. 37-52 16 p.

  Research output: Contribution to journal › Review Article › peer-review

  Open Access

  File
• 2015

  Abscisic Acid Transport and Homeostasis in the Context of Stomatal Regulation

  Merilo, E., Jalakas, P., Laanemets, K., Safronov, O., Hõrak, H., Kollist, H. & Brosche, M., 7 Sep 2015, In : Molecular Plant. 8, 9, p. 1321-1333 13 p.

  Research output: Contribution to journal › Review Article › peer-review

• Assessing the response of plant flavonoids to UV radiation: an overview of appropriate techniques

  Julkunen-Tiitto, R., Nenadis, N., Neugart, S., Robson, M., Agati, G., Vepsalainen, J., Zipoli, G., Nybakken, L., Winkler, B. & Jansen, M. A. K., Apr 2015, In : Phytochemistry Reviews. 14, 2, p. 273-297 25 p.

  Research output: Contribution to journal › Review Article › peer-review