Research output per year
Research output per year
Personal profile
Fields of Science
- 113 Computer and information sciences
International and National Collaboration
Publications and projects within past five years.
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Distributed hybrid-indexing of compressed pan-genomes for scalable and fast sequence alignment
Maarala, A. I., Arasalo, O., Valenzuela, D., Mäkinen, V. & Heljanko, K., 3 Aug 2021, In: PLoS One. 16, 8, 19 p., 0255260.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Scalable computational methods for high-throughput sequencing data analytics in population genomics
Maarala, A. I., 17 Dec 2021Research output: Thesis › Doctoral Thesis › Collection of Articles
Open Access -
Scalable Reference Genome Assembly from Compressed Pan-Genome Index with Spark
Maarala, A. I., Arasalo, O., Valenzuela, D., Heljanko, K. & Mäkinen, V., 18 Sept 2020, Big Data -- BigData 2020. Nepal, S., Cao, W., Nasridinov, A., Bhuiyan, MD. Z. A., Guo, X. & Zhang, L-J. (eds.). Cham: Springer International Publishing, p. 68-84 17 p. ( Lecture Notes in Computer Science ; vol. 12402).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review
Open AccessFile -
SparkBeagle: Scalable Genotype Imputation from Distributed Whole-Genome Reference Panels in the Cloud
Maarala, A. I., Pärn, K., Nunez Fontarnau, J. & Heljanko, K., Sept 2020, BCB '20: Proceedings of the 11th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics. ACM , 8 p. 97Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review
Open AccessFile -
ViraPipe: scalable parallel pipeline for viral metagenome analysis from next generation sequencing reads
Maarala, A. I., Bzhalava, Z., Dillner, J., Heljanko, K. & Bzhalava, D., 15 Mar 2018, In: Bioinformatics. 34, 6, p. 928-935 8 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access
Projects
- 1 Active
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iCAN - Digital precision cancer medicine for discoveries and improved treatments
Mäkelä, T., Adhikari, S., Aldahdooh, J. M. F., Ariotta, V., Arjama, M. A., Atarsaikhan, G., Bao, J., Barreiro, K., Bhalke, M. S., Bollepalli, S., Brandt, J. A. J., Chernenko, A., Dashi, G., Eloranta, K., Eriksson, M. R., Fey, E., Gerber, L. J., Grönholm, M., Hannula, S. A., Heistman, V., Henriksson, M. E. J., Hiitola, E. T. J., Huttunen, A. T., Hyyppä, S. P. P., Högel-Starck, C. S. P., Ikonen, N., Jansouz, S., Junquera Mencía, A., Kampanellou, E., Karabayev, D., Karhemo, P., Kekkonen, J., Kolikova, Y., Krami Senhaji, O., Kuisma-van der Linden, M. S., Kuosmanen, A., Kurki, V., Kuusela, S., Kücükel, H., Langohr, L., Le Joncour, V., Lehto, T., Leivonen, S., Liljeström, M., Lindfors, I. S., Lindgren, H., Luck, T. J., Lähdeniemi, I. A. K., Maarala, A. I., Maljanen, K. J., Marchi, G., Martikainen, E. M., Meriranta, L., Metsäranta, N. A. C., Miihkinen, M. S., Nader, K. M., Nagaraj, A., Nguyen, M., Niemeyer, F., Niemiec, I., Nylén, M. M., Palin, K., Palva, A., Parsons, A. O., Perez Villatoro, F. R., Pietiäinen, V., Pirinen, I. E., Pirttikoski, A. A., Pitko, I. M., Polianskyte-Prause, Z., Puhka, M., Quintero, I. B., Rachidi, S. E., Rajalaakso, M. T., Rodosthenous, R., Saad, J., Sanjaya, P., Seppälä, T. T., Seref Vujaklija, C., Shah, S., Sorri, S. P., Suni, V., Suutala, A., Suvela, M., Udayani, J. E., Verkasalo, H. M., Vilkkavaara Cancocak, Y., Vähärautio, A., Vänttinen, I. M., Västrik, I., Väänänen, J. & Wang, W.
Suomen Akatemia Projektilaskutus, Academy of Finland
01/09/2022 → 31/12/2026
Project: Research Council of Finland: Finnish Flagship Programme