Research output per year
Research output per year
Personal profile
Fields of Science
- 113 Computer and information sciences
International and National Collaboration
Publications and projects within past five years.
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Distributed hybrid-indexing of compressed pan-genomes for scalable and fast sequence alignment
Maarala, A. I., Arasalo, O., Valenzuela, D., Mäkinen, V. & Heljanko, K., 3 Aug 2021, In: PLoS One. 16, 8, 19 p., 0255260.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Scalable computational methods for high-throughput sequencing data analytics in population genomics
Maarala, A. I., 17 Dec 2021Research output: Thesis › Doctoral Thesis › Collection of Articles
Open Access -
Scalable Reference Genome Assembly from Compressed Pan-Genome Index with Spark
Maarala, A. I., Arasalo, O., Valenzuela, D., Heljanko, K. & Mäkinen, V., 18 Sep 2020, Big Data -- BigData 2020. Nepal, S., Cao, W., Nasridinov, A., Bhuiyan, MD. Z. A., Guo, X. & Zhang, L-J. (eds.). Cham: Springer International Publishing, p. 68-84 17 p. ( Lecture Notes in Computer Science ; vol. 12402).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review
Open AccessFile -
SparkBeagle: Scalable Genotype Imputation from Distributed Whole-Genome Reference Panels in the Cloud
Maarala, A. I., Pärn, K., Nunez Fontarnau, J. & Heljanko, K., Sep 2020, BCB '20: Proceedings of the 11th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics. ACM , 8 p. 97Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review
Open AccessFile -
ViraPipe: scalable parallel pipeline for viral metagenome analysis from next generation sequencing reads
Maarala, A. I., Bzhalava, Z., Dillner, J., Heljanko, K. & Bzhalava, D., 15 Mar 2018, In: Bioinformatics. 34, 6, p. 928-935 8 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access