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Personal profile

Fields of Science

  • 113 Computer and information sciences
  • Bioinformaticas, Systems biology

International and National Collaboration Publications and projects within past five years.

Publications 2014 2018

  • 4 Article
  • 1 Conference contribution
  • 1 Review Article

Learning with multiple pairwise kernels for drug bioactivity prediction

Cichonska, A., Pahikkala, T., Szedmak, S., Julkunen, H., Airola, A., Heinonen, M., Aittokallio, T. & Rousu, J., 1 Jul 2018, In : Bioinformatics. 34, 13, p. 509-518 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

Computational-experimental approach to drug-target interaction mapping: A case study on kinase inhibitors

Cichonska, A., Ravikumar, B., Parri, E., Timonen, S., Pahikkala, T., Airola, A., Wennerberg, K., Rousu, J. & Aittokallio, T., 7 Aug 2017, In : PLoS Computational Biology. 13, 8, 28 p., 1005678.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

metaCCA: summary statistics-based multivariate meta-analysis of genome-wide association studies using canonical correlation analysis

Cichonska, A., Rousu, J., Marttinen, P., Kangas, A. J., Soininen, P., Lehtimaki, T., Raitakari, O. T., Jarvelin, M-R., Salomaa, V., Ala-Korpela, M., Ripatti, S. & Pirinen, M., 1 Jul 2016, In : Bioinformatics. 32, 13, p. 1981-1989 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

Profiling persistent tubercule bacilli from patient sputa during therapy predicts early drug efficacy

Honeyborne, I., McHugh, T. D., Kuittinen, I., Cichonska, A., Evangelopoulos, D., Ronacher, K., van Helden, P. D., Gillespie, S. H., Fernandez-Reyes, D., Walzl, G., Rousu, J., Butcher, P. D. & Waddell, S. J., 7 Apr 2016, In : BMC Medicine. 14, 13 p., 68.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

Identification of drug candidates and repurposing opportunities through compound-target interaction networks

Cichonska, A., Rousu, J. & Aittokallio, T., 2 Dec 2015, In : Expert opinion on drug discovery. 10, 12, p. 1333-1345 13 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Open Access
File

Activities 2013 2018

  • 16 Organisation and participation in conferences, workshops, courses, seminars
  • 1 Supervisor or co-supervisor of doctoral thesis
  • 1 Academic visit to other institution

Machine Learning for Systems Pharmacology

Tero Aittokallio (Supervisor)
5 Oct 2018

Activity: Examination typesSupervisor or co-supervisor of doctoral thesis

Stanford University

Anna Cichonska (Visiting researcher)
21 Aug 20178 Sep 2017

Activity: Visiting an external institution typesAcademic visit to other institution

Summer School on Computational Drug Science

Anna Cichonska (Attendee)
9 Jul 201715 Jul 2017

Activity: Participating in or organising an event typesOrganisation and participation in conferences, workshops, courses, seminars

Target Validation Using Genomics and Informatics

Anna Cichonska (Poster Presentation)
4 Dec 20166 Dec 2016

Activity: Participating in or organising an event typesOrganisation and participation in conferences, workshops, courses, seminars

EMBL partnership conference: Perspectives in Translational Medicine

Anna Cichonska (Poster Presentation)
6 Jun 20168 Jun 2016

Activity: Participating in or organising an event typesOrganisation and participation in conferences, workshops, courses, seminars