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  • PL 56 (Viikinkaari 5)

    00014

    Finland

19972018

Research output per year

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Publications

2018
Open Access
File
2017

Competition between a toxic and a non-toxic Microcystis strain under constant and pulsed nitrogen and phosphorus supply

Suominen, S., Brauer, V. S., Rantala-Ylinen, A., Sivonen, K. & Hiltunen, T., Mar 2017, In : Aquatic Ecology. 51, 1, p. 117-130 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

Conventional PCR

Dittmann, E., Rantala-Ylinen, A., Sivonen, K., Gagala, I., Mankiewicz-Boczek, J., Gires, S., Ballot, A., Christiansen, G., Kurmayer, R., Ramos, V., Vasconcelos, V. & Saker, M., 2017, Molecular tools for the detection and quantification of toxigenic cyanobacteria. Kurmayer, R., Sivonen, K., Wilmotte, A. & Salmaso, N. (eds.). New York: Wiley, p. 163-203 40 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

DNA (Diagnostic) and cDNA microarray

Rantala-Ylinen, A. H., Sivonen, K. & Wilmotte, A., 2017, Molecular tools for the detection and quantification of toxigenic cyanobacteria. Kurmayer, R., Sivonen, K., Wilmotte, A. & Salamaso, N. (eds.). Wiley, p. 241-243 3 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Nucleic Acid Extraction

Dittmann, E., Rantala-Ylinen, A., Ramos, V., Vasconcelos, V., Christiansen, G. & Kurmayer, R., 2017, Molecular tools for the detection and quantification of toxigenic cyanobacteria. Kurmayer, R., Sivonen, K., Wilmotte, A. & Salmaso, N. (eds.). New York: Wiley, p. 135-139 5 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Quantitative PCR

Rantala-Ylinen, A. H., Savela, H., Sivonen, K. & Kurmayer, R., 2017, Molecular tools for the detection and quantification of toxigenic cyanobacteria. Kurmayer, R., Sivonen, K., Wilmotte, A. & Salmaso, N. (eds.). Wiley, p. 205-210 5 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

2015

Identification of geosmin and 2-methylisoborneol in cyanobacteria and molecular detection methods for the producers.

Suurnäkki, S., Gomes-Saez, G. V., Rantala-Ylinen, A., Jokela, J., Fewer, D. P. & Sivonen, K., 2015, In : Water Research. 68, p. 56-66 11 p.

Research output: Contribution to journalArticleScientificpeer-review

2012

Genome derived insights into the biology of the hepatotoxic bloom forming cyanobacterium Anabaena sp. strain 90

Wang, H., Sivonen, K., Rouhiainen, L. A. O., Fewer, D. P., Lyra, C., Rantala-Ylinen, A., Vestola, J., Jokela, J., Rantasärkkä, K., Li, Z. & Liu, B., 2012, In : BMC Genomics. 13, Article No.613, 17 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
2011

Anatoxin-a Synthetase Gene Cluster of the Cyanobacterium Anabaena sp Strain 37 and Molecular Methods To Detect Potential Producers

Rantala-Ylinen, A., Känä, S., Wang, H., Rouhiainen, L., Wahlsten, M., Rizzi, E., Berg, K., Gugger, M. & Sivonen, K., 2011, In : Applied and Environmental Microbiology. 77, p. 7271-7278 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Bacterioplankton community composition in 67 Finnish lakes differs according to trophic status

Kolmonen, E. K., Haukka, K., Rantala-Ylinen, A., Rajaniemi-Wacklin, P., Lepistö, L. & Sivonen, K., 2011, In : Aquatic Microbial Ecology. 62, 3, p. 241-250 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Molecular methods: chip assay and quantitative real-time PCR: in detecting hepatotoxic cyanobacteria

Rantala-Ylinen, A., Sipari, H. & Sivonen, K., 2011, Microbial Toxins: Methods in Molecular Biology. Holst, O. (ed.). New York: Springer Science+Business Media, p. 73-86 (Methods in molecular biology; no. 739).

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

2010

Development of a Chip Assay and Quantitative PCR for Detecting Microcystin Synthetase E Gene Expression

Sipari, H., Rantala-Ylinen, A., Jokela, J., Oksanen, I. & Sivonen, K., 2010, In : Applied and Environmental Microbiology. 76, 12, p. 3797-3805 9 p.

Research output: Contribution to journalArticleScientificpeer-review

2008

Cyanobacterial community composition in shallow, eutrophic Lake Tuusulanjärvi studied by microscopy, strain isolation, DGGE and cloning

Rajaniemi-Wacklin, P., Rantala, A., Kuuppo, P., Haukka, K. & Sivonen, K., 2008, Cyanoprokaryota . Chapman, R. L. (ed.). Stuttgart: Schweizerbart, p. 137-157 21 p. (Algological studies; vol. 126:2008).

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Identification of hepatotoxin-producing cyanobacteria by DNA-chip

Rantala, A., Rizzi, E., Castiglioni, B., de Bellis, G. & Sivonen, K., 2008, In : Environmental Microbiology. 10, 3, p. 653-664 12 p.

Research output: Contribution to journalArticleScientificpeer-review

2007

Evolution and detection of cyanobacterial hepatotoxin synthetase genes

Rantala, A., 27 Nov 2007, Helsinki: University of Helsinki, Department of Applied Chemistry and Microbiology. 54 p.

Research output: ThesisDoctoral ThesisCollection of Articles

Method for detecting toxic and non-toxic cyanobacteria.

Sivonen, K., Rantala, A., Rouhiainen, L. A. O., Fewer, D. P., Rajaniemi-Wacklin, P., Wilmotte, A., Boutte, C., De Bellis, G., Rizzi, E., Frosini, A., Castiglioni, B., Ventura, S. & Mugnai, M-A., 15 Mar 2007, IPC No. C12Q1/68; C12P21/06; C07H21/04; C12N1/21; C07K14/195 , Patent No. 20070059699, 15 Mar 2007

Research output: Patent

2006

Correspondence between phylogeny and morphology of Snowella spp. and Woronichinia naegeliana, cyanobacteria commonly occurring in lakes

Rajaniemi, P., Rantala, A., Mugnai, M. A., Turicchia, S., Ventura, S., Komarkova, J., Lepistö, L. & Sivonen, K., 2006, In : Journal of Phycology. 42, 1, p. 226-232 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Detection of microcystin-producing cyanobacteria in Finnish lakes with genus-specific microcystin synthetase gene E (mcyE) PCR and associations with environmental factors

Rantala, A., Rajaniemi-Wacklin, P., Lyra, C., Lepistö, L., Rintala, J., Mankiewicz-Boczek, J. & Sivonen, K., 2006, In : Applied and Environmental Microbiology. 72, 9, p. 6101-6110 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Method for detecting toxic and non-toxic cyanobacteria

Sivonen, K., Rantala, A., Rouhiainen, L. A. O., Fewer, D. P., Rajaniemi-Wacklin, P., Wilmotte, A., Boutte, C., De Bellis, G., Rizzi, E., Frosini, A., Castiglioni, B., Ventura, S. & Mugnai, M-A., 1 Mar 2006, IPC No. C12Q1/68; C12Q; C12Q1/68; (IPC1-7): C12Q1/68, Patent No. EP1629114 (A2) , 1 Mar 2006

Research output: Patent

2005

Phylogenetic and morphological evaluation of the genera Anabaena, Aphanizomenon, Trichormus and Nostoc (Nostocales, Cyanobacteria)

Rajaniemi, P., Hrouzek, P., Kastovska, K., Willame, R., Rantala, A., Hoffmann, L., Komarek, J. & Sivonen, K., 2005, In : International Journal of Systematic and Evolutionary Microbiology. 55, 1, p. 11-26 16 p.

Research output: Contribution to journalArticleScientificpeer-review

2004

Development of a universal microarray based on the ligation detection reaction and 16S rRNA gene polymorphism to target diversity of cyanobacteria

Castiglioni, B., Rizzi, E., Frosini, A., Sivonen, K., Rajaniemi, P., Rantala, A., Mugnai, M. A., Ventura, S., Wilmotte, A., Boutte, C., Grubisic, S., Balthasart, P., Consolandi, C., Bordoni, R., Mezzelani, A., Battaglia, C. & De Bellis, G., 2004, In : Applied and Environmental Microbiology. 70, p. 7161-7172 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Phylogenetic evidence for the early evolution of microcystin synthesis

Rantala, A., Fewer, D. P., Hisbergues, M., Rouhiainen, L., Vaitomaa, J., Borner, T. & Sivonen, K., 2004, In : Proceedings of the National Academy of Sciences of the United States of America. 101, p. 568-573 6 p.

Research output: Contribution to journalArticleScientificpeer-review

2003

Quantitative real-time PCR for determination of microcystin synthetase E copy numbers for Microcystis and Anabaena in lakes

Vaitomaa, J., Rantala, A., Halinen, K., Rouhiainen, L., Tallberg, P., Mokelke, L. & Sivonen, K., 2003, In : Applied and Environmental Microbiology. 69, p. 7289-7297 9 p.

Research output: Contribution to journalArticleScientificpeer-review

2002

Application of an universal DNA microarray to cyanobacterial diversity assessment

Castiglioni, B., Rizzi, E., Frosini, A., Mugnai, M. A., Ventura, S., Sivonen, K., Rajaniemi, P., Rantala, A., Wilmotte, A., Boutte, C., Consolandi, C., Bordoni, R., Mezzelani, A., Busti, E., Bernardi, L. R., Battaglia, C. & De Bellis, G., 2002, In : Minerva biotecnologica. 14, p. 253-257 5 p.

Research output: Contribution to journalArticleScientificpeer-review

2000

Characterization of two unusual RS1 gene deletions segregating in Danish retinoschisis families

Huopaniemi, L., Tyynismaa, H., Rantala, A., Rosenberg, T. & Alitalo, T., 2000, In : Human Mutation. 16, p. 307-314 8 p.

Research output: Contribution to journalArticleScientificpeer-review

1999

Retinoskiisigeeniä etsimässä: Uusien geenimerkkien paikantaminen ja jatkumon rakentaminen ehdokasgeenialueelle

Translated title of the contribution: Looking for the Retinoschisis gene : localization of new gene markers and construction of a contig over the candidate gene regionRantala, A., 1999, Helsinki: [A. Rantala]. 55 p.

Research output: ThesisMaster's thesisTheses

Skewed secondary sex ratio in the offspring of carriers of the 214G>A mutation of the RS1 gene

Huopaniemi, L., Fellman, J., Rantala, A., Eriksson, A., Forsius, H., Chapelle, A. D. L. & Alitalo, T., 1999, In : Annals of Human Genetics. 63, p. 521-533 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Three widespread founder mutations contribute to high incidence of X-linked juvenile retinoschisis in Finland

Huopaniemi, L., Rantala, A., Forsius, H., Somer, M., de la Chapelle, A. & Alitalo, T., 1999, In : European Journal of Human Genetics. 7, p. 368-376 9 p.

Research output: Contribution to journalArticleScientificpeer-review

1998

Functional implications of the spectrum of mutations found in 234 cases with X-linked juvenile retinoschisis (XLRS)

den Dunnen, J. T., Kraayenbrink, T., van Schooneveld, M., van de Vosse, E., de Jong, P. T. V. M., ten Brink, J. B., Schuurman, E., Tijmes, N., van Ommen, G. J. B., Bergen, A. A. B., Andolfi, G., Montini, E., Li, Y., Oudet, C., Bolz, H., Kaplan, J., Orth, U., Gal, A., Hanauer, A., Bardelli, A. M. & 31 others, Ayuso, C., Diaz, F. J., Bitoun, P., Ventruto, V., Ballabio, A., Franco, B., Hiriyanna, K. T., Bingham, E. L., McHenry, C., Pawar, H., Coats, C., Darga, T., Richards, J. E., Sieving, P. A., Huopaniemi, L., Rantala, A., Rosenberg, T., Dahl, N., Wright, A., de la Chapelle, A., Alitalo, T., Lenzner, S., Brunner, B., Feil, S., Niesler, B., Schulz, U., Pinckers, A., Blankennagel, A., Ruether, K., Kellner, U. & Retinoschisis Consortium, 1998, In : Human Molecular Genetics. 7, p. 1185-1192 8 p.

Research output: Contribution to journalArticleScientificpeer-review

1997

Linkage disequilibrium and physical mapping of X-linked juvenile retinoschisis

Huopaniemi, L., Rantala, A., Tahvanainen, E., delaChapelle, A. & Alitalo, T., 1997, In : American Journal of Human Genetics. 60, p. 1139-1149 11 p.

Research output: Contribution to journalArticleScientificpeer-review