Research output per year
Research output per year
Personal profile
Fields of Science
- 318 Medical biotechnology
- 112 Statistics and probability
- 113 Computer and information sciences
International and National Collaboration
Publications and projects within past five years.
Publications
- 12 Article
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Evolutionary states and trajectories characterized by distinct pathways stratify patients with ovarian high grade serous carcinoma
Lahtinen, A., Lavikka, K., Virtanen, A., Li, Y., Jamalzadeh, S., Skorda, A., Rossberg Lauridsen, A., Zhang, K., Marchi, G., Isoviita, V-M., Ariotta, V., Lehtonen, O., Muranen, T. A., Huhtinen, K., Carpen, O., Hietanen, S., Senkowski, W., Kallunki, T., Häkkinen, A., Hynninen, J., & 2 others, 12 Jun 2023, In: Cancer Cell. 41, 6, p. 1103-+ 28 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Longitudinal single-cell RNA-seq analysis reveals stress-promoted chemoresistance in metastatic ovarian cancer
Zhang, K., Erkan, E. P., Jamalzadeh, S., Dai, J., Andersson, N., Kaipio, K., Lamminen, T., Mansuri, N., Huhtinen, K., Carpen, O., Hietanen, S., Oikkonen, J., Hynninen, J., Virtanen, A., Häkkinen, A., Hautaniemi, S. & Väharautio, A., Feb 2022, In: Science Advances. 8, 8, 18 p., 1831.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
POIBM: batch correction of heterogeneous RNA-seq datasets through latent sample matching
Holmström, S., Hautaniemi, S. & Häkkinen, A., 28 Apr 2022, In: Bioinformatics. 38, 9, p. 2474-2480 7 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
QuantISH: RNA in situ hybridization image analysis framework for quantifying cell type-specific target RNA expression and variability
Jamalzadeh, S., Häkkinen, A., Andersson, N., Huhtinen, K., Laury, A., Hietanen, S., Hynninen, J., Oikkonen, J., Carpen, O., Virtanen, A. & Hautaniemi, S., Jul 2022, In: Laboratory Investigation. 102, 7, p. 753-761 9 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
The transcription factor network of E. coli steers global responses to shifts in RNAP concentration
L. B. Almeida, B., M. Bahrudeen, M. N., Chauhan, V., Dash, S., Kandavalli, V., Häkkinen, A., Lloyd-Price, J., S. D. Cristina, P., Baptista, I. S. C., Gupta, A., Kesseli, J., Dufour, E., Smolander, O-P., Nykter, M., Auvinen, P., Jacobs, H. T., M. D. Oliveira, S. & S. Ribeiro, A., 8 Jul 2022, In: Nucleic Acids Research. 50, 12, p. 6801-6819 19 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile