Research output per year
Research output per year
Personal profile
Fields of Science
- 11832 Microbiology and virology
- 1181 Ecology, evolutionary biology
International and National Collaboration
Publications and projects within past five years.
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Metagenomic Analysis of the Abundance and Composition of Antibiotic Resistance Genes in Hospital Wastewater in Benin, Burkina Faso, and Finland
Markkanen, M. A., Haukka, K., Pärnänen, K., Dougnon, T. V., Bonkoungou, O. I. J., Garba, Z., Tinto, H., Sarekoski, A. K., Karkman, A., Kantele, A. & Virta, M. P. J., 21 Feb 2023, In: Msphere. 8, 1, 17 p., e00538-22.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Community-led, integrated, reproducible multi-omics with anvi'o
Eren, A. M., Kiefl, E., Shaiber, A., Veseli, I., Miller, S. E., Schechter, M. S., Fink, I., Pan, J. N., Yousef, M., Fogarty, E. C., Trigodet, F., Watson, A. R., Esen, O. C., Moore, R. M., Clayssen, Q., Lee, M. D., Kivenson, V., Graham, E. D., Merrill, B. D., Karkman, A., & 14 others, Jan 2021, In: Nature Microbiology. 6, p. 3-6 4 p.Research output: Contribution to journal › Editorial › Scientific
Open AccessFile -
Interplay between skin microbiota and immunity in atopic individuals
Riskumäki, M., Tessas, I., Ottman, N., Suomalainen, A., Werner, P., Karisola, P., Lauerma, A., Ruokolainen, L., Karkman, A., Wisgrill, L., Sinkko, H., Lehtimäki, J., Alenius, H. & Fyhrquist, N., Apr 2021, In: Allergy: European Journal of Allergy and Clinical Immunology. 76, 4, p. 1280-1284 5 p.Research output: Contribution to journal › Letter › Scientific
Open AccessFile -
Contrasting microbiotas between Finnish and Estonian infants: exposure to Acinetobacter may contribute to the allergy gap
Ruokolainen, L., Parkkola, A., Karkman, A., Sinkko, H., Peet, A., Hämäläinen, A-M., von Hertzen, L., Tillmann, V., Koski, K., Virtanen, S. M., Niemelä, O., Haahtela, T. & Knip, M., Sep 2020, In: Allergy : European journal of allergy and clinical immunology. 75, 9, p. 2342-2351 10 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Immune-microbiota interaction in Finnish and Russian Karelia young people with high and low allergy prevalence
Ruokolainen, L., Fyhrquist, N., Laatikainen, T., Auvinen, P., Fortino, V., Scala, G., Jousilahti, P., Karisola, P., Vendelin, J., Karkman, A., Markelova, O., Mäkelä, M. J., Lehtimäki, S., Ndika, J., Ottman, N., Paalanen, L., Paulin, L., Vartiainen, E., von Hertzen, L., Greco, D., & 2 others, Oct 2020, In: Clinical and Experimental Allergy. 50, 10, p. 1148-1158 11 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile
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Antibiotic resisstance in human impacted environments
Pärnänen, K. M. M., Muziasari, W., Tamminen, M., Karkman, A., Lyra, C. & Muurinen, J.
01/01/2011 → …
Project: Research project
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Genomics and metagenomics of bacterial antibiotic and metal resistance
Tamminen, M., Karkman, A., Pitkänen, L., Muziasari, W., Lyra, C., Pärnänen, K. M. M., Muurinen, J., Hynninen, A. & Virta, M.
01/01/2005 → …
Project: Research project
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STAR-DUST: Jäteveden puhdistus ja antibioottiresistomi - Kehittyminen, tuntemattomat yhteydet, valintapaine ja siirtyminen
09/01/2019 → 31/12/2021
Project: Research project
Activities
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TU Dresden, Institute for Hydrobiology
Antti Karkman (Visiting researcher)
1 Feb 2014 → 15 Mar 2014Activity: Visiting an external institution types › Academic visit to other institution
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Metagenomic Methods for Microbial Ecologists
Antti Karkman (Attendee)
15 Sep 2014 → 19 Sep 2014Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars
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Institute of Technology, University of Tartu
Antti Karkman (Visiting researcher)
15 Sep 2011 → 14 Oct 2011Activity: Visiting an external institution types › Academic visit to other institution
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ISME13
Antti Karkman (Attendee)
22 Aug 2010 → 27 Aug 2010Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars
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Biological sequence analysis
Antti Karkman (Attendee)
15 May 2009 → 29 May 2009Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars
Press/Media
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Antibiotic Resistance Genes in Air Traced to East China Landfill
25/03/2020
1 item of Media coverage
Press/Media: Press / Media
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Antibiotic-Resistant Genes in Air Traced to East China Landfill
25/03/2020
1 item of Media coverage
Press/Media: Press / Media
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Antibiotic Resistance Levels Reflected in Wastewater
28/03/2019
1 item of Media coverage
Press/Media: Press / Media
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-UNIVERSITY OF HELSINKI: Wastewater reveals the levels of antibiotic resistance in a region
28/03/2019
1 item of Media coverage
Press/Media: Press / Media
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Wastewater reveals the levels of antibiotic resistance in a region
27/03/2019
5 items of Media coverage
Press/Media: Press / Media