Research output per year
Research output per year
Personal profile
Fields of Science
- 11832 Microbiology and virology
- 1181 Ecology, evolutionary biology
Supervisor for doctoral programme
- Doctoral Programme in One Health
- Doctoral programme in multidisciplinary research in renewable natural resources
Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
-
Long-read metagenomics and methylation-based binning support the discovery of antibiotic resistance gene–host associations in complex communities
Markkanen, M., Putkuri, H., Kiciatovas, D., Mustonen, V., Virta, M. & Karkman, A., 13 Jul 2026, (Accepted/In press) In: Genome Biology.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access -
Comparative genomics and characterization of highly adhesive and stress resistant <i>Lacticaseibacillus paracasei</i> strain E
Zhang, N., Karkman, A., Hiippala, K., Satokari, R., Takala, T. M. & Saris, P. E. J., 2025, In: Current research in food science. 11, 10 p., 101245.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Complete genome sequences of <i>Lacticaseibacillus paracasei</i> strains E and E11.5 isolated from dairy products
Zhang, N., Mulaw, G., Karkman, A., Takala, T. M. & Saris, P. E. J., 10 Jul 2025, In: Microbiology Resource Announcements. 14, 7, 4 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Sulfonamide resistance gene sul4 is hosted by common wastewater sludge bacteria and found in various newly described contexts and hosts
Markkanen, M. A., Pezzutto, D., Virta, M. & Karkman, A., 19 Nov 2025, In: Microbiology Spectrum. 22 p., e00857-25.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile -
Use of sequence barcodes for tracking horizontal gene transfer of antimicrobial resistance genes in a microbial community
Partanen, A. V. K., Dekić Rozman, S., Karkman, A. V., Muurinen, S. J., Hiltunen, T. J. & Virta, M. P. J., 10 Jul 2025, In: ISME communications. 5, 1, 10 p., ycaf113.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile
-
Risks and Mitigation of Antimicrobial Resistance Across One Health Sectors - AMaRONE
Karkman, A. (Project manager)
Suomen Akatemia Talous/Paula Pesola
01/09/2026 → 31/08/2030
Project: Research Council of Finland: Academy Project
-
Nordic consortium on the role of biocide
Karkman, A. (Project manager)
15/12/2024 → 14/12/2026
Project: External funding
-
Antibiotic resisstance in human impacted environments
Pärnänen, K. M. M. (Participant), Muziasari, W. (Participant), Tamminen, M. (Participant), Karkman, A. (Participant), Lyra, C. (Participant) & Muurinen, J. (Participant)
01/01/2011 → …
Project: Research project
-
Genomics and metagenomics of bacterial antibiotic and metal resistance
Tamminen, M. (Participant), Karkman, A. (Participant), Pitkänen, L. (Participant), Muziasari, W. (Participant), Lyra, C. (Participant), Pärnänen, K. M. M. (Project manager), Muurinen, J. (Project manager), Hynninen, A. (Project manager) & Virta, M. (Principal Investigator)
01/01/2005 → …
Project: Research project
-
STAR-DUST: Jäteveden puhdistus ja antibioottiresistomi - Kehittyminen, tuntemattomat yhteydet, valintapaine ja siirtyminen
Karkman, A. (Project manager)
09/01/2019 → 31/12/2021
Project: Research project
Activities
-
TU Dresden, Institute for Hydrobiology
Karkman, A. (Visiting researcher)
1 Feb 2014 → 15 Mar 2014Activity: Visiting an external institution types › Academic visit to other institution
-
Metagenomic Methods for Microbial Ecologists
Karkman, A. (Attendee)
15 Sept 2014 → 19 Sept 2014Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars
-
Institute of Technology, University of Tartu
Karkman, A. (Visiting researcher)
15 Sept 2011 → 14 Oct 2011Activity: Visiting an external institution types › Academic visit to other institution
-
ISME13
Karkman, A. (Attendee)
22 Aug 2010 → 27 Aug 2010Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars
-
Microbial genomics and metagenomics workshop
Karkman, A. (Attendee)
1 Jun 2009 → 5 Jun 2009Activity: Participating in or organising an event types › Organisation and participation in conferences, workshops, courses, seminars
Press/Media
-
Antibiotic Resistance Genes in Air Traced to East China Landfill
25/03/2020
1 item of Media coverage
Press/Media: Press / Media
-
Antibiotic-Resistant Genes in Air Traced to East China Landfill
25/03/2020
1 item of Media coverage
Press/Media: Press / Media
-
Antibiotic Resistance Levels Reflected in Wastewater
28/03/2019
1 item of Media coverage
Press/Media: Press / Media
-
-UNIVERSITY OF HELSINKI: Wastewater reveals the levels of antibiotic resistance in a region
28/03/2019
1 item of Media coverage
Press/Media: Press / Media
-
Wastewater reveals the levels of antibiotic resistance in a region
27/03/2019
5 items of Media coverage
Press/Media: Press / Media