• PL 65 (Viikinkaari 1)

    00014

    Finland

  • Finland

  • Viikinkaari 1, R 6415

    00014 Helsinki

    Finland

  • Viikinkaari 1, Biocentre 3

    00790 Helsinki

    Finland

20002019
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Publications 2000 2019

2019

A core mechanism for specifying root vascular patterning can replicate the anatomical variation seen in diverse plant species

Mellor, N., Vaughan-Hirsch, J., Kumpers, B. M. C., Help-Rinta-Rahko, H., Miyashima, S., Mahonen, A. P., Campilho, A., Kings, J. R. & Bishopp, A., Mar 2019, In : Development. 146, 6, 10 p., 172411.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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High levels of auxin signalling define the stem-cell organizer of the vascular cambium

Smetana, O., Mäkilä, R., Lyu, M., Amiryousefi, A., Rodriguez, F. S., Wu, M-F., Sole-Gil, A., Gavarron, M. L., Siligato, R., Miyashima, S., Roszak, P., Blomster, T., Reed, J. W., Broholm, S. & Mähönen, A. P., 24 Jan 2019, In : Nature. 565, 7740, p. 485-+ 20 p.

Research output: Contribution to journalArticleScientificpeer-review

Mobile PEAR transcription factors integrate positional cues to prime cambial growth

Miyashima, S., Roszak, P., Sevilem, I., Toyokura, K., Blob, B., Heo, J., Mellor, N., Help-Rinta-Rahko, H., Otero, S., Smet, W., Boekschoten, M., Hooiveld, G., Hashimoto, K., Smetana, O., Siligato, R., Wallner, E-S., Mähönen, A. P., Kondo, Y., Melnyk, C. W., Greb, T. & 5 othersNakajima, K., Sozzani, R., Bishopp, A., De Rybel, B. & Helariutta, Y., 24 Jan 2019, In : Nature. 565, 7740, p. 490-+ 21 p.

Research output: Contribution to journalArticleScientificpeer-review

2018

A cellular passage to the root interior

El-Showk, S. & Mahonen, A. P., 22 Mar 2018, In : Nature. 555, 7697, p. 454-455 2 p.

Research output: Contribution to journalEditorialScientificpeer-review

Editorial Overview: Growth and development

Ingram, G. & Mahonen, A. P., Feb 2018, In : Current Opinion in Plant Biology. 41, p. III-V 3 p.

Research output: Contribution to journalEditorialScientific

Open Access
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Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A.thaliana

Baesso, B., Chiatante, D., Terzaghi, M., Zenga, D., Nieminen, K., Mähönen, A. P., Siligato, R., Helariutta, Y. E., Scippa, G. S. & Montagnoli, A., May 2018, In : Plant Biology. 20, 3, p. 426-432 7 p.

Research output: Contribution to journalArticleScientificpeer-review

2017

Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch

Salojärvi, J., Smolander, O-P., Nieminen, K., Rajaraman, S., Safronov, O., Safdari, P., Lamminmäki, A., Immanen, J., Lan, T., Tanskanen, J., Rastas, P., Amiryousefi, A., Jayaprakash, B., Kammonen, J. I., Hagqvist, R., Eswaran, G., Ahonen, V. H., Serra, J. A., Asiegbu, F. O., Barajas-Lopez, J. D. D. & 65 othersBlande, D., Blokhina, O., Blomster, T., Broholm, S., Brosche, M., Cui, F., Dardick, C., Ehonen, S. E., Elomaa, P., Escamez, S., Fagerstedt, K. V., Fujii, H., Gauthier, A., Gollan, P. J., Halimaa, P., Heino, P. I., Himanen, K., Hollender, C., Kangasjarvi, S., Kauppinen, L., Kelleher, C. T., Kontunen-Soppela, S., Koskinen, J. P., Kovalchuk, A., Karenlampi, S. O., Kärkönen, A. K., Lim, K-J., Leppälä, J., Macpherson, L., Mikola, J., Mouhu, K., Mähönen, A. P., Niinemets, U., Oksanen, E., Overmyer, K., Palva, E. T., Pazouki, L., Pennanen, V., Puhakainen, T., Poczai, P., Possen, B. J. H. M., Punkkinen, M., Rahikainen, M. M., Rousi, M., Ruonala, R., van der Schoot, C., Shapiguzov, A., Sierla, M., Sipilä, T. P., Sutela, S., Teeri, T. H., Tervahauta, A. I., Vaattovaara, A., Vahala, J., Vetchinnikova, L., Welling, A., Wrzaczek, M., Xu, E., Paulin, L. G., Schulman, A. H., Lascoux, M., Albert, V. A., Auvinen, P., Helariutta, Y. & Kangasjarvi, J., 8 May 2017, In : Nature Genetics. 49, 6, p. 904-912 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Theoretical approaches to understanding root vascular patterning: a consensus between recent models

Mellor, N., Adibi, M., El-Showk, S., De Rybel, B., King, J., Mahonen, A. P., Weijers, D. & Bishopp, A., Jan 2017, In : Journal of Experimental Botany. 68, 1, p. 5-16 12 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Open Access
2016

Cytokinin and Auxin Display Distinct but Interconnected Distribution and Signaling Profiles to Stimulate Cambial Activity

Immanen, J., Nieminen, K., Smolander, O-P., Kojima, M., Serra, J. A., Koskinen, P., Zhang, J., Elo, A., Mähönen, A. P., Street, N., Bhalerao, R. P., Paulin, L., Auvinen, P., Sakakibara, H. & Helariutta, Y., 8 Aug 2016, In : Current Biology. 26, 15, p. 1990-1997 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access

MultiSite Gateway-Compatible Cell Type-Specific Gene-Inducible System for Plants

Siligato, R., Wang, X., Yadav, S. R., Lehesranta, S., Ma, G., Ursache, R., Sevilem, I., Zhang, J., Gorte, M., Prasad, K., Wrzaczek, M., Heidstra, R., Murphy, A., Scheres, B. & Mähönen, A. P., Feb 2016, In : Plant Physiology. 170, 2, p. 627-641 15 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access

Plant vascular development: from early specification to differentiation

De Rybel, B., Mähonen, A. P., Helariutta, Y. & Weijers, D., Jan 2016, In : Nature Reviews. Molecular Cell Biology. 17, 1, 11 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Protocol: a method to study the direct reprogramming of lateral root primordia to fertile shoots

Kareem, A., Radhakrishnan, D., Wang, X., Bagavathiappan, S., Trivedi, Z. B., Sugimoto, K., Xu, J., Mähonen, A. P. & Prasad, K., 12 May 2016, In : Plant Methods. 12, 14 p., 27.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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The PLETHORA gene regulatory network guides growth and cell differentiation in Arabidopsis roots

Santuari, L., Sanchez-Perez, G. F., Luijten, M., Rutjens, B., Terpstra, I., Berke, L., Gorte, M., Prasad, K., Bao, D., Timmermans-Hereijgers, J. L. P. M., Maeo, K., Nakamura, K., Shimotohno, A., Pencik, A., Novak, O., Ljung, K., van Heesch, S., de Bruijn, E., Cuppen, E., Willemsen, V. & 6 othersMähönen, A. P., Lukowitz, W., Snel, B., de Ridder, D., Scheres, B. & Heidstra, R., 2016, In : Plant Cell. 28, 12, p. 2937-2951 15 p.

Research output: Contribution to journalArticleScientificpeer-review

2015

AINTEGUMENTA and the D-type cyclin CYCD3;1 regulate root secondary growth and respond to cytokinins

Randall, R. S., Miyashima, S., Blomster, T., Zhang, J., Elo, A., Karlberg, A., Immanen, J., Nieminen, K., Lee, J-Y., Kakimoto, T., Blajecka, K., Melnyk, C. W., Alcasabas, A., Forzani, C., Matsumoto-Kitano, M., Mähönen, A. P., Bhalerao, R., Dewitte, W., Helariutta, Y. & Murray, J. A. H., 15 Oct 2015, In : Biology open. 4, 10, p. 1229-1236 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Arabidopsis BIRD Zinc Finger Proteins Jointly Stabilize Tissue Boundaries by Confining the Cell Fate Regulator SHORT-ROOT and Contributing to Fate Specification

Long, Y., Smet, W., Cruz-Ramirez, A., Castelijns, B., de Jonge, W., Mähönen, A. P., Bouchet, B. P., Perez, G. S., Akhmanova, A., Scheres, B. & Blilou, I., Apr 2015, In : Plant Cell. 27, 4, p. 1185-1199 15 p.

Research output: Contribution to journalArticleScientificpeer-review

Auxin Influx Carriers Control Vascular Patterning and Xylem Differentiation in Arabidopsis thaliana

Fabregas, N., Formosa-Jordan, P., Confraria, A., Siligato, R., Alonso, J. M., Swarup, R., Bennett, M. J., Mähönen, A. P., Cano-Delgado, A. I. & Ibanes, M., Apr 2015, In : PLoS Genetics. 11, 4, 26 p., 1005183.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Integration of photosynthesis, development and stress as an opportunity for plant biology

Allahverdieyeva, Y., Battchikova, N., Brosche, M., Fujii, H., Kangasjärvi, S., Mulo, P., Mähönen, A. P., Nieminen, K. P. M., Overmyer, K. L., Salojärvi, J. T. & Wrzaczek, M. A., 14 Jul 2015, In : New Phytologist. 208, 3, p. 647-655 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Parsimonious Model of Vascular Patterning Links Transverse Hormone Fluxes to Lateral Root Initiation: Auxin Leads the Way, while Cytokinin Levels Out

el-Showk, S., Help-Rinta-Rahko, H., Blomster, T., Siligato, R., Maree, A. F. M., Mähonen, A. P. & Grieneisen, V. A., Oct 2015, In : PLoS Computational Biology. 11, 10, 40 p., 1004450.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Root Cap-Derived Auxin Pre-patterns the Longitudinal Axis of the Arabidopsis Root

Xuan, W., Audenaert, D., Parizot, B., Möller, B. K., Njo, M. F., De Rybel, B., De Rop, G., Van Isterdael, G., Mähönen, A. P., Vanneste, S. & Beeckman, T., 18 May 2015, In : Current Biology. 25, 10, p. 1381-1388 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Vascular Cambium Development.

Nieminen, K. P. M., Blomster, T. J., Helariutta, Y. E. & Mähönen, A. P., 21 May 2015, In : The arabidopsis book . 13, 23 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
2014

PLETHORA gradient formation mechanism separates auxin responses

Mähönen, A. P., ten Tusscher, K., Siligato, R., Smetana, O., Diaz-Trivino, S., Salojärvi, J. T., Wachsman, G., Prasad, K., Heidstra, R. & Scheres, B., 2014, In : Nature. 515, 7525, p. 125-+ 39 p.

Research output: Contribution to journalArticleScientificpeer-review

The Arabidopsis thaliana cysteine-rich receptor-like kinases CRK6 and CRK7 protect against apoplastic oxidative stress

Idänheimo, N., Gauthier, A., Salojärvi, J., Siligato, R., Brosche, M., Kollist, H., Mähönen, A. P., Kangasjärvi, J. & Wrzaczek, M., 7 Mar 2014, In : Biochemical and Biophysical Research Communications. 445, 2, p. 457-462 6 p.

Research output: Contribution to journalArticleScientificpeer-review

2013

Lituruohon juuren jälsisolukon molekyylibiologinen tutkimus

Blomster, T. J. & Mähönen, A. P., 2013, In : Luonnon Tutkija. 117, 4, p. 160-163

Research output: Contribution to journalArticleGeneral public

2012

A Bistable Circuit Involving SCARECROW-RETINOBLASTOMA Integrates Cues to Inform Asymmetric Stem Cell Division

Cruz-Ramirez, A., Diaz-Trivino, S., Blilou, I., Grieneisen, V. A., Sozzani, R., Zamioudis, C., Miskolczi, P., Nieuwland, J., Benjamins, R., Dhonukshe, P., Caballero-Perez, J., Horvath, B., Long, Y., Mahonen, A. P., Zhang, H., Xu, J., Murray, J. A. H., Benfey, P. N., Bako, L., Maree, A. F. M. & 1 othersScheres, B., 31 Aug 2012, In : Cell. 150, 5, p. 1002-1015 14 p.

Research output: Contribution to journalArticleScientificpeer-review

2011

A Mutually Inhibitory Interaction between Auxin and Cytokinin Specifies Vascular Pattern in Roots

Bishopp, A., Help, H., El-Showk, S., Weijers, D., Friml, J., Benková, E., Mähönen, A. P. & Helariutta, Y., 2011, In : Current Biology. 21, 11, p. 917–926 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Arabidopsis PLETHORA transcription factors control phyllotaxis

Prasad, K., Grigg, S., Barkoulas, M., Yadav, R. K., Sanchez-Perez, G. F., Pinon, V., Blilou, I., Hofhuis, H., Dhonukshe, P., Galinha, C., Mähönen, A. P., Muller, W. H., Raman, S., Verkleij, A. J., Snel, B., Reddy, G. V., Tsiantis, M. & Scheres, B., 23 Jun 2011, In : Current Biology. 21, p. 1123-1128

Research output: Contribution to journalArticleScientificpeer-review

Bisymmetry in the embryonic root is dependent on cotyledon number and position

Help, H., Mähönen, A. P., Helariutta, Y. & Bishopp, A., 2011, In : Plant Signalling & Behavior. 6, 11, p. 1837-1840 4 p.

Research output: Contribution to journalArticleScientificpeer-review

Callose Biosynthesis Regulates Symplastic Trafficking during Root Development

Vaten, A., Dettmer, J., Wu, S., Stierhof, Y-D., Miyashima, S., Yadav, S. R., Roberts, C. J., Campilho, A., Bulone, V., Lichtenberger, R., Lehesranta, S., Mähonen, A. P., Kim, J-Y., Jokitalo, E., Sauer, N., Scheres, B., Nakajima, K., Carlsbecker, A., Gallagher, K. L. & Helariutta, Y., 2011, In : Developmental Cell. 21, 6, p. 1144-1155 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Phloem-transported cytokinin regulates polar auxin transport and maintains vascular pattern in the root meristem.

Bishopp, A., Lehesranta, S., Vaten, A., Help, H., El-Showk, S., Scheres, B., Helariutta, K., Mähönen, A. P., Sakakibara, H. & Helariutta, Y., 2011, In : Current Biology. 21, 11, p. 927-932 6 p.

Research output: Contribution to journalArticleScientificpeer-review

2010

Plasma membrane-bound AGC3 kinases phosphorylate PIN auxin carriers at TPRXS(N/S) motifs to direct apical PIN recycling

Dhonukshe, P., Huang, F., Galvan-Ampudia, C. S., Mahonen, A. P., Kleine-Vehn, J., Xu, J., Quint, A., Prasad, K., Friml, J., Scheres, B. & Offringa, R., 2010, In : Development. 138, 3, p. 3245-3255 11 p.

Research output: Contribution to journalArticleScientificpeer-review

2008

Generation of cell polarity in plants links endocytosis, auxin distribution and cell fate decisions

Dhonukshe, P., Tanaka, H., Goh, T., Ebine, K., Mahonen, A. P., Prasad, K., Blilou, I., Geldner, N., Xu, J., Uemura, T., Chory, J., Ueda, T., Nakano, A., Scheres, B. & Friml, J., 2008, In : Nature. 456, p. 962-U75 6 p.

Research output: Contribution to journalArticleScientificpeer-review

2006

Cytokinin signaling and its inhibitor AHP6 regulate cell fate during vascular development

Mähönen, A. P., Bishopp, A., Higuchi, M., Nieminen, K. M., Kinoshita, K., Törmäkangas, K., Ikeda, Y., Oka, A., Kakimoto, T. & Helariutta, Y., 2006, In : Science. 311, 5757, p. 94-98 5 p.

Research output: Contribution to journalArticleScientificpeer-review

Cytokinins regulate a bidirectional phosphorelay network in Arabidopsis

Mähönen, A. P., Higuchi, M., Törmäkangas, K., Miyawaki, K., Pischke, M. S., Sussman, M. R., Helariutta, Y. & Kakimoto, T., 2006, In : Current Biology. 16, 11, p. 1116-1122 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Signs of change: hormone receptors that regulate plant development

Bishopp, A., Mähönen, A. P. & Helariutta, Y., 2006, In : Development. 133, p. 1857-1869 13 p.

Research output: Contribution to journalArticleScientificpeer-review

2004

In planta functions of the Arabidopsis cytokinin receptor family

Higuchi, M., Pischke, M. S., Mahonen, A. P., Miyawaki, K., Hashimoto, Y., Seki, M., Kobayashi, M., Shinozaki, K., Kato, T., Tabata, S., Helariutta, Y., Sussman, M. R. & Kakimoto, T., 2004, In : Proceedings of the National Academy of Sciences of the United States of America. 101, p. 8821-8826 6 p.

Research output: Contribution to journalArticleScientificpeer-review

2003

APL regulates vascular tissue identity in Arabidopsis

Bonke, M., Thitamadee, S., Mahonen, A. P., Hauser, M. T. & Helariutta, Y., 2003, In : Nature. 426, p. 181-186 6 p.

Research output: Contribution to journalArticleScientificpeer-review

2000

A novel two-component hybrid molecule regulates vascular morphogenesis of the Arabidopsis root

Mahonen, A. P., Bonke, M., Kauppinen, L., Benfey, P. N. & Helariutta, Y., 2000, In : Genes & Development. 14, p. 2938-2943 6 p.

Research output: Contribution to journalArticleScientificpeer-review