• PL 68 (Pietari Kalmin katu 5)

    00014

    Finland

  • Finland

  • PL 68 (Gustaf Hällströmin katu 2b)

    HELSINGIN YLIOPISTO

    Finland

20142019
If you made any changes in Pure these will be visible here soon.

Personal profile

Keywords

  • 113 Computer and information sciences
  • algorithms and data structures

International and National Collaboration Publications and projects within past five years.

Publications 2014 2019

  • 7 Article
  • 4 Conference contribution
  • 1 Chapter
  • 1 Doctoral Thesis

Hardness of Covering Alignment: Phase Transition in Post-Sequence Genomics

Rizzi, R., Cairo, M., Mäkinen, V., Tomescu, A. I. & Valenzuela, D., Feb 2019, In : IEEE/ACM Transactions on Computational Biology and Bioinformatics. 16, 1, p. 23-30 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

Computational pan-genomics: status, promises and challenges

The Computational Pan-Genomics Consortium, Mäkinen, V. A. T. & Valenzuela, S. D. A., Jan 2018, In : Briefings in Bioinformatics. 19, 1, p. 118-135 18 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access

Towards pan-genome read alignment to improve variation calling

Valenzuela, D., Norri, T., Välimäki, N., Pitkänen, E. & Mäkinen, V., 9 May 2018, In : BMC Genomics. 19, 8 p., 87.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

Algorithms and Data Structures for Sequence Analysis in the Pan-Genomic Era

Valenzuela, S. D. A., 9 Jun 2017, Helsinki: University of Helsinki. 74 p.

Research output: ThesisDoctoral ThesisCollection of Articles

Open Access

Compressed Spaced Suffix Arrays

Gagie, T., Manzini, G. & Valenzuela, D., Jun 2017, In : Mathematics in Computer Science. 11, 2, p. 151-157 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Activities 2014 2018

  • 6 Oral presentation
  • 2 Academic visit to other institution
  • 1 Organisation and participation in conferences, workshops, courses, seminars

Towards pan-genome read alignment to improve variation calling

Daniel Valenzuela (Speaker)
15 Jan 2018

Activity: Talk or presentation typesOral presentation

Hardness of Covering Alignment: Phase Transition in Post-Sequence Genomics

Daniel Valenzuela (Speaker)
15 Jan 2018

Activity: Talk or presentation typesOral presentation

Department of Biosystems Science and Engineering, ETH Zürich, Basel

Daniel Valenzuela (Visiting researcher)
16 Apr 201820 Apr 2018

Activity: Visiting an external institution typesAcademic visit to other institution

University of Chile

Daniel Valenzuela (Visiting researcher)
22 Oct 201727 Dec 2018

Activity: Visiting an external institution typesAcademic visit to other institution

International Workshop on Combinatorial Algorithms

Daniel Valenzuela (Attendee)
1 Apr 201619 Aug 2017

Activity: Participating in or organising an event typesOrganisation and participation in conferences, workshops, courses, seminars