20142020

Research output per year

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Personal profile

Fields of Science

  • 113 Computer and information sciences
  • algorithms and data structures

International and National Collaboration Publications and projects within past five years.

Publications

  • 8 Article
  • 4 Conference contribution
  • 1 Chapter
  • 1 Doctoral Thesis

Lempel-Ziv-Like Parsing in Small Space

Kosolobov, D., Valenzuela, D., Navarro, G. & Puglisi, S. J., 25 May 2020, In : Algorithmica. 21 p.

Research output: Contribution to journalArticleScientificpeer-review

Hardness of Covering Alignment: Phase Transition in Post-Sequence Genomics

Rizzi, R., Cairo, M., Mäkinen, V., Tomescu, A. I. & Valenzuela, D., Feb 2019, In : IEEE/ACM Transactions on Computational Biology and Bioinformatics. 16, 1, p. 23-30 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

Computational pan-genomics: status, promises and challenges

The Computational Pan-Genomics Consortium, Mäkinen, V. A. T. & Valenzuela, S. D. A., Jan 2018, In : Briefings in Bioinformatics. 19, 1, p. 118-135 18 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access

Towards pan-genome read alignment to improve variation calling

Valenzuela, D., Norri, T., Välimäki, N., Pitkänen, E. & Mäkinen, V., 9 May 2018, In : BMC Genomics. 19, 8 p., 87.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File

Algorithms and Data Structures for Sequence Analysis in the Pan-Genomic Era

Valenzuela, S. D. A., 9 Jun 2017, Helsinki: University of Helsinki. 74 p.

Research output: ThesisDoctoral ThesisCollection of Articles

Open Access

Activities

  • 6 Oral presentation
  • 2 Academic visit to other institution
  • 1 Organisation and participation in conferences, workshops, courses, seminars

Department of Biosystems Science and Engineering, ETH Zürich, Basel

Daniel Valenzuela (Visiting researcher)
16 Apr 201820 Apr 2018

Activity: Visiting an external institution typesAcademic visit to other institution

Towards pan-genome read alignment to improve variation calling

Daniel Valenzuela (Speaker)
15 Jan 2018

Activity: Talk or presentation typesOral presentation

Hardness of Covering Alignment: Phase Transition in Post-Sequence Genomics

Daniel Valenzuela (Speaker)
15 Jan 2018

Activity: Talk or presentation typesOral presentation

University of Chile

Daniel Valenzuela (Visiting researcher)
22 Oct 201727 Dec 2018

Activity: Visiting an external institution typesAcademic visit to other institution

International Workshop on Combinatorial Algorithms

Daniel Valenzuela (Attendee)
1 Apr 201619 Aug 2017

Activity: Participating in or organising an event typesOrganisation and participation in conferences, workshops, courses, seminars