• Finland

  • PL 68 (Gustaf Hällströmin katu 2b)

    HELSINGIN YLIOPISTO

    Finland

20142019
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Publications 2014 2019

  • 7 Article
  • 4 Conference contribution
  • 1 Chapter
  • 1 Doctoral Thesis
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Article
2019

Hardness of Covering Alignment: Phase Transition in Post-Sequence Genomics

Rizzi, R., Cairo, M., Mäkinen, V., Tomescu, A. I. & Valenzuela, D., Feb 2019, In : IEEE/ACM Transactions on Computational Biology and Bioinformatics. 16, 1, p. 23-30 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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2018

Computational pan-genomics: status, promises and challenges

The Computational Pan-Genomics Consortium, Mäkinen, V. A. T. & Valenzuela, S. D. A., Jan 2018, In : Briefings in Bioinformatics. 19, 1, p. 118-135 18 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access

Towards pan-genome read alignment to improve variation calling

Valenzuela, D., Norri, T., Välimäki, N., Pitkänen, E. & Mäkinen, V., 9 May 2018, In : BMC Genomics. 19, 8 p., 87.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
2017

Compressed Spaced Suffix Arrays

Gagie, T., Manzini, G. & Valenzuela, D., Jun 2017, In : Mathematics in Computer Science. 11, 2, p. 151-157 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Interval scheduling maximizing minimum coverage

Mäkinen, V., Staneva, V., Tomescu, A. I., Valenzuela, D. & Wilzbach, S., 10 Jul 2017, In : Discrete Applied Mathematics. 225, p. 130-135 6 p.

Research output: Contribution to journalArticleScientificpeer-review

2015

General Document Retrieval in Compact Space

Navarro, G., Puglisi, S. J. & Valenzuela, D., 1 Jan 2015, In : ACM Journal of Experimental Algorithmics. 19, p. 2.3:1.1-2.3:1.46

Research output: Contribution to journalArticleScientificpeer-review

2014

Recombination-aware alignment of diploid individuals

Mäkinen, V. & Valenzuela, D., 2014, In : BMC Genomics. 15, Suppl 6, p. S15 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File